Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47176 * 2 1 4 4 C 1.36937 * 119.99625 * 275.78283 * 3 2 1 5 5 H 1.07999 * 120.00037 * 173.24773 * 4 3 2 6 6 C 1.38819 * 120.00044 * 353.23710 * 4 3 2 7 7 N 1.31616 * 119.99630 * 31.32107 * 6 4 3 8 8 Si 1.86793 * 119.99812 * 211.31760 * 6 4 3 9 9 H 1.48503 * 109.47380 * 90.00584 * 8 6 4 10 10 H 1.48506 * 109.47153 * 210.00555 * 8 6 4 11 11 H 1.48504 * 109.47617 * 330.00277 * 8 6 4 12 12 S 1.65590 * 120.00020 * 95.77948 * 3 2 1 13 13 O 1.42105 * 106.40185 * 212.48304 * 12 3 2 14 14 O 1.42103 * 106.40540 * 345.40207 * 12 3 2 15 15 C 1.76201 * 107.21999 * 98.94241 * 12 3 2 16 16 C 1.37971 * 119.92494 * 116.90117 * 15 12 3 17 17 C 1.39606 * 119.84294 * 179.75340 * 16 15 12 18 18 C 1.47731 * 120.14547 * 180.24913 * 17 16 15 19 19 O 1.21469 * 120.00093 * 0.27490 * 18 17 16 20 20 O 1.34708 * 119.99854 * 180.27533 * 18 17 16 21 21 C 1.45204 * 117.00086 * 180.02562 * 20 18 17 22 22 C 1.39646 * 119.70291 * 0.52360 * 17 16 15 23 23 C 1.37921 * 119.84889 * 359.72840 * 22 17 16 24 24 C 1.50701 * 119.92367 * 180.02562 * 23 22 17 25 25 C 1.38345 * 119.92277 * 297.17949 * 15 12 3 26 26 C 1.50699 * 119.85214 * 359.97438 * 25 15 12 27 27 H 1.08997 * 109.47247 * 60.00332 * 1 2 3 28 28 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47070 * 300.00305 * 1 2 3 30 30 H 1.08997 * 109.47032 * 239.99702 * 2 1 3 31 31 H 1.09003 * 109.46950 * 119.99992 * 2 1 3 32 32 H 0.97005 * 119.99240 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.07464 * 0.02562 * 16 15 12 34 34 H 1.09003 * 109.47086 * 179.97438 * 21 20 18 35 35 H 1.09001 * 109.46880 * 299.99671 * 21 20 18 36 36 H 1.08993 * 109.47175 * 59.99895 * 21 20 18 37 37 H 1.08002 * 120.07422 * 179.70922 * 22 17 16 38 38 H 1.08998 * 109.47007 * 270.01764 * 24 23 22 39 39 H 1.08995 * 109.47208 * 30.01959 * 24 23 22 40 40 H 1.09006 * 109.46913 * 150.02269 * 24 23 22 41 41 H 1.09001 * 109.46955 * 83.38964 * 26 25 15 42 42 H 1.08996 * 109.47446 * 203.39547 * 26 25 15 43 43 H 1.09007 * 109.46681 * 323.39613 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1339 2.0665 -1.1799 5 1 2.3886 3.1160 -1.1721 6 6 1.9240 1.4122 -2.3861 7 7 1.0691 0.4137 -2.4529 8 14 2.8546 1.9490 -3.9141 9 1 4.1282 1.1913 -4.0098 10 1 2.0271 1.6802 -5.1176 11 1 3.1483 3.4022 -3.8300 12 16 2.4305 2.1137 1.4268 13 8 2.1211 3.4922 1.2742 14 8 1.8900 1.3060 2.4634 15 6 4.1830 2.0111 1.5786 16 6 4.9404 3.1640 1.6042 17 6 6.3283 3.0809 1.7298 18 6 7.1452 4.3113 1.7634 19 8 6.6091 5.3986 1.6868 20 8 8.4847 4.2275 1.8791 21 6 9.2235 5.4772 1.9062 22 6 6.9413 1.8293 1.8177 23 6 6.1727 0.6846 1.7856 24 6 6.8324 -0.6669 1.8809 25 6 4.7968 0.7743 1.6662 26 6 3.9635 -0.4808 1.6318 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9221 -0.0433 -3.2958 33 1 4.4602 4.1287 1.5317 34 1 10.2888 5.2674 2.0027 35 1 9.0432 6.0259 0.9818 36 1 8.8932 6.0762 2.7547 37 1 8.0150 1.7578 1.9103 38 1 7.0788 -1.0223 0.8804 39 1 7.7444 -0.5852 2.4722 40 1 6.1512 -1.3709 2.3590 41 1 3.7506 -0.7473 0.5966 42 1 4.5100 -1.2930 2.1111 43 1 3.0271 -0.3098 2.1630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267003167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -109.174037 kcal Electronic energy + Delta-G solvation = -29081.036998 eV Core-core repulsion = 25026.708618 eV Total energy + Delta-G solvation = -4054.328380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.51758 -39.07276 -36.54349 -36.35562 -36.05340 -34.66231 -33.32345 -32.26520 -31.68248 -29.40183 -28.59357 -27.22449 -26.52461 -24.62560 -22.93355 -22.45870 -21.65422 -20.07467 -18.59399 -18.06668 -17.24258 -16.82700 -16.60995 -16.35589 -15.56160 -15.47673 -15.22847 -14.71272 -14.32713 -14.12044 -13.72627 -13.48606 -13.36551 -13.17627 -12.95148 -12.84632 -12.62621 -12.42901 -12.21510 -12.05209 -11.79715 -11.70474 -11.45798 -11.32243 -11.17616 -10.98209 -10.91512 -10.86988 -10.78269 -10.66860 -10.48249 -10.45769 -10.07998 -9.82154 -9.63380 -9.09092 -8.91244 -8.49343 -8.22572 -6.61195 -3.86342 0.77922 1.25914 1.53862 2.55017 2.66406 3.11745 3.19787 3.24036 3.70493 3.99331 4.37273 4.61458 4.66916 4.76573 4.91253 4.97646 5.04024 5.06447 5.18061 5.22502 5.30874 5.39588 5.57060 5.59267 5.72722 5.87724 5.90902 5.97672 6.04294 6.12931 6.21890 6.31829 6.40894 6.45020 6.57014 6.64469 6.66360 6.83641 7.00304 7.08488 7.22720 7.49946 7.76546 7.77605 8.30471 8.69509 9.10483 10.33609 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004707 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.280276 B = 5947.650556 C = 6564.484160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.122 3.878 3 N -0.814 5.814 4 C -0.285 4.285 5 H 0.116 0.884 6 C 0.056 3.944 7 N -0.814 5.814 8 Si 0.889 3.111 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.265 1.265 12 S 2.579 3.421 13 O -0.973 6.973 14 O -0.988 6.988 15 C -0.672 4.672 16 C 0.036 3.964 17 C -0.161 4.161 18 C 0.512 3.488 19 O -0.504 6.504 20 O -0.358 6.358 21 C 0.037 3.963 22 C -0.028 4.028 23 C -0.130 4.130 24 C -0.113 4.113 25 C 0.054 3.946 26 C -0.184 4.184 27 H 0.092 0.908 28 H 0.038 0.962 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.273 0.727 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.043 -3.072 4.608 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.003 4.003 3 N -0.642 5.642 4 C -0.426 4.426 5 H 0.134 0.866 6 C -0.156 4.156 7 N -0.453 5.453 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.189 1.189 12 S 2.673 3.327 13 O -0.962 6.962 14 O -0.977 6.977 15 C -0.749 4.749 16 C 0.016 3.984 17 C -0.163 4.163 18 C 0.357 3.643 19 O -0.392 6.392 20 O -0.275 6.275 21 C -0.057 4.057 22 C -0.046 4.046 23 C -0.131 4.131 24 C -0.169 4.169 25 C 0.053 3.947 26 C -0.239 4.239 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.396 -2.458 5.320 12.814 hybrid contribution 1.512 0.384 -1.107 1.913 sum 12.907 -2.074 4.213 13.735 Atomic orbital electron populations 1.22041 0.96224 0.99819 1.02110 1.21512 0.95144 0.82522 1.01101 1.53774 1.64675 1.23063 1.22718 1.19543 1.45873 0.94541 0.82671 0.86620 1.25254 0.95400 0.95832 0.99069 1.70276 1.25357 1.22277 1.27407 0.86519 0.80653 0.80124 0.81302 1.20080 1.20777 1.18944 1.08682 0.75458 0.74186 0.74410 1.93414 1.83392 1.33092 1.86349 1.93352 1.78263 1.69225 1.56897 1.32445 1.32728 0.96787 1.12906 1.21022 0.91224 0.98877 0.87233 1.19096 0.93311 0.90779 1.13088 1.21244 0.80877 0.89490 0.72678 1.90844 1.72931 1.29631 1.45836 1.86532 1.20180 1.36584 1.84251 1.23254 0.95482 0.84278 1.02702 1.21338 0.99853 0.90778 0.92666 1.19818 0.93311 0.95671 1.04290 1.20836 1.00305 0.93283 1.02487 1.19619 0.93234 0.93980 0.87853 1.22075 1.02131 0.94834 1.04852 0.88888 0.94265 0.95530 0.88839 0.92893 0.91618 0.83260 0.88136 0.91796 0.91876 0.84629 0.90990 0.91638 0.90740 0.88477 0.90080 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.64 37.16 0.36 -2.63 16 2 C 0.12 2.57 3.86 -4.04 -0.02 2.56 16 3 N -0.81 -18.73 2.82 -59.90 -0.17 -18.90 16 4 C -0.29 -6.94 9.41 -15.06 -0.14 -7.08 16 5 H 0.12 2.89 7.49 -52.49 -0.39 2.50 16 6 C 0.06 1.30 5.00 -17.43 -0.09 1.22 16 7 N -0.81 -18.61 8.31 55.49 0.46 -18.15 16 8 Si 0.89 18.31 29.65 -169.99 -5.04 13.27 16 9 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 S 2.58 59.05 5.00 -107.50 -0.54 58.51 16 13 O -0.97 -24.95 16.01 -57.17 -0.92 -25.86 16 14 O -0.99 -23.00 14.52 -57.17 -0.83 -23.83 16 15 C -0.67 -13.67 5.89 -39.64 -0.23 -13.91 16 16 C 0.04 0.71 9.09 -39.17 -0.36 0.36 16 17 C -0.16 -2.82 5.87 -104.98 -0.62 -3.43 16 18 C 0.51 8.61 7.90 34.61 0.27 8.88 16 19 O -0.50 -9.69 16.14 -19.24 -0.31 -10.00 16 20 O -0.36 -4.87 9.82 -40.51 -0.40 -5.26 16 21 C 0.04 0.36 10.56 101.05 1.07 1.43 16 22 C -0.03 -0.42 9.27 -39.17 -0.36 -0.78 16 23 C -0.13 -1.96 5.87 -104.68 -0.61 -2.57 16 24 C -0.11 -1.23 9.58 36.01 0.35 -0.88 16 25 C 0.05 0.96 5.88 -104.53 -0.61 0.34 16 26 C -0.18 -2.90 7.49 36.00 0.27 -2.63 16 27 H 0.09 2.13 6.25 -51.93 -0.32 1.81 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 2.00 5.87 -51.93 -0.30 1.70 16 31 H 0.05 1.00 4.13 -51.93 -0.21 0.79 16 32 H 0.27 5.86 8.31 -40.82 -0.34 5.52 16 33 H 0.15 3.12 6.92 -52.49 -0.36 2.75 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.14 1.62 7.61 -52.49 -0.40 1.22 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.07 0.74 5.87 -51.93 -0.30 0.44 16 41 H 0.10 1.52 6.52 -51.93 -0.34 1.18 16 42 H 0.08 1.00 5.69 -51.93 -0.30 0.70 16 43 H 0.11 1.98 3.99 -51.92 -0.21 1.78 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -29.57 354.49 -8.36 -37.93 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.24 Total: 6.09 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.73 Total: -19.13 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.29 Total: -37.05 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -2.45 Total: -64.96 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Atomic # 16 Polarization: 59.05 SS G_CDS: -0.54 Total: 58.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.57 -8.36 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267003167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.243 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds