Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47176 * 2 1 4 4 C 1.36937 * 119.99625 * 275.78283 * 3 2 1 5 5 H 1.07999 * 120.00037 * 173.24773 * 4 3 2 6 6 C 1.38819 * 120.00044 * 353.23710 * 4 3 2 7 7 N 1.31616 * 119.99630 * 31.32107 * 6 4 3 8 8 Si 1.86793 * 119.99812 * 211.31760 * 6 4 3 9 9 H 1.48503 * 109.47380 * 90.00584 * 8 6 4 10 10 H 1.48506 * 109.47153 * 210.00555 * 8 6 4 11 11 H 1.48504 * 109.47617 * 330.00277 * 8 6 4 12 12 S 1.65590 * 120.00020 * 95.77948 * 3 2 1 13 13 O 1.42105 * 106.40185 * 212.48304 * 12 3 2 14 14 O 1.42103 * 106.40540 * 345.40207 * 12 3 2 15 15 C 1.76201 * 107.21999 * 98.94241 * 12 3 2 16 16 C 1.37971 * 119.92494 * 116.90117 * 15 12 3 17 17 C 1.39606 * 119.84294 * 179.75340 * 16 15 12 18 18 C 1.47731 * 120.14547 * 180.24913 * 17 16 15 19 19 O 1.21469 * 120.00093 * 0.27490 * 18 17 16 20 20 O 1.34708 * 119.99854 * 180.27533 * 18 17 16 21 21 C 1.45204 * 117.00086 * 180.02562 * 20 18 17 22 22 C 1.39646 * 119.70291 * 0.52360 * 17 16 15 23 23 C 1.37921 * 119.84889 * 359.72840 * 22 17 16 24 24 C 1.50701 * 119.92367 * 180.02562 * 23 22 17 25 25 C 1.38345 * 119.92277 * 297.17949 * 15 12 3 26 26 C 1.50699 * 119.85214 * 359.97438 * 25 15 12 27 27 H 1.08997 * 109.47247 * 60.00332 * 1 2 3 28 28 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47070 * 300.00305 * 1 2 3 30 30 H 1.08997 * 109.47032 * 239.99702 * 2 1 3 31 31 H 1.09003 * 109.46950 * 119.99992 * 2 1 3 32 32 H 0.97005 * 119.99240 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.07464 * 0.02562 * 16 15 12 34 34 H 1.09003 * 109.47086 * 179.97438 * 21 20 18 35 35 H 1.09001 * 109.46880 * 299.99671 * 21 20 18 36 36 H 1.08993 * 109.47175 * 59.99895 * 21 20 18 37 37 H 1.08002 * 120.07422 * 179.70922 * 22 17 16 38 38 H 1.08998 * 109.47007 * 270.01764 * 24 23 22 39 39 H 1.08995 * 109.47208 * 30.01959 * 24 23 22 40 40 H 1.09006 * 109.46913 * 150.02269 * 24 23 22 41 41 H 1.09001 * 109.46955 * 83.38964 * 26 25 15 42 42 H 1.08996 * 109.47446 * 203.39547 * 26 25 15 43 43 H 1.09007 * 109.46681 * 323.39613 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1339 2.0665 -1.1799 5 1 2.3886 3.1160 -1.1721 6 6 1.9240 1.4122 -2.3861 7 7 1.0691 0.4137 -2.4529 8 14 2.8546 1.9490 -3.9141 9 1 4.1282 1.1913 -4.0098 10 1 2.0271 1.6802 -5.1176 11 1 3.1483 3.4022 -3.8300 12 16 2.4305 2.1137 1.4268 13 8 2.1211 3.4922 1.2742 14 8 1.8900 1.3060 2.4634 15 6 4.1830 2.0111 1.5786 16 6 4.9404 3.1640 1.6042 17 6 6.3283 3.0809 1.7298 18 6 7.1452 4.3113 1.7634 19 8 6.6091 5.3986 1.6868 20 8 8.4847 4.2275 1.8791 21 6 9.2235 5.4772 1.9062 22 6 6.9413 1.8293 1.8177 23 6 6.1727 0.6846 1.7856 24 6 6.8324 -0.6669 1.8809 25 6 4.7968 0.7743 1.6662 26 6 3.9635 -0.4808 1.6318 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9221 -0.0433 -3.2958 33 1 4.4602 4.1287 1.5317 34 1 10.2888 5.2674 2.0027 35 1 9.0432 6.0259 0.9818 36 1 8.8932 6.0762 2.7547 37 1 8.0150 1.7578 1.9103 38 1 7.0788 -1.0223 0.8804 39 1 7.7444 -0.5852 2.4722 40 1 6.1512 -1.3709 2.3590 41 1 3.7506 -0.7473 0.5966 42 1 4.5100 -1.2930 2.1111 43 1 3.0271 -0.3098 2.1630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267003167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -127.070553 kcal Electronic energy + Delta-G solvation = -29081.813049 eV Core-core repulsion = 25026.708618 eV Total energy + Delta-G solvation = -4055.104431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.78949 -40.37091 -38.29480 -37.90841 -37.63208 -36.66230 -34.63794 -33.62040 -33.34958 -31.10507 -29.74707 -28.23653 -27.65565 -26.38742 -24.25282 -23.88820 -23.30894 -21.34979 -20.34377 -19.52944 -18.79991 -18.44615 -18.15816 -17.51081 -17.08702 -16.98011 -16.55476 -16.41200 -15.99170 -15.36719 -15.28936 -14.83500 -14.60534 -14.48818 -14.35417 -14.30471 -13.91541 -13.71927 -13.50773 -13.31051 -13.15860 -13.08753 -12.99095 -12.94880 -12.83843 -12.63204 -12.60679 -12.50936 -12.28735 -12.13845 -11.91465 -11.83344 -11.77438 -11.45952 -11.27717 -10.79492 -10.35532 -9.93946 -9.78975 -8.29886 -5.69670 -0.57687 -0.34284 -0.08630 1.23261 1.45043 1.50368 1.51862 1.57824 2.21269 2.39617 2.65060 2.82600 3.09873 3.46662 3.51111 3.71166 3.76486 3.93131 4.16394 4.21425 4.27889 4.28760 4.41397 4.50728 4.58369 4.64963 4.65552 4.71736 4.84360 4.88746 4.92244 4.96043 5.06551 5.08971 5.14902 5.16640 5.25592 5.37721 5.39318 5.49946 5.73829 5.82817 6.02329 6.51832 6.56417 6.94637 7.35788 8.66750 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004707 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.280276 B = 5947.650556 C = 6564.484160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.124 3.876 3 N -0.833 5.833 4 C -0.334 4.334 5 H 0.091 0.909 6 C 0.033 3.967 7 N -0.837 5.837 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.280 1.280 12 S 2.623 3.377 13 O -1.010 7.010 14 O -0.993 6.993 15 C -0.693 4.693 16 C 0.010 3.990 17 C -0.169 4.169 18 C 0.515 3.485 19 O -0.539 6.539 20 O -0.348 6.348 21 C 0.027 3.973 22 C -0.009 4.009 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.044 3.956 26 C -0.186 4.186 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.276 0.724 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.178 0.822 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.854 -5.403 5.584 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 N -0.664 5.664 4 C -0.470 4.470 5 H 0.109 0.891 6 C -0.176 4.176 7 N -0.475 5.475 8 Si 0.766 3.234 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.205 1.205 12 S 2.719 3.281 13 O -1.000 7.000 14 O -0.983 6.983 15 C -0.775 4.775 16 C -0.009 4.009 17 C -0.171 4.171 18 C 0.362 3.638 19 O -0.430 6.430 20 O -0.264 6.264 21 C -0.066 4.066 22 C -0.027 4.027 23 C -0.120 4.120 24 C -0.169 4.169 25 C 0.042 3.958 26 C -0.242 4.242 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.195 0.805 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.142 0.858 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.141 -4.809 6.192 17.050 hybrid contribution 0.559 1.173 -1.093 1.697 sum 15.700 -3.636 5.099 16.903 Atomic orbital electron populations 1.22037 0.96703 1.00999 1.00393 1.21634 0.94875 0.81603 1.01948 1.53239 1.68327 1.23481 1.21329 1.19266 1.49680 0.94349 0.83726 0.89134 1.25560 0.95476 0.96359 1.00165 1.70310 1.25950 1.23399 1.27877 0.85758 0.79791 0.78769 0.79110 1.19447 1.20187 1.20478 1.05504 0.75949 0.72952 0.73738 1.93387 1.84533 1.35186 1.86897 1.93368 1.78977 1.69192 1.56736 1.31650 1.29979 0.98828 1.17078 1.20879 0.93018 0.97732 0.89294 1.19200 0.92251 0.92610 1.13018 1.21173 0.82007 0.88654 0.71969 1.90833 1.73856 1.30798 1.47524 1.86506 1.18158 1.38417 1.83346 1.23668 0.97131 0.83093 1.02659 1.21833 1.01834 0.89294 0.89757 1.20333 0.92024 0.98066 1.01588 1.20997 1.01396 0.90399 1.04112 1.19963 0.95128 0.93179 0.87497 1.22128 1.01538 0.95360 1.05135 0.91142 0.91653 0.96572 0.88983 0.90775 0.91361 0.85760 0.83830 0.92100 0.91844 0.80471 0.89474 0.88756 0.89474 0.88347 0.85841 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.64 71.98 0.69 -5.39 16 2 C 0.12 5.29 3.86 86.38 0.33 5.62 16 3 N -0.83 -39.86 2.82 -343.43 -0.97 -40.83 16 4 C -0.33 -17.23 9.41 84.04 0.79 -16.44 16 5 H 0.09 4.95 7.49 -2.91 -0.02 4.93 16 6 C 0.03 1.61 5.00 84.86 0.42 2.03 16 7 N -0.84 -39.39 8.31 21.65 0.18 -39.21 16 8 Si 0.94 38.85 29.65 68.60 2.03 40.89 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 S 2.62 124.57 5.00 -56.49 -0.28 124.29 16 13 O -1.01 -55.08 16.01 -128.00 -2.05 -57.13 16 14 O -0.99 -46.84 14.52 -128.00 -1.86 -48.70 16 15 C -0.69 -28.43 5.89 22.23 0.13 -28.30 16 16 C 0.01 0.43 9.09 22.54 0.20 0.63 16 17 C -0.17 -5.70 5.87 -20.10 -0.12 -5.82 16 18 C 0.52 16.80 7.90 70.33 0.56 17.35 16 19 O -0.54 -21.05 16.14 19.94 0.32 -20.73 16 20 O -0.35 -8.41 9.82 -56.17 -0.55 -8.96 16 21 C 0.03 0.46 10.56 113.37 1.20 1.66 16 22 C -0.01 -0.24 9.27 22.53 0.21 -0.03 16 23 C -0.12 -3.09 5.87 -19.90 -0.12 -3.20 16 24 C -0.11 -1.77 9.58 71.24 0.68 -1.08 16 25 C 0.04 1.45 5.88 -19.80 -0.12 1.34 16 26 C -0.19 -5.41 7.49 71.24 0.53 -4.88 16 27 H 0.07 3.36 6.25 -2.39 -0.01 3.34 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 29 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 3.99 5.87 -2.39 -0.01 3.97 16 31 H 0.07 2.78 4.13 -2.39 -0.01 2.77 16 32 H 0.28 12.09 8.31 -92.70 -0.77 11.32 16 33 H 0.12 5.61 6.92 -2.91 -0.02 5.59 16 34 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.18 3.12 7.61 -2.91 -0.02 3.10 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 40 H 0.09 1.19 5.87 -2.38 -0.01 1.17 16 41 H 0.10 2.89 6.52 -2.39 -0.02 2.87 16 42 H 0.12 2.47 5.69 -2.39 -0.01 2.46 16 43 H 0.09 3.10 3.99 -2.38 -0.01 3.09 16 Total: -1.00 -68.68 354.49 3.29 -65.39 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.06 Total: 21.48 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 5.41 Total: -36.50 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -0.79 Total: -80.04 kcal Atomic # 8 Polarization: -131.37 SS G_CDS: -4.14 Total: -135.51 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 124.57 SS G_CDS: -0.28 Total: 124.29 kcal Total: -68.68 3.29 -65.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267003167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.677 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds