Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99936 * 2 1 4 4 C 1.34772 * 120.00248 * 180.02562 * 2 1 3 5 5 O 1.21593 * 119.99858 * 5.36392 * 4 2 1 6 6 C 1.47535 * 120.00254 * 185.36791 * 4 2 1 7 7 C 1.39709 * 120.18809 * 22.35790 * 6 4 2 8 8 C 1.37787 * 119.90477 * 179.97438 * 7 6 4 9 9 C 1.38552 * 120.30260 * 359.97438 * 8 7 6 10 10 C 1.38051 * 120.38986 * 0.02562 * 9 8 7 11 11 C 1.38710 * 120.08448 * 359.74567 * 10 9 8 12 12 O 1.35652 * 120.15368 * 180.28136 * 11 10 9 13 13 S 1.52205 * 113.99771 * 270.22500 * 12 11 10 14 14 O 1.42103 * 104.27610 * 191.06968 * 13 12 11 15 15 O 1.42095 * 104.27715 * 318.92808 * 13 12 11 16 16 C 1.81398 * 104.44444 * 75.00024 * 13 12 11 17 17 C 1.53002 * 109.46934 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47315 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47056 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00082 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99664 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00279 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47381 * 89.99861 * 23 21 19 25 25 H 1.48505 * 109.46769 * 209.99894 * 23 21 19 26 26 H 1.48497 * 109.47222 * 329.99643 * 23 21 19 27 27 H 1.08997 * 109.47446 * 90.00147 * 1 2 3 28 28 H 1.09002 * 109.47200 * 329.99734 * 1 2 3 29 29 H 1.09001 * 109.47344 * 209.99904 * 1 2 3 30 30 H 1.09001 * 109.47370 * 84.04511 * 3 2 1 31 31 H 1.08996 * 109.47386 * 204.04595 * 3 2 1 32 32 H 1.09003 * 109.46985 * 324.04963 * 3 2 1 33 33 H 1.08000 * 120.05095 * 359.95444 * 7 6 4 34 34 H 1.08004 * 119.85290 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.80675 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.96141 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47566 * 299.99780 * 16 13 12 38 38 H 1.08997 * 109.47552 * 60.00111 * 16 13 12 39 39 H 1.08998 * 109.47752 * 299.99903 * 17 16 13 40 40 H 1.09007 * 109.47194 * 60.00205 * 17 16 13 41 41 H 1.09003 * 109.46884 * 299.99912 * 18 17 16 42 42 H 1.08997 * 109.47373 * 60.00137 * 18 17 16 43 43 H 0.96994 * 120.00141 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5349 -2.2178 -0.0994 6 6 3.6094 -1.1700 0.1190 7 6 4.2702 -0.0775 0.6860 8 6 5.6437 -0.0865 0.7952 9 6 6.3736 -1.1750 0.3456 10 6 5.7332 -2.2611 -0.2166 11 6 4.3508 -2.2710 -0.3302 12 8 3.7198 -3.3400 -0.8773 13 16 3.5357 -3.2451 -2.3852 14 8 2.6446 -4.3072 -2.6969 15 8 3.1681 -1.8909 -2.6089 16 6 5.1846 -3.5776 -3.0641 17 6 5.1302 -3.5108 -4.5917 18 6 6.5208 -3.7919 -5.1645 19 6 6.4672 -3.7254 -6.6691 20 1 5.5345 -3.5052 -7.1670 21 6 7.6087 -3.9468 -7.4099 22 7 8.7445 -4.2155 -6.8036 23 14 7.5425 -3.8637 -9.2749 24 1 7.8227 -2.4747 -9.7189 25 1 8.5601 -4.7813 -9.8477 26 1 6.1921 -4.2694 -9.7408 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5138 30 1 2.2868 1.6367 1.0221 31 1 3.1918 1.1142 -0.4187 32 1 1.6586 1.9994 -0.6033 33 1 3.7054 0.7732 1.0379 34 1 6.1538 0.7587 1.2333 35 1 7.4499 -1.1735 0.4348 36 1 6.3090 -3.1061 -0.5644 37 1 5.8878 -2.8323 -2.6924 38 1 5.5111 -4.5708 -2.7557 39 1 4.4272 -4.2564 -4.9633 40 1 4.8035 -2.5177 -4.9006 41 1 7.2241 -3.0465 -4.7930 42 1 6.8470 -4.7850 -4.8557 43 1 9.5476 -4.3709 -7.3248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267526323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = -89.873694 kcal Electronic energy + Delta-G solvation = -28420.546853 eV Core-core repulsion = 24367.055398 eV Total energy + Delta-G solvation = -4053.491455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61364 -39.65684 -38.16256 -36.95332 -35.85170 -35.83892 -34.73765 -32.32390 -32.03688 -30.72385 -28.31554 -27.88121 -26.81092 -24.07486 -23.79839 -23.27930 -21.19614 -20.61936 -19.70634 -18.29973 -17.70081 -17.51178 -17.30996 -16.54838 -16.16816 -16.02823 -15.73495 -15.34162 -15.17574 -14.67834 -14.49420 -14.17535 -13.89346 -13.58000 -13.26784 -13.18283 -12.85958 -12.74538 -12.59920 -12.39436 -12.35124 -12.26079 -12.06896 -11.98164 -11.85331 -11.82715 -11.34478 -11.24054 -10.93564 -10.87139 -10.41717 -10.10838 -9.98056 -9.47268 -9.41834 -9.27345 -9.12906 -8.93385 -8.42180 -6.07272 -4.10246 0.00916 0.51085 0.87929 2.22414 2.51554 2.70206 3.29608 3.30361 3.35774 3.40327 3.85896 4.05033 4.11822 4.25391 4.41343 4.50435 4.61746 4.66132 4.80637 4.87707 4.90120 4.99893 5.06979 5.11363 5.27194 5.29230 5.31490 5.38414 5.58774 5.62437 5.66660 5.80584 5.83709 5.90079 6.14821 6.23026 6.37831 6.40025 6.83579 7.00836 7.54528 7.64339 7.90603 7.90671 8.31020 8.95774 9.54511 11.04005 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.003079 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.905082 B = 9092.911394 C = 9630.517841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.613 5.613 3 C 0.059 3.941 4 C 0.563 3.437 5 O -0.521 6.521 6 C -0.115 4.115 7 C -0.096 4.096 8 C -0.116 4.116 9 C -0.073 4.073 10 C -0.139 4.139 11 C 0.131 3.869 12 O -0.653 6.653 13 S 2.583 3.417 14 O -0.924 6.924 15 O -0.956 6.956 16 C -0.637 4.637 17 C -0.103 4.103 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 13.620 20.651 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.347 5.347 3 C -0.083 4.083 4 C 0.352 3.648 5 O -0.398 6.398 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.135 4.135 9 C -0.092 4.092 10 C -0.159 4.159 11 C 0.088 3.912 12 O -0.611 6.611 13 S 2.681 3.319 14 O -0.922 6.922 15 O -0.955 6.955 16 C -0.766 4.766 17 C -0.142 4.142 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.540 12.965 20.717 25.888 hybrid contribution 0.725 -0.208 -1.286 1.491 sum -7.816 12.757 19.430 24.523 Atomic orbital electron populations 1.21686 0.78358 1.03086 1.02503 1.47452 1.07344 1.05936 1.73968 1.22530 0.98962 0.85415 1.01401 1.18007 0.86559 0.83801 0.76483 1.90850 1.69448 1.30878 1.48606 1.20066 0.93906 0.94891 1.03213 1.22166 0.95375 0.97121 0.96767 1.21341 0.93641 0.99047 0.99456 1.21306 1.01092 0.91909 0.94849 1.21520 0.91643 1.01063 1.01697 1.17991 0.90205 0.83506 0.99487 1.85741 1.78349 1.49115 1.47891 1.05878 0.78123 0.74909 0.72967 1.93604 1.60906 1.57060 1.80612 1.93579 1.82195 1.36551 1.83125 1.30911 1.22499 1.12112 1.11072 1.21493 1.04356 1.02201 0.86128 1.19072 0.88684 0.97451 0.95517 1.21250 0.95330 1.48399 0.91491 0.92326 1.25015 0.95430 0.95047 0.98847 1.69953 0.99682 1.48194 1.35618 0.86548 0.77957 0.77942 0.85336 1.20563 1.21151 1.19705 0.92201 0.90949 0.90361 0.91835 0.88854 0.90711 0.82179 0.84076 0.83659 0.83055 0.85253 0.84699 0.91387 0.91414 0.96069 0.95998 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.42 59.84 0.62 1.43 16 2 N -0.61 -6.95 3.27 -190.77 -0.62 -7.58 16 3 C 0.06 0.40 8.68 59.85 0.52 0.92 16 4 C 0.56 8.66 6.26 -12.47 -0.08 8.59 16 5 O -0.52 -10.09 14.86 -15.31 -0.23 -10.32 16 6 C -0.12 -1.54 4.98 -104.84 -0.52 -2.06 16 7 C -0.10 -0.81 7.55 -39.20 -0.30 -1.11 16 8 C -0.12 -0.77 10.02 -39.63 -0.40 -1.17 16 9 C -0.07 -0.57 10.03 -39.53 -0.40 -0.97 16 10 C -0.14 -1.50 8.45 -39.48 -0.33 -1.83 16 11 C 0.13 1.89 4.79 -38.69 -0.19 1.71 16 12 O -0.65 -11.21 8.46 -53.90 -0.46 -11.66 16 13 S 2.58 47.71 4.88 -107.50 -0.52 47.18 16 14 O -0.92 -20.19 18.09 -67.04 -1.21 -21.40 16 15 O -0.96 -18.55 15.27 -67.04 -1.02 -19.58 16 16 C -0.64 -10.72 5.45 37.16 0.20 -10.51 16 17 C -0.10 -2.15 5.16 -26.73 -0.14 -2.29 16 18 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 19 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 23 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.08 0.82 7.50 -51.93 -0.39 0.43 16 30 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 31 H 0.09 0.66 4.99 -51.93 -0.26 0.40 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.16 0.83 4.22 -52.49 -0.22 0.61 16 34 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 35 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.15 1.35 7.47 -52.49 -0.39 0.96 16 37 H 0.13 1.85 6.58 -51.92 -0.34 1.51 16 38 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -39.70 365.47 -10.14 -49.83 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.74 Total: -2.54 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.55 Total: -20.29 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.11 Total: -33.28 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -2.92 Total: -62.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 47.71 SS G_CDS: -0.52 Total: 47.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.70 -10.14 -49.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267526323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.041 kcal (2) G-P(sol) polarization free energy of solvation -39.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds