Wall clock time and date at job start Sat Apr 11 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46809 * 2 1 4 4 C 1.46498 * 119.99670 * 274.99648 * 3 2 1 5 5 C 1.50699 * 109.47149 * 277.27136 * 4 3 2 6 6 H 1.08000 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00119 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47083 * 59.99718 * 9 7 5 11 11 H 1.48497 * 109.47412 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47178 * 300.00301 * 9 7 5 13 13 S 1.65600 * 120.00040 * 95.00265 * 3 2 1 14 14 O 1.42094 * 106.40386 * 151.11347 * 13 3 2 15 15 O 1.42099 * 106.40601 * 18.18678 * 13 3 2 16 16 C 1.76206 * 107.21403 * 264.65233 * 13 3 2 17 17 C 1.38391 * 119.92502 * 343.97602 * 16 13 3 18 18 C 1.38342 * 120.30216 * 180.02562 * 17 16 13 19 19 C 1.37969 * 120.14903 * 359.97438 * 18 17 16 20 20 C 1.39600 * 119.84692 * 0.02562 * 19 18 17 21 21 C 1.47733 * 120.14653 * 180.02562 * 20 19 18 22 22 O 1.21476 * 119.99752 * 175.47316 * 21 20 19 23 23 O 1.34710 * 120.00258 * 355.48368 * 21 20 19 24 24 C 1.45193 * 116.99991 * 179.97438 * 23 21 20 25 25 C 1.37922 * 119.92193 * 163.97910 * 16 13 3 26 26 C 1.50698 * 120.08121 * 359.97438 * 25 16 13 27 27 H 1.08997 * 109.47284 * 300.00239 * 1 2 3 28 28 H 1.08996 * 109.47325 * 60.00319 * 1 2 3 29 29 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47284 * 239.99761 * 2 1 3 31 31 H 1.09005 * 109.47075 * 119.99594 * 2 1 3 32 32 H 1.08998 * 109.47207 * 37.27142 * 4 3 2 33 33 H 1.08999 * 109.46545 * 157.27300 * 4 3 2 34 34 H 0.97003 * 120.00295 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.84964 * 0.28042 * 17 16 13 36 36 H 1.08001 * 119.92428 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.07519 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47251 * 179.97438 * 24 23 21 39 39 H 1.09000 * 109.47332 * 299.99239 * 24 23 21 40 40 H 1.08995 * 109.47580 * 59.99798 * 24 23 21 41 41 H 1.08997 * 109.47574 * 262.62486 * 26 25 16 42 42 H 1.09006 * 109.46735 * 22.62245 * 26 25 16 43 43 H 1.08997 * 109.47339 * 142.61820 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4707 1.7459 -1.9096 6 1 4.1344 1.0441 -1.4266 7 6 3.8246 2.3108 -3.1166 8 7 3.0171 3.1666 -3.7040 9 14 5.4517 1.8617 -3.9167 10 1 5.4872 0.4007 -4.1802 11 1 5.5941 2.5999 -5.1973 12 1 6.5678 2.2279 -3.0081 13 16 2.4122 2.1203 1.4287 14 8 3.4215 3.0726 1.1230 15 8 2.5867 1.0819 2.3829 16 6 1.0011 3.0397 1.9465 17 6 -0.0143 3.3115 1.0464 18 6 -1.1255 4.0331 1.4444 19 6 -1.2284 4.4865 2.7434 20 6 -0.2078 4.2159 3.6567 21 6 -0.3114 4.6977 5.0494 22 8 0.5373 4.3915 5.8627 23 8 -1.3472 5.4764 5.4175 24 6 -1.3848 5.9123 6.8019 25 6 0.9111 3.4870 3.2481 26 6 2.0175 3.1897 4.2272 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3388 1.8398 -1.9305 33 1 2.1325 3.1810 -1.0706 34 1 3.2658 3.5637 -4.5533 35 1 0.0591 2.9550 0.0295 36 1 -1.9141 4.2421 0.7367 37 1 -2.0966 5.0494 3.0530 38 1 -2.2673 6.5313 6.9641 39 1 -1.4263 5.0414 7.4561 40 1 -0.4890 6.4918 7.0248 41 1 1.7509 2.3166 4.8227 42 1 2.9404 2.9900 3.6827 43 1 2.1615 4.0474 4.8841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264655695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:12 Heat of formation + Delta-G solvation = -146.466961 kcal Electronic energy + Delta-G solvation = -28596.105344 eV Core-core repulsion = 24540.159821 eV Total energy + Delta-G solvation = -4055.945523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90021 -40.10122 -38.30268 -37.87237 -37.62169 -37.00122 -34.72007 -34.03425 -32.99027 -31.54363 -29.16029 -28.51837 -28.03502 -25.31251 -24.95503 -23.87955 -23.09464 -22.04298 -20.12631 -19.32150 -18.58832 -18.43336 -18.09875 -17.55714 -17.36144 -17.20475 -16.93553 -16.44848 -16.41456 -15.56246 -15.20501 -15.06339 -14.74897 -14.69048 -14.47362 -14.17019 -13.90053 -13.75320 -13.63719 -13.46556 -13.37985 -13.35747 -13.20522 -13.07397 -13.03914 -12.85146 -12.76306 -12.63628 -12.22955 -12.14113 -11.86096 -11.83847 -11.74170 -11.61010 -11.32945 -10.62363 -10.55796 -10.11587 -9.86613 -8.19212 -6.29377 -0.65303 -0.61640 -0.25414 1.25021 1.41012 1.44553 1.51121 1.53081 1.92932 2.34911 2.42828 2.63642 3.12808 3.36713 3.44877 3.56110 3.71488 3.73232 3.95180 4.11775 4.26820 4.28814 4.34308 4.34528 4.45422 4.45667 4.46581 4.50043 4.70859 4.71926 4.82035 4.90180 4.96896 5.03807 5.06461 5.14572 5.16949 5.27320 5.41708 5.50336 5.56595 5.71643 5.90947 6.12421 6.55114 6.77419 7.38880 8.88310 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003327 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.263808 B = 8412.801034 C = 8470.863073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.985 5.985 4 C 0.268 3.732 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.281 1.281 13 S 2.689 3.311 14 O -0.991 6.991 15 O -0.982 6.982 16 C -0.694 4.694 17 C 0.004 3.996 18 C -0.143 4.143 19 C 0.005 3.995 20 C -0.164 4.164 21 C 0.514 3.486 22 O -0.521 6.521 23 O -0.350 6.350 24 C 0.029 3.971 25 C 0.059 3.941 26 C -0.147 4.147 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.138 0.862 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.992 2.528 14.420 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.825 5.825 4 C 0.145 3.855 5 C -0.590 4.590 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.206 1.206 13 S 2.782 3.218 14 O -0.981 6.981 15 O -0.972 6.972 16 C -0.782 4.782 17 C -0.015 4.015 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.166 4.166 21 C 0.360 3.640 22 O -0.412 6.412 23 O -0.266 6.266 24 C -0.064 4.064 25 C 0.057 3.943 26 C -0.203 4.203 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.201 0.799 37 H 0.202 0.798 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.994 2.504 14.959 21.327 hybrid contribution 0.814 0.171 -0.469 0.955 sum -14.180 2.675 14.490 20.450 Atomic orbital electron populations 1.22238 0.94303 1.03850 1.02255 1.21498 0.95678 0.80813 1.03946 1.57250 1.81837 1.22665 1.20765 1.18779 0.96591 0.90307 0.79851 1.21786 1.05135 1.26425 1.05627 0.92996 1.25650 1.00352 0.94781 0.97554 1.69967 1.38151 1.29893 1.18022 0.85721 0.79977 0.79033 0.77688 1.18761 1.20126 1.20644 1.01798 0.74353 0.73300 0.72397 1.93571 1.56126 1.64128 1.84309 1.93492 1.85897 1.56736 1.61096 1.30740 1.22468 1.22421 1.02577 1.21568 0.90992 0.90577 0.98391 1.21734 0.98786 0.98426 0.97134 1.22133 0.96368 0.91175 0.91628 1.19075 0.98328 1.06753 0.92443 1.21001 0.79250 0.75625 0.88097 1.90794 1.40383 1.56367 1.53685 1.86508 1.44874 1.61627 1.33610 1.23644 1.05110 1.00761 0.76896 1.19564 0.94105 0.88926 0.91726 1.21496 0.94055 1.05858 0.98858 0.92734 0.91706 0.89106 0.89626 0.89783 0.93775 0.96315 0.92318 0.83453 0.79920 0.79816 0.84360 0.91637 0.91915 0.87734 0.94221 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 10.24 71.98 0.74 -3.49 16 2 C 0.11 3.51 6.37 86.38 0.55 4.06 16 3 N -0.98 -40.34 2.03 -519.84 -1.06 -41.39 16 4 C 0.27 12.97 4.07 85.63 0.35 13.32 16 5 C -0.55 -30.58 9.36 25.60 0.24 -30.34 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.02 0.92 5.46 84.66 0.46 1.38 16 8 N -0.92 -52.45 13.29 21.45 0.28 -52.17 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 S 2.69 113.92 4.20 -56.49 -0.24 113.68 16 14 O -0.99 -51.07 17.03 -128.00 -2.18 -53.25 16 15 O -0.98 -41.82 14.94 -128.00 -1.91 -43.74 16 16 C -0.69 -24.03 5.83 22.23 0.13 -23.90 16 17 C 0.00 0.10 9.22 22.33 0.21 0.31 16 18 C -0.14 -2.84 10.03 22.23 0.22 -2.61 16 19 C 0.00 0.09 9.62 22.53 0.22 0.31 16 20 C -0.16 -4.29 5.87 -20.10 -0.12 -4.40 16 21 C 0.51 12.70 7.85 70.33 0.55 13.25 16 22 O -0.52 -15.14 13.11 19.91 0.26 -14.87 16 23 O -0.35 -6.36 9.83 -56.20 -0.55 -6.92 16 24 C 0.03 0.34 10.56 113.37 1.20 1.54 16 25 C 0.06 1.92 5.91 -19.60 -0.12 1.80 16 26 C -0.15 -4.93 7.73 71.24 0.55 -4.38 16 27 H 0.05 1.30 7.80 -2.39 -0.02 1.28 16 28 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.89 8.11 -2.39 -0.02 2.88 16 31 H 0.08 2.71 6.88 -2.38 -0.02 2.69 16 32 H 0.04 2.08 8.11 -2.39 -0.02 2.06 16 33 H 0.02 0.98 7.65 -2.39 -0.02 0.96 16 34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.15 4.17 6.38 -2.91 -0.02 4.15 16 36 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.18 2.03 7.62 -2.91 -0.02 2.01 16 38 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.04 1.45 5.94 -2.38 -0.01 1.44 16 43 H 0.11 3.57 5.86 -2.39 -0.01 3.56 16 Total: -1.00 -74.99 370.76 2.84 -72.15 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.03 Total: 13.51 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 5.18 Total: -33.17 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -0.77 Total: -93.56 kcal Atomic # 8 Polarization: -114.40 SS G_CDS: -4.38 Total: -118.78 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 113.92 SS G_CDS: -0.24 Total: 113.68 kcal Total: -74.99 2.84 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264655695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.312 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds