Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47125 * 2 1 4 4 C 1.46505 * 119.99644 * 274.99969 * 3 2 1 5 5 C 1.50697 * 109.47046 * 275.00176 * 4 3 2 6 6 H 1.08003 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99869 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00349 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47434 * 89.99661 * 9 7 5 11 11 H 1.48501 * 109.46990 * 209.99829 * 9 7 5 12 12 H 1.48504 * 109.46952 * 329.99678 * 9 7 5 13 13 S 1.65597 * 120.00149 * 95.00015 * 3 2 1 14 14 O 1.42102 * 106.39978 * 156.45549 * 13 3 2 15 15 O 1.42099 * 106.40281 * 23.53939 * 13 3 2 16 16 C 1.76198 * 107.21923 * 269.99886 * 13 3 2 17 17 C 1.38387 * 119.84632 * 270.29402 * 16 13 3 18 18 C 1.37926 * 120.14876 * 180.25426 * 17 16 13 19 19 C 1.39653 * 119.84758 * 359.47522 * 18 17 16 20 20 C 1.47723 * 120.15047 * 180.23236 * 19 18 17 21 21 O 1.21475 * 119.99902 * 173.77022 * 20 19 18 22 22 O 1.34708 * 119.99960 * 353.76661 * 20 19 18 23 23 C 1.45204 * 116.99908 * 180.02562 * 22 20 19 24 24 C 1.39609 * 119.69641 * 0.24897 * 19 18 17 25 25 C 1.50705 * 120.07258 * 180.02562 * 24 19 18 26 26 C 1.37969 * 119.85322 * 0.02562 * 24 19 18 27 27 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46712 * 299.99868 * 1 2 3 29 29 H 1.08993 * 109.47353 * 60.00172 * 1 2 3 30 30 H 1.09003 * 109.46668 * 239.99615 * 2 1 3 31 31 H 1.09001 * 109.46785 * 120.00075 * 2 1 3 32 32 H 1.08992 * 109.47053 * 35.00176 * 4 3 2 33 33 H 1.08999 * 109.46735 * 155.00122 * 4 3 2 34 34 H 0.96998 * 120.00374 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.93211 * 0.02562 * 17 16 13 36 36 H 1.07996 * 120.07831 * 179.75332 * 18 17 16 37 37 H 1.09002 * 109.47119 * 300.00179 * 23 22 20 38 38 H 1.09005 * 109.47184 * 59.99971 * 23 22 20 39 39 H 1.08995 * 109.47353 * 180.02562 * 23 22 20 40 40 H 1.08996 * 109.46975 * 83.43010 * 25 24 19 41 41 H 1.09001 * 109.46927 * 203.42362 * 25 24 19 42 42 H 1.08997 * 109.47202 * 323.42134 * 25 24 19 43 43 H 1.07994 * 119.92759 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4947 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3840 7 6 3.8529 2.3612 -3.0845 8 7 3.0280 3.1861 -3.6917 9 14 5.5093 1.9640 -3.8515 10 1 5.3730 0.7814 -4.7391 11 1 5.9787 3.1277 -4.6457 12 1 6.4929 1.6674 -2.7791 13 16 2.4122 2.1202 1.4286 14 8 3.3285 3.1569 1.1048 15 8 2.7096 1.0799 2.3499 16 6 0.9556 2.9118 2.0253 17 6 0.6803 4.2167 1.6557 18 6 -0.4555 4.8442 2.1233 19 6 -1.3341 4.1560 2.9627 20 6 -2.5552 4.8199 3.4633 21 8 -3.3737 4.1865 4.0991 22 8 -2.7608 6.1278 3.2147 23 6 -3.9820 6.7141 3.7376 24 6 -1.0531 2.8379 3.3269 25 6 -1.9957 2.0871 4.2319 26 6 0.0895 2.2242 2.8565 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8096 -1.9453 33 1 2.0922 3.1802 -1.0757 34 1 3.2798 3.5885 -4.5375 35 1 1.3581 4.7463 1.0026 36 1 -0.6671 5.8639 1.8373 37 1 -4.8433 6.1967 3.3152 38 1 -3.9960 6.6166 4.8232 39 1 -4.0235 7.7691 3.4668 40 1 -2.8084 1.6654 3.6405 41 1 -1.4558 1.2834 4.7325 42 1 -2.4046 2.7694 4.9771 43 1 0.3083 1.2047 3.1378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266205726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -128.798612 kcal Electronic energy + Delta-G solvation = -28213.216879 eV Core-core repulsion = 24158.037513 eV Total energy + Delta-G solvation = -4055.179366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97104 -39.07274 -36.80330 -36.76113 -36.12463 -35.28041 -32.91083 -32.70564 -31.92102 -30.03738 -28.28747 -27.10155 -26.65839 -24.50709 -23.16082 -22.23337 -21.79460 -21.18878 -18.39368 -18.20352 -17.42485 -17.23581 -16.73695 -16.64081 -16.26174 -15.86882 -15.23136 -14.87384 -14.41871 -14.23587 -14.11519 -13.90048 -13.47916 -13.33191 -13.23320 -13.17069 -12.87796 -12.47707 -12.39406 -12.36313 -12.13376 -12.00209 -11.73644 -11.55262 -11.44379 -11.32508 -11.11502 -11.04343 -10.91566 -10.87267 -10.52458 -10.46227 -10.26169 -10.02017 -9.79421 -9.50125 -8.95007 -8.46917 -8.13932 -6.08827 -4.12855 0.12767 0.91292 1.14390 2.13270 2.34937 3.28729 3.30872 3.37527 3.43259 3.66504 4.23517 4.38678 4.42261 4.44681 4.60307 4.78080 4.84323 4.86282 5.11363 5.16153 5.19580 5.25513 5.34908 5.38587 5.52543 5.57518 5.65809 5.69443 5.71448 5.84986 5.91552 5.94759 6.02308 6.02602 6.24642 6.28862 6.55220 6.58624 6.60733 7.18173 7.33489 7.41286 7.54206 7.88483 8.16450 8.89528 9.52547 10.99726 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.003316 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.149498 B = 8442.387412 C = 9146.576974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 N -0.977 5.977 4 C 0.255 3.745 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.680 3.320 14 O -0.936 6.936 15 O -0.971 6.971 16 C -0.635 4.635 17 C -0.037 4.037 18 C -0.078 4.078 19 C -0.091 4.091 20 C 0.508 3.492 21 O -0.496 6.496 22 O -0.353 6.353 23 C 0.037 3.963 24 C -0.043 4.043 25 C -0.123 4.123 26 C -0.037 4.037 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 2.169 13.135 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 N -0.818 5.818 4 C 0.134 3.866 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.767 3.233 14 O -0.926 6.926 15 O -0.962 6.962 16 C -0.717 4.717 17 C -0.055 4.055 18 C -0.097 4.097 19 C -0.093 4.093 20 C 0.353 3.647 21 O -0.386 6.386 22 O -0.269 6.269 23 C -0.057 4.057 24 C -0.044 4.044 25 C -0.179 4.179 26 C -0.056 4.056 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.697 2.154 13.574 18.711 hybrid contribution -0.143 0.253 -0.567 0.637 sum -12.840 2.407 13.007 18.434 Atomic orbital electron populations 1.22295 0.97224 1.01678 1.02185 1.21230 0.93097 0.82816 1.03946 1.57438 1.81038 1.21208 1.22076 1.19128 0.97662 0.91241 0.78596 1.21473 1.01986 1.27779 1.05587 0.91999 1.24917 0.97373 0.94776 0.96853 1.69911 1.36133 1.30190 1.17192 0.86515 0.83996 0.77842 0.79234 1.20642 1.21075 1.19640 1.02514 0.74084 0.73758 0.72992 1.93619 1.57984 1.57757 1.83231 1.93506 1.82960 1.56353 1.63336 1.31948 1.23557 1.06567 1.09657 1.21040 0.96037 0.92541 0.95928 1.21570 0.92979 1.00348 0.94840 1.19167 0.93942 0.94398 1.01753 1.21225 0.86046 0.80469 0.76926 1.90796 1.45381 1.64954 1.37422 1.86569 1.43359 1.25107 1.71873 1.23308 0.84173 0.98585 0.99598 1.20088 0.95583 0.92211 0.96502 1.21126 0.97768 1.00089 0.98890 1.20789 0.91566 0.99762 0.93501 0.91958 0.93420 0.91805 0.89212 0.90253 0.94355 0.94302 0.92658 0.82932 0.83595 0.91698 0.91758 0.87812 0.90278 0.91491 0.89014 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.12 1.89 6.40 -4.04 -0.03 1.87 16 3 N -0.98 -19.29 2.77 -115.66 -0.32 -19.61 16 4 C 0.26 6.07 5.10 -5.19 -0.03 6.05 16 5 C -0.53 -14.27 9.38 -34.44 -0.32 -14.60 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 S 2.68 51.37 5.64 -107.50 -0.61 50.77 16 14 O -0.94 -21.18 16.25 -57.17 -0.93 -22.11 16 15 O -0.97 -19.03 15.82 -57.17 -0.90 -19.94 16 16 C -0.63 -10.08 5.98 -39.49 -0.24 -10.32 16 17 C -0.04 -0.55 9.50 -39.64 -0.38 -0.92 16 18 C -0.08 -1.01 9.62 -39.17 -0.38 -1.39 16 19 C -0.09 -1.20 5.87 -104.98 -0.62 -1.81 16 20 C 0.51 6.29 7.83 34.61 0.27 6.56 16 21 O -0.50 -6.62 13.14 -19.25 -0.25 -6.87 16 22 O -0.35 -3.76 9.84 -40.51 -0.40 -4.16 16 23 C 0.04 0.27 10.56 101.05 1.07 1.33 16 24 C -0.04 -0.56 5.92 -104.21 -0.62 -1.17 16 25 C -0.12 -1.34 8.73 36.01 0.31 -1.03 16 26 C -0.04 -0.52 8.03 -39.64 -0.32 -0.84 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.61 7.00 -51.93 -0.36 0.25 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 31 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 32 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.15 2.26 7.61 -52.49 -0.40 1.86 16 36 H 0.15 1.54 7.63 -52.49 -0.40 1.14 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 42 H 0.09 1.06 5.85 -51.93 -0.30 0.75 16 43 H 0.15 1.83 7.60 -52.49 -0.40 1.43 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -32.76 375.65 -8.98 -41.74 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.96 Total: -0.54 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.98 Total: -16.64 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.42 Total: -44.20 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.48 Total: -53.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 51.37 SS G_CDS: -0.61 Total: 50.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.76 -8.98 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266205726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.060 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds