Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47547 * 2 1 4 4 C 1.34775 * 120.00304 * 179.97438 * 3 2 1 5 5 O 1.21586 * 119.99848 * 0.02562 * 4 3 2 6 6 C 1.47596 * 120.00140 * 180.02562 * 4 3 2 7 7 C 1.39735 * 120.08766 * 180.02562 * 6 4 3 8 8 C 1.37699 * 119.90971 * 180.02562 * 7 6 4 9 9 C 1.38993 * 120.09285 * 0.02562 * 8 7 6 10 10 O 1.35709 * 119.91658 * 179.97438 * 9 8 7 11 11 S 1.52206 * 113.99798 * 89.99999 * 10 9 8 12 12 O 1.42102 * 104.27284 * 191.07168 * 11 10 9 13 13 O 1.42097 * 104.27652 * 318.92711 * 11 10 9 14 14 C 1.81397 * 104.45132 * 75.00391 * 11 10 9 15 15 C 1.52998 * 109.47056 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.46987 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.46938 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00180 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00035 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00200 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46945 * 59.99902 * 21 19 17 23 23 H 1.48494 * 109.46978 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46938 * 300.00117 * 21 19 17 25 25 C 1.39004 * 120.17251 * 0.24928 * 9 8 7 26 26 C 1.37697 * 120.08924 * 359.45047 * 25 9 8 27 27 H 1.09005 * 109.46818 * 60.00038 * 1 2 3 28 28 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46868 * 300.00363 * 1 2 3 30 30 H 1.09000 * 109.46868 * 239.99637 * 2 1 3 31 31 H 1.09004 * 109.46580 * 120.00454 * 2 1 3 32 32 H 0.96999 * 119.99563 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.04699 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.95514 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46801 * 299.99915 * 14 11 10 36 36 H 1.09000 * 109.47473 * 59.99537 * 14 11 10 37 37 H 1.08993 * 109.46944 * 299.99631 * 15 14 11 38 38 H 1.09006 * 109.47302 * 59.99913 * 15 14 11 39 39 H 1.08993 * 109.47450 * 299.99900 * 16 15 14 40 40 H 1.09006 * 109.46698 * 60.00122 * 16 15 14 41 41 H 0.97004 * 119.99856 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.95358 * 179.72707 * 25 9 8 43 43 H 1.08001 * 120.04597 * 180.27072 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1336 0.7032 0.0005 6 6 3.8356 3.0189 0.0011 7 6 5.2090 3.2763 0.0011 8 6 5.6640 4.5759 0.0022 9 6 4.7593 5.6311 0.0038 10 8 5.2117 6.9106 0.0054 11 16 5.4177 7.4960 -1.3844 12 8 6.1262 8.7060 -1.1534 13 8 6.0019 6.4356 -2.1283 14 6 3.7408 7.8445 -1.9820 15 6 3.8146 8.4435 -3.3879 16 6 2.4002 8.7368 -3.8921 17 6 2.4729 9.3273 -5.2767 18 1 3.4320 9.4779 -5.7499 19 6 1.3150 9.6754 -5.9394 20 7 0.1471 9.4924 -5.3631 21 14 1.4051 10.4067 -7.6560 22 1 2.0660 9.4418 -8.5711 23 1 0.0323 10.6915 -8.1453 24 1 2.1886 11.6675 -7.6163 25 6 3.3923 5.3792 0.0095 26 6 2.9292 4.0825 0.0023 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3881 2.1184 0.0004 33 1 5.9127 2.4571 0.0003 34 1 6.7254 4.7757 0.0017 35 1 3.1659 6.9188 -2.0115 36 1 3.2554 8.5523 -1.3101 37 1 4.3895 9.3689 -3.3588 38 1 4.2998 7.7352 -4.0596 39 1 1.8255 7.8111 -3.9213 40 1 1.9146 9.4449 -3.2205 41 1 -0.6675 9.7377 -5.8292 42 1 2.6924 6.2018 0.0152 43 1 1.8669 3.8877 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265289756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -129.055040 kcal Electronic energy + Delta-G solvation = -26946.986791 eV Core-core repulsion = 22891.796306 eV Total energy + Delta-G solvation = -4055.190485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41683 -40.19089 -37.91481 -37.13150 -36.04669 -35.74177 -34.79928 -32.31467 -32.04043 -31.42234 -30.05155 -27.96239 -25.06195 -24.01736 -23.52027 -22.81531 -21.61430 -20.76363 -20.29103 -18.64129 -18.30842 -17.58469 -17.47316 -16.64160 -16.18550 -15.94474 -15.57404 -15.49879 -15.25779 -14.53928 -14.48466 -14.39533 -14.28412 -14.00745 -13.44633 -13.27494 -13.04195 -12.83473 -12.68931 -12.40646 -12.37345 -12.27279 -12.15761 -12.02051 -11.92848 -11.89189 -11.45586 -11.31796 -10.95007 -10.94068 -10.48708 -10.38330 -10.02753 -9.59919 -9.56748 -9.48975 -9.28018 -9.16357 -8.45261 -6.10738 -4.13860 -0.18768 0.53886 0.81450 2.04960 2.37045 2.70672 3.29110 3.31070 3.33082 3.36301 3.65209 3.96592 4.20206 4.21873 4.32906 4.38251 4.56251 4.58408 4.66856 4.76112 4.85721 4.91991 4.98898 5.05579 5.25922 5.35094 5.40892 5.45243 5.47514 5.61258 5.66151 5.74610 5.77711 5.82557 5.97895 6.17124 6.31054 6.33902 6.78405 7.03417 7.49834 7.59489 7.77429 7.86824 8.26943 8.91888 9.51127 11.00409 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009416 B = 0.002926 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.812635 B = 9567.499183 C =11905.518671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.727 5.727 4 C 0.561 3.439 5 O -0.532 6.532 6 C -0.127 4.127 7 C -0.041 4.041 8 C -0.099 4.099 9 C 0.100 3.900 10 O -0.670 6.670 11 S 2.581 3.419 12 O -0.928 6.928 13 O -0.952 6.952 14 C -0.631 4.631 15 C -0.104 4.104 16 C 0.032 3.968 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.136 4.136 26 C -0.068 4.068 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.262 0.738 42 H 0.152 0.848 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -16.184 15.438 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.380 5.380 4 C 0.348 3.652 5 O -0.410 6.410 6 C -0.131 4.131 7 C -0.060 4.060 8 C -0.119 4.119 9 C 0.058 3.942 10 O -0.628 6.628 11 S 2.679 3.321 12 O -0.927 6.927 13 O -0.951 6.951 14 C -0.760 4.760 15 C -0.143 4.143 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.156 4.156 26 C -0.086 4.086 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.170 0.830 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.817 -16.775 15.640 23.107 hybrid contribution -1.079 1.160 -1.067 1.910 sum 1.738 -15.615 14.573 21.429 Atomic orbital electron populations 1.22031 0.94134 1.03497 1.02843 1.21355 0.94478 0.82400 1.02708 1.45981 1.06901 1.09490 1.75637 1.18110 0.82372 0.88414 0.76288 1.90802 1.55322 1.45540 1.49309 1.20107 0.94647 0.93017 1.05319 1.21180 0.94569 0.96411 0.93839 1.21323 1.00878 0.91254 0.98433 1.18324 0.92684 0.79143 1.04036 1.85725 1.85304 1.33149 1.58669 1.05936 0.78539 0.74754 0.72836 1.93622 1.70119 1.46621 1.82291 1.93630 1.75707 1.54423 1.71322 1.30819 1.22434 1.11699 1.11073 1.21503 1.04442 0.99797 0.88523 1.19059 0.88403 0.97210 0.96000 1.21205 0.92845 1.41819 1.00731 0.92382 1.25009 0.95400 0.95663 0.98211 1.69941 0.97457 1.48024 1.38016 0.86609 0.77086 0.79779 0.84294 1.20096 1.21231 1.20087 1.21379 0.93611 0.98867 1.01734 1.21140 0.99842 0.90937 0.96713 0.91631 0.90582 0.91839 0.91125 0.91248 0.76210 0.83050 0.83380 0.85161 0.84637 0.91325 0.91329 0.96097 0.96047 0.92817 0.83007 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.03 37.16 0.37 -0.29 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.70 16 3 N -0.73 -5.21 5.51 -61.33 -0.34 -5.55 16 4 C 0.56 5.76 7.76 -12.44 -0.10 5.66 16 5 O -0.53 -7.23 16.34 5.29 0.09 -7.14 16 6 C -0.13 -1.23 5.87 -104.96 -0.62 -1.84 16 7 C -0.04 -0.42 9.58 -39.22 -0.38 -0.80 16 8 C -0.10 -1.10 9.02 -39.50 -0.36 -1.45 16 9 C 0.10 1.18 4.80 -39.02 -0.19 0.99 16 10 O -0.67 -8.70 10.04 -51.15 -0.51 -9.22 16 11 S 2.58 38.61 5.17 -107.50 -0.56 38.05 16 12 O -0.93 -16.77 18.09 -67.04 -1.21 -17.98 16 13 O -0.95 -15.84 16.25 -67.04 -1.09 -16.92 16 14 C -0.63 -9.25 5.46 37.16 0.20 -9.04 16 15 C -0.10 -2.01 5.16 -26.73 -0.14 -2.15 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.14 -1.28 8.44 -39.50 -0.33 -1.61 16 26 C -0.07 -0.54 9.53 -39.22 -0.37 -0.91 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.40 1.85 6.49 -40.82 -0.27 1.58 16 33 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 34 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.64 6.62 -51.92 -0.34 1.29 16 36 H 0.14 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.15 1.10 7.51 -52.49 -0.39 0.70 16 43 H 0.14 0.63 6.40 -52.49 -0.34 0.29 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -36.45 377.33 -10.63 -47.08 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.93 Total: -1.62 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.48 Total: -23.39 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.40 Total: -30.73 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.73 Total: -51.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 38.61 SS G_CDS: -0.56 Total: 38.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.45 -10.63 -47.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265289756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.972 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds