Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 117.00212 * 2 1 4 4 C 1.38605 * 120.00477 * 359.97438 * 3 2 1 5 5 C 1.38813 * 120.01801 * 180.02562 * 4 3 2 6 6 N 1.40091 * 119.98149 * 179.75141 * 5 4 3 7 7 C 1.46503 * 119.99587 * 292.86148 * 6 5 4 8 8 C 1.34776 * 120.00169 * 112.86296 * 6 5 4 9 9 O 1.21285 * 119.99994 * 5.27832 * 8 6 5 10 10 C 1.50693 * 119.99478 * 185.28086 * 8 6 5 11 11 S 1.81010 * 109.46941 * 179.97438 * 10 8 6 12 12 C 1.76198 * 100.00048 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00050 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99659 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99489 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00217 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47305 * 90.00273 * 16 14 12 18 18 H 1.48510 * 109.46975 * 210.00585 * 16 14 12 19 19 H 1.48503 * 109.47327 * 329.99994 * 16 14 12 20 20 C 1.38820 * 120.03901 * 0.02562 * 5 4 3 21 21 C 1.38596 * 120.01765 * 0.02562 * 20 5 4 22 22 O 1.35999 * 120.00607 * 180.02562 * 21 20 5 23 23 C 1.42899 * 117.00100 * 359.95268 * 22 21 20 24 24 C 1.38975 * 119.98351 * 359.97438 * 21 20 5 25 25 O 1.36164 * 120.01907 * 180.02562 * 24 21 20 26 26 C 1.42902 * 116.99906 * 270.01378 * 25 24 21 27 27 H 1.09001 * 109.46623 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.46841 * 60.00209 * 1 2 3 29 29 H 1.08993 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99429 * 0.03287 * 4 3 2 31 31 H 1.09006 * 109.46829 * 89.99837 * 7 6 5 32 32 H 1.08997 * 109.46927 * 210.00038 * 7 6 5 33 33 H 1.09007 * 109.47177 * 330.00428 * 7 6 5 34 34 H 1.09003 * 109.47235 * 299.99782 * 10 8 6 35 35 H 1.09005 * 109.47661 * 60.00348 * 10 8 6 36 36 H 0.97000 * 119.99539 * 179.97438 * 15 14 12 37 37 H 1.08003 * 119.98596 * 179.97438 * 20 5 4 38 38 H 1.09003 * 109.47415 * 300.00313 * 23 22 21 39 39 H 1.08999 * 109.47130 * 60.00104 * 23 22 21 40 40 H 1.08997 * 109.46920 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46964 * 300.00732 * 26 25 24 42 42 H 1.09003 * 109.46412 * 60.00359 * 26 25 24 43 43 H 1.08997 * 109.47024 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2917 2.3743 -0.0005 5 6 1.9217 3.6112 -0.0011 6 7 1.1581 4.7857 -0.0069 7 6 0.3502 5.1283 -1.1800 8 6 1.1668 5.6005 1.0667 9 8 1.9077 5.3681 1.9984 10 6 0.2559 6.8002 1.1093 11 16 0.4988 7.6871 2.6684 12 6 -0.6555 9.0012 2.4560 13 1 -1.2445 9.0619 1.5527 14 6 -0.8071 9.9591 3.4490 15 7 -1.6691 10.9411 3.2901 16 14 0.2122 9.8545 5.0109 17 1 1.4797 10.6055 4.8260 18 1 -0.5515 10.4427 6.1406 19 1 0.5183 8.4321 5.3079 20 6 3.3079 3.6851 -0.0016 21 6 4.0642 2.5236 -0.0021 22 8 5.4222 2.5963 -0.0022 23 6 6.0021 3.9023 -0.0026 24 6 3.4343 1.2848 -0.0016 25 8 4.1766 0.1432 -0.0016 26 6 4.5300 -0.4008 -1.2749 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2133 2.3178 -0.0004 31 1 -0.6457 4.6980 -1.0735 32 1 0.2708 6.2122 -1.2625 33 1 0.8243 4.7293 -2.0768 34 1 0.4873 7.4620 0.2746 35 1 -0.7810 6.4720 1.0362 36 1 -1.7752 11.6103 3.9842 37 1 3.7972 4.6480 -0.0024 38 1 5.6798 4.4426 -0.8928 39 1 5.6799 4.4432 0.8871 40 1 7.0887 3.8174 -0.0030 41 1 3.6241 -0.6403 -1.8317 42 1 5.1164 0.3299 -1.8320 43 1 5.1194 -1.3064 -1.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266104339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -124.158230 kcal Electronic energy + Delta-G solvation = -27528.768962 eV Core-core repulsion = 23473.790819 eV Total energy + Delta-G solvation = -4054.978144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18037 -40.96710 -40.08842 -38.80389 -37.91775 -35.88025 -34.67359 -31.92427 -30.85184 -30.18467 -28.83587 -28.05122 -28.00434 -27.87021 -26.78527 -23.87580 -23.11601 -21.35582 -19.89674 -19.43553 -18.62650 -18.50032 -17.88376 -17.66056 -17.34968 -17.21290 -17.03715 -16.59903 -16.52699 -16.05424 -15.91452 -15.79504 -15.52792 -15.03539 -14.80193 -14.58196 -14.31361 -13.95570 -13.70737 -13.50701 -13.39008 -13.32925 -13.23957 -13.02157 -12.79203 -12.71302 -12.56913 -12.49296 -12.25149 -11.89384 -11.75036 -11.17667 -11.12467 -11.01468 -10.53707 -10.20916 -9.35718 -9.26752 -9.01835 -8.51986 -6.23013 -0.14579 0.16965 0.92941 1.30408 1.36027 1.42029 1.50161 1.72959 1.93236 2.23672 2.24831 2.59970 2.66147 2.78641 2.86549 3.53344 3.82147 3.89331 3.93292 3.98441 4.12476 4.20868 4.26014 4.29086 4.34272 4.37297 4.40570 4.49206 4.49447 4.50992 4.58555 4.65697 4.72653 4.78480 4.85811 4.98104 5.07562 5.16804 5.54886 5.70793 5.93866 5.99970 6.11913 6.15273 6.58597 6.93092 6.94443 8.60135 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002757 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.947471 B =10153.729154 C =10930.354667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.314 6.314 3 C 0.157 3.843 4 C -0.228 4.228 5 C 0.209 3.791 6 N -0.571 5.571 7 C 0.069 3.931 8 C 0.537 3.463 9 O -0.546 6.546 10 C -0.102 4.102 11 S -0.178 6.178 12 C -0.525 4.525 13 H 0.067 0.933 14 C 0.047 3.953 15 N -0.915 5.915 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.238 1.238 20 C -0.225 4.225 21 C 0.151 3.849 22 O -0.314 6.314 23 C 0.019 3.981 24 C 0.009 3.991 25 O -0.333 6.333 26 C 0.032 3.968 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.277 0.723 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 -21.886 -15.231 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.227 6.227 3 C 0.109 3.891 4 C -0.249 4.249 5 C 0.118 3.882 6 N -0.303 5.303 7 C -0.071 4.071 8 C 0.325 3.675 9 O -0.422 6.422 10 C -0.253 4.253 11 S 0.048 5.952 12 C -0.672 4.672 13 H 0.085 0.915 14 C -0.158 4.158 15 N -0.553 5.553 16 Si 0.733 3.267 17 H -0.187 1.187 18 H -0.185 1.185 19 H -0.162 1.162 20 C -0.246 4.246 21 C 0.104 3.896 22 O -0.227 6.227 23 C -0.075 4.075 24 C -0.037 4.037 25 O -0.250 6.250 26 C -0.062 4.062 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.391 -22.482 -13.666 27.936 hybrid contribution -1.057 1.404 -0.512 1.831 sum 8.334 -21.078 -14.178 26.735 Atomic orbital electron populations 1.23470 0.75867 1.06082 1.02543 1.86146 1.23713 1.24944 1.87895 1.18688 0.90244 0.85321 0.94846 1.21175 1.01525 0.89798 1.12353 1.17094 0.89240 0.85675 0.96171 1.45448 1.47072 1.20431 1.17315 1.22285 0.95733 1.03312 0.85787 1.20278 0.82469 0.83239 0.81492 1.90728 1.41143 1.72992 1.37287 1.23266 1.02944 0.97035 1.02048 1.84827 1.55388 1.30849 1.24092 1.22418 1.25278 1.11552 1.07974 0.91507 1.25508 0.95590 0.93717 1.01013 1.70009 1.35447 1.13882 1.35983 0.85918 0.79574 0.81297 0.79914 1.18727 1.18453 1.16233 1.21185 0.93901 0.97871 1.11647 1.18802 0.83568 0.92133 0.95111 1.86114 1.15815 1.32801 1.87980 1.23391 1.00456 0.81695 1.02008 1.17187 0.87077 0.84895 1.14500 1.86136 1.70345 1.37690 1.30835 1.23156 1.00074 0.99101 0.83869 0.92289 0.90702 0.85626 0.82290 0.89850 0.89182 0.88504 0.86130 0.86301 0.91377 0.84688 0.91290 0.93122 0.85269 0.93152 0.93534 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.31 -6.77 10.27 -79.53 -0.82 -7.59 16 3 C 0.16 3.86 6.69 22.53 0.15 4.01 16 4 C -0.23 -5.24 8.83 22.49 0.20 -5.05 16 5 C 0.21 5.52 4.82 38.10 0.18 5.70 16 6 N -0.57 -14.59 2.93 -654.50 -1.92 -16.50 16 7 C 0.07 1.08 10.10 127.77 1.29 2.37 16 8 C 0.54 18.51 7.57 87.65 0.66 19.17 16 9 O -0.55 -23.58 15.42 -3.04 -0.05 -23.63 16 10 C -0.10 -3.67 4.83 71.23 0.34 -3.33 16 11 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 12 C -0.52 -29.64 10.04 67.95 0.68 -28.96 16 13 H 0.07 3.94 8.03 -2.91 -0.02 3.92 16 14 C 0.05 2.72 5.50 84.86 0.47 3.19 16 15 N -0.92 -54.72 13.97 21.65 0.30 -54.42 16 16 Si 0.91 44.43 27.74 68.60 1.90 46.33 16 17 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 20 C -0.23 -6.18 8.31 22.49 0.19 -6.00 16 21 C 0.15 4.15 6.69 22.53 0.15 4.30 16 22 O -0.31 -7.98 10.27 -79.50 -0.82 -8.79 16 23 C 0.02 0.34 9.81 113.37 1.11 1.45 16 24 C 0.01 0.24 5.75 22.62 0.13 0.37 16 25 O -0.33 -9.05 9.98 -71.20 -0.71 -9.76 16 26 C 0.03 0.58 11.14 113.37 1.26 1.85 16 27 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 28 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.16 2.85 6.29 -2.91 -0.02 2.83 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.09 1.34 6.48 -2.39 -0.02 1.33 16 33 H 0.10 1.12 8.05 -2.38 -0.02 1.10 16 34 H 0.12 3.84 7.24 -2.39 -0.02 3.83 16 35 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.14 3.68 6.29 -2.91 -0.02 3.66 16 38 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 39 H 0.05 1.05 7.66 -2.39 -0.02 1.03 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.53 378.32 5.78 -72.75 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 7.94 Total: 0.38 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.61 Total: -70.92 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.39 Total: -49.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -78.53 5.78 -72.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266104339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.412 kcal (2) G-P(sol) polarization free energy of solvation -78.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds