Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46809 * 2 1 4 4 C 1.46498 * 119.99670 * 274.99648 * 3 2 1 5 5 C 1.50699 * 109.47149 * 277.27136 * 4 3 2 6 6 H 1.08000 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00119 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47083 * 59.99718 * 9 7 5 11 11 H 1.48497 * 109.47412 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47178 * 300.00301 * 9 7 5 13 13 S 1.65600 * 120.00040 * 95.00265 * 3 2 1 14 14 O 1.42094 * 106.40386 * 151.11347 * 13 3 2 15 15 O 1.42099 * 106.40601 * 18.18678 * 13 3 2 16 16 C 1.76206 * 107.21403 * 264.65233 * 13 3 2 17 17 C 1.38391 * 119.92502 * 343.97602 * 16 13 3 18 18 C 1.38342 * 120.30216 * 180.02562 * 17 16 13 19 19 C 1.37969 * 120.14903 * 359.97438 * 18 17 16 20 20 C 1.39600 * 119.84692 * 0.02562 * 19 18 17 21 21 C 1.47733 * 120.14653 * 180.02562 * 20 19 18 22 22 O 1.21476 * 119.99752 * 175.47316 * 21 20 19 23 23 O 1.34710 * 120.00258 * 355.48368 * 21 20 19 24 24 C 1.45193 * 116.99991 * 179.97438 * 23 21 20 25 25 C 1.37922 * 119.92193 * 163.97910 * 16 13 3 26 26 C 1.50698 * 120.08121 * 359.97438 * 25 16 13 27 27 H 1.08997 * 109.47284 * 300.00239 * 1 2 3 28 28 H 1.08996 * 109.47325 * 60.00319 * 1 2 3 29 29 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47284 * 239.99761 * 2 1 3 31 31 H 1.09005 * 109.47075 * 119.99594 * 2 1 3 32 32 H 1.08998 * 109.47207 * 37.27142 * 4 3 2 33 33 H 1.08999 * 109.46545 * 157.27300 * 4 3 2 34 34 H 0.97003 * 120.00295 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.84964 * 0.28042 * 17 16 13 36 36 H 1.08001 * 119.92428 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.07519 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47251 * 179.97438 * 24 23 21 39 39 H 1.09000 * 109.47332 * 299.99239 * 24 23 21 40 40 H 1.08995 * 109.47580 * 59.99798 * 24 23 21 41 41 H 1.08997 * 109.47574 * 262.62486 * 26 25 16 42 42 H 1.09006 * 109.46735 * 22.62245 * 26 25 16 43 43 H 1.08997 * 109.47339 * 142.61820 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4707 1.7459 -1.9096 6 1 4.1344 1.0441 -1.4266 7 6 3.8246 2.3108 -3.1166 8 7 3.0171 3.1666 -3.7040 9 14 5.4517 1.8617 -3.9167 10 1 5.4872 0.4007 -4.1802 11 1 5.5941 2.5999 -5.1973 12 1 6.5678 2.2279 -3.0081 13 16 2.4122 2.1203 1.4287 14 8 3.4215 3.0726 1.1230 15 8 2.5867 1.0819 2.3829 16 6 1.0011 3.0397 1.9465 17 6 -0.0143 3.3115 1.0464 18 6 -1.1255 4.0331 1.4444 19 6 -1.2284 4.4865 2.7434 20 6 -0.2078 4.2159 3.6567 21 6 -0.3114 4.6977 5.0494 22 8 0.5373 4.3915 5.8627 23 8 -1.3472 5.4764 5.4175 24 6 -1.3848 5.9123 6.8019 25 6 0.9111 3.4870 3.2481 26 6 2.0175 3.1897 4.2272 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3388 1.8398 -1.9305 33 1 2.1325 3.1810 -1.0706 34 1 3.2658 3.5637 -4.5533 35 1 0.0591 2.9550 0.0295 36 1 -1.9141 4.2421 0.7367 37 1 -2.0966 5.0494 3.0530 38 1 -2.2673 6.5313 6.9641 39 1 -1.4263 5.0414 7.4561 40 1 -0.4890 6.4918 7.0248 41 1 1.7509 2.3166 4.8227 42 1 2.9404 2.9900 3.6827 43 1 2.1615 4.0474 4.8841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264655695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -125.173361 kcal Electronic energy + Delta-G solvation = -28595.181984 eV Core-core repulsion = 24540.159821 eV Total energy + Delta-G solvation = -4055.022163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90482 -39.06286 -36.73998 -36.63519 -36.24086 -35.32022 -32.92354 -32.69945 -31.89504 -30.06140 -28.27934 -27.11545 -26.63395 -24.24010 -23.26897 -22.60493 -21.71066 -21.00264 -18.86218 -17.84748 -17.34302 -16.84521 -16.64209 -16.57613 -15.99424 -15.81150 -15.64483 -15.27473 -14.57276 -14.20472 -14.16473 -13.87458 -13.50678 -13.37669 -13.15941 -12.97453 -12.63504 -12.42990 -12.40557 -12.23969 -12.09057 -12.01475 -11.85505 -11.62474 -11.47691 -11.37747 -11.06301 -11.02126 -10.93151 -10.60739 -10.51896 -10.43860 -10.20654 -10.01200 -9.81038 -9.47646 -9.02695 -8.48029 -8.19315 -6.10430 -4.14155 0.43233 0.86487 0.94574 2.27029 2.41240 3.32732 3.36475 3.36740 3.41365 3.50769 4.15120 4.41025 4.42382 4.51520 4.69689 4.81701 4.84851 4.89938 5.07705 5.16115 5.19472 5.26613 5.36412 5.40997 5.46004 5.53451 5.65719 5.67553 5.71362 5.87852 5.96652 5.97609 6.01759 6.09269 6.24012 6.30355 6.51923 6.58326 6.60507 7.09753 7.28983 7.50005 7.50660 7.87190 8.14565 8.87860 9.51322 10.98365 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003327 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.263808 B = 8412.801034 C = 8470.863073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 N -0.983 5.983 4 C 0.251 3.749 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.686 3.314 14 O -0.937 6.937 15 O -0.969 6.969 16 C -0.684 4.684 17 C 0.017 3.983 18 C -0.158 4.158 19 C -0.015 4.015 20 C -0.157 4.157 21 C 0.511 3.489 22 O -0.498 6.498 23 O -0.357 6.357 24 C 0.037 3.963 25 C 0.081 3.919 26 C -0.146 4.146 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 1.963 14.080 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 N -0.823 5.823 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.772 3.228 14 O -0.927 6.927 15 O -0.960 6.960 16 C -0.766 4.766 17 C -0.002 4.002 18 C -0.176 4.176 19 C -0.034 4.034 20 C -0.159 4.159 21 C 0.357 3.643 22 O -0.387 6.387 23 O -0.273 6.273 24 C -0.057 4.057 25 C 0.079 3.921 26 C -0.202 4.202 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.087 1.988 14.630 19.081 hybrid contribution 0.031 0.281 -0.498 0.573 sum -12.056 2.268 14.132 18.714 Atomic orbital electron populations 1.22298 0.97259 1.01948 1.01913 1.21236 0.93129 0.82659 1.04041 1.57441 1.81248 1.21437 1.22210 1.19184 0.98001 0.91121 0.78726 1.21407 1.03732 1.26528 1.05147 0.91951 1.24919 0.97320 0.94744 0.96935 1.69893 1.36773 1.29213 1.17635 0.86566 0.83985 0.78515 0.78481 1.20124 1.21186 1.19918 1.02447 0.73941 0.73757 0.72644 1.93646 1.52622 1.62848 1.83567 1.93526 1.85108 1.56225 1.61105 1.31458 1.23051 1.20652 1.01418 1.21403 0.90356 0.89612 0.98835 1.21281 0.99362 1.00691 0.96276 1.21645 0.96390 0.92803 0.92513 1.18906 0.98530 1.07234 0.91258 1.21096 0.78987 0.75607 0.88594 1.90806 1.39358 1.55407 1.53137 1.86529 1.46428 1.62636 1.31746 1.23285 1.03448 1.00243 0.78687 1.19505 0.92975 0.87489 0.92116 1.21501 0.94539 1.05389 0.98767 0.93371 0.91790 0.91831 0.89115 0.90111 0.94232 0.94341 0.92565 0.83310 0.84092 0.83915 0.87970 0.91734 0.91710 0.88048 0.92175 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.12 1.91 6.37 -4.04 -0.03 1.88 16 3 N -0.98 -19.54 2.03 -115.66 -0.24 -19.78 16 4 C 0.25 5.91 4.07 -5.20 -0.02 5.89 16 5 C -0.53 -14.30 9.36 -34.44 -0.32 -14.62 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.28 13.29 55.43 0.74 -24.55 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 S 2.69 54.35 4.20 -107.50 -0.45 53.90 16 14 O -0.94 -22.65 17.03 -57.17 -0.97 -23.63 16 15 O -0.97 -19.74 14.94 -57.17 -0.85 -20.60 16 16 C -0.68 -11.72 5.83 -39.64 -0.23 -11.95 16 17 C 0.02 0.25 9.22 -39.49 -0.36 -0.12 16 18 C -0.16 -1.86 10.03 -39.64 -0.40 -2.26 16 19 C -0.02 -0.18 9.62 -39.17 -0.38 -0.55 16 20 C -0.16 -2.21 5.87 -104.98 -0.62 -2.83 16 21 C 0.51 6.80 7.85 34.61 0.27 7.07 16 22 O -0.50 -7.40 13.11 -19.25 -0.25 -7.66 16 23 O -0.36 -3.81 9.83 -40.52 -0.40 -4.21 16 24 C 0.04 0.27 10.56 101.05 1.07 1.34 16 25 C 0.08 1.32 5.91 -104.21 -0.62 0.70 16 26 C -0.15 -2.36 7.73 36.00 0.28 -2.08 16 27 H 0.05 0.61 7.80 -51.93 -0.41 0.21 16 28 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 31 H 0.08 1.28 6.88 -51.93 -0.36 0.92 16 32 H 0.04 0.92 8.11 -51.93 -0.42 0.49 16 33 H 0.04 0.96 7.65 -51.93 -0.40 0.57 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.15 2.15 6.38 -52.49 -0.33 1.81 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.22 7.62 -52.49 -0.40 0.82 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.06 1.03 5.94 -51.93 -0.31 0.72 16 43 H 0.11 1.63 5.86 -51.93 -0.30 1.33 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.36 370.76 -8.79 -42.15 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.85 Total: 0.28 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.07 Total: -17.84 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.50 Total: -44.32 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -2.48 Total: -56.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.45 Total: 53.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.36 -8.79 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264655695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.026 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds