Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 117.00212 * 2 1 4 4 C 1.38605 * 120.00477 * 359.97438 * 3 2 1 5 5 C 1.38813 * 120.01801 * 180.02562 * 4 3 2 6 6 N 1.40091 * 119.98149 * 179.75141 * 5 4 3 7 7 C 1.46503 * 119.99587 * 292.86148 * 6 5 4 8 8 C 1.34776 * 120.00169 * 112.86296 * 6 5 4 9 9 O 1.21285 * 119.99994 * 5.27832 * 8 6 5 10 10 C 1.50693 * 119.99478 * 185.28086 * 8 6 5 11 11 S 1.81010 * 109.46941 * 179.97438 * 10 8 6 12 12 C 1.76198 * 100.00048 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00050 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99659 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99489 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00217 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47305 * 90.00273 * 16 14 12 18 18 H 1.48510 * 109.46975 * 210.00585 * 16 14 12 19 19 H 1.48503 * 109.47327 * 329.99994 * 16 14 12 20 20 C 1.38820 * 120.03901 * 0.02562 * 5 4 3 21 21 C 1.38596 * 120.01765 * 0.02562 * 20 5 4 22 22 O 1.35999 * 120.00607 * 180.02562 * 21 20 5 23 23 C 1.42899 * 117.00100 * 359.95268 * 22 21 20 24 24 C 1.38975 * 119.98351 * 359.97438 * 21 20 5 25 25 O 1.36164 * 120.01907 * 180.02562 * 24 21 20 26 26 C 1.42902 * 116.99906 * 270.01378 * 25 24 21 27 27 H 1.09001 * 109.46623 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.46841 * 60.00209 * 1 2 3 29 29 H 1.08993 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99429 * 0.03287 * 4 3 2 31 31 H 1.09006 * 109.46829 * 89.99837 * 7 6 5 32 32 H 1.08997 * 109.46927 * 210.00038 * 7 6 5 33 33 H 1.09007 * 109.47177 * 330.00428 * 7 6 5 34 34 H 1.09003 * 109.47235 * 299.99782 * 10 8 6 35 35 H 1.09005 * 109.47661 * 60.00348 * 10 8 6 36 36 H 0.97000 * 119.99539 * 179.97438 * 15 14 12 37 37 H 1.08003 * 119.98596 * 179.97438 * 20 5 4 38 38 H 1.09003 * 109.47415 * 300.00313 * 23 22 21 39 39 H 1.08999 * 109.47130 * 60.00104 * 23 22 21 40 40 H 1.08997 * 109.46920 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46964 * 300.00732 * 26 25 24 42 42 H 1.09003 * 109.46412 * 60.00359 * 26 25 24 43 43 H 1.08997 * 109.47024 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2917 2.3743 -0.0005 5 6 1.9217 3.6112 -0.0011 6 7 1.1581 4.7857 -0.0069 7 6 0.3502 5.1283 -1.1800 8 6 1.1668 5.6005 1.0667 9 8 1.9077 5.3681 1.9984 10 6 0.2559 6.8002 1.1093 11 16 0.4988 7.6871 2.6684 12 6 -0.6555 9.0012 2.4560 13 1 -1.2445 9.0619 1.5527 14 6 -0.8071 9.9591 3.4490 15 7 -1.6691 10.9411 3.2901 16 14 0.2122 9.8545 5.0109 17 1 1.4797 10.6055 4.8260 18 1 -0.5515 10.4427 6.1406 19 1 0.5183 8.4321 5.3079 20 6 3.3079 3.6851 -0.0016 21 6 4.0642 2.5236 -0.0021 22 8 5.4222 2.5963 -0.0022 23 6 6.0021 3.9023 -0.0026 24 6 3.4343 1.2848 -0.0016 25 8 4.1766 0.1432 -0.0016 26 6 4.5300 -0.4008 -1.2749 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2133 2.3178 -0.0004 31 1 -0.6457 4.6980 -1.0735 32 1 0.2708 6.2122 -1.2625 33 1 0.8243 4.7293 -2.0768 34 1 0.4873 7.4620 0.2746 35 1 -0.7810 6.4720 1.0362 36 1 -1.7752 11.6103 3.9842 37 1 3.7972 4.6480 -0.0024 38 1 5.6798 4.4426 -0.8928 39 1 5.6799 4.4432 0.8871 40 1 7.0887 3.8174 -0.0030 41 1 3.6241 -0.6403 -1.8317 42 1 5.1164 0.3299 -1.8320 43 1 5.1194 -1.3064 -1.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266104339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -100.233987 kcal Electronic energy + Delta-G solvation = -27527.731529 eV Core-core repulsion = 23473.790819 eV Total energy + Delta-G solvation = -4053.940711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17987 -39.76684 -39.21647 -37.87752 -36.78275 -34.79979 -32.48988 -30.75931 -29.90827 -28.98473 -28.08984 -27.30873 -27.14384 -25.93296 -25.61914 -22.80150 -22.20045 -20.19395 -18.58704 -17.82470 -17.58216 -17.45612 -16.78968 -16.67004 -16.39691 -16.04189 -15.73146 -15.35447 -15.18299 -15.02929 -14.92161 -14.71730 -14.14795 -13.72071 -13.52650 -13.29150 -13.14270 -12.84194 -12.72108 -12.56125 -12.46471 -12.13574 -12.03354 -11.82742 -11.74634 -11.43710 -11.31313 -11.05105 -10.90459 -10.66133 -10.11546 -9.91582 -9.67793 -9.14178 -9.05035 -8.56720 -8.40083 -8.26186 -6.99156 -6.33922 -4.06651 0.86985 1.14789 2.47066 2.63255 2.73440 3.05142 3.20883 3.29401 3.41341 3.46987 3.51719 3.72311 4.28393 4.55013 4.69719 4.76382 4.80772 4.89565 4.90540 4.92362 5.00175 5.03934 5.05146 5.10859 5.14443 5.21452 5.22812 5.23617 5.24703 5.31396 5.36180 5.50007 5.50653 5.66426 5.89941 5.93726 6.03512 6.17951 6.56897 6.84128 7.00338 7.18016 7.50941 7.89024 8.25390 8.36124 9.12112 10.75177 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002757 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.947471 B =10153.729154 C =10930.354667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.158 3.842 4 C -0.236 4.236 5 C 0.227 3.773 6 N -0.586 5.586 7 C 0.080 3.920 8 C 0.533 3.467 9 O -0.499 6.499 10 C -0.119 4.119 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.089 0.911 14 C 0.096 3.904 15 N -0.879 5.879 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.217 4.217 21 C 0.160 3.840 22 O -0.302 6.302 23 C 0.023 3.977 24 C 0.023 3.977 25 O -0.311 6.311 26 C 0.035 3.965 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.271 0.729 37 H 0.139 0.861 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.178 -20.413 -14.095 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.111 3.889 4 C -0.256 4.256 5 C 0.135 3.865 6 N -0.319 5.319 7 C -0.062 4.062 8 C 0.322 3.678 9 O -0.370 6.370 10 C -0.270 4.270 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.107 0.893 14 C -0.113 4.113 15 N -0.515 5.515 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.238 4.238 21 C 0.112 3.888 22 O -0.214 6.214 23 C -0.072 4.072 24 C -0.022 4.022 25 O -0.227 6.227 26 C -0.060 4.060 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.459 -20.993 -12.475 26.188 hybrid contribution -1.065 1.104 -0.679 1.678 sum 8.394 -19.889 -13.155 25.280 Atomic orbital electron populations 1.23148 0.78013 1.04166 1.01764 1.86150 1.21502 1.25575 1.88190 1.18639 0.90399 0.84634 0.95263 1.21060 1.00562 0.90662 1.13333 1.16944 0.89151 0.85328 0.95033 1.45560 1.47532 1.21330 1.17513 1.21912 0.95037 1.02527 0.86687 1.20513 0.83126 0.83196 0.80978 1.90742 1.39261 1.71826 1.35219 1.23314 1.01497 0.96841 1.05329 1.84855 1.56287 1.31123 1.19179 1.22283 1.25225 1.10527 1.08887 0.89311 1.24706 0.94544 0.93867 0.98137 1.69936 1.33970 1.12963 1.34671 0.86747 0.80769 0.81498 0.82923 1.19177 1.19869 1.15910 1.21168 0.93591 0.97899 1.11133 1.18705 0.83091 0.92104 0.94871 1.86133 1.16189 1.31040 1.88044 1.23176 0.99096 0.82845 1.02065 1.16902 0.86327 0.84692 1.14300 1.86198 1.70160 1.37681 1.28650 1.22968 0.99424 0.98430 0.85134 0.92192 0.92475 0.87944 0.84374 0.92039 0.89722 0.90830 0.88204 0.88129 0.91880 0.84347 0.92498 0.91839 0.87900 0.93841 0.93816 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.51 10.27 -34.42 -0.35 -3.86 16 3 C 0.16 2.05 6.69 -39.17 -0.26 1.78 16 4 C -0.24 -2.93 8.83 -39.23 -0.35 -3.27 16 5 C 0.23 3.15 4.82 -83.65 -0.40 2.74 16 6 N -0.59 -8.07 2.93 -120.80 -0.35 -8.43 16 7 C 0.08 0.76 10.10 59.85 0.60 1.36 16 8 C 0.53 9.52 7.57 -10.99 -0.08 9.44 16 9 O -0.50 -10.80 15.42 5.55 0.09 -10.72 16 10 C -0.12 -2.23 4.83 36.00 0.17 -2.06 16 11 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 12 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 13 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 14 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.10 13.97 55.49 0.78 -25.33 16 16 Si 0.86 21.50 27.74 -169.99 -4.71 16.79 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 20 C -0.22 -3.02 8.31 -39.23 -0.33 -3.35 16 21 C 0.16 2.20 6.69 -39.18 -0.26 1.94 16 22 O -0.30 -3.86 10.27 -34.42 -0.35 -4.21 16 23 C 0.02 0.22 9.81 101.05 0.99 1.21 16 24 C 0.02 0.33 5.75 -39.04 -0.22 0.10 16 25 O -0.31 -4.31 9.98 -45.60 -0.46 -4.76 16 26 C 0.04 0.34 11.14 101.05 1.13 1.47 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.44 6.29 -52.49 -0.33 1.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.76 6.48 -51.93 -0.34 0.43 16 33 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 34 H 0.10 1.69 7.24 -51.92 -0.38 1.31 16 35 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.14 1.88 6.29 -52.48 -0.33 1.55 16 38 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -35.89 378.32 -5.39 -41.27 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.92 Total: -1.82 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 2.19 Total: 0.86 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.42 Total: -33.75 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.08 Total: -23.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.89 -5.39 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266104339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.961 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds