Wall clock time and date at job start Sat Apr 11 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99936 * 2 1 4 4 C 1.34772 * 120.00248 * 180.02562 * 2 1 3 5 5 O 1.21593 * 119.99858 * 5.36392 * 4 2 1 6 6 C 1.47535 * 120.00254 * 185.36791 * 4 2 1 7 7 C 1.39709 * 120.18809 * 22.35790 * 6 4 2 8 8 C 1.37787 * 119.90477 * 179.97438 * 7 6 4 9 9 C 1.38552 * 120.30260 * 359.97438 * 8 7 6 10 10 C 1.38051 * 120.38986 * 0.02562 * 9 8 7 11 11 C 1.38710 * 120.08448 * 359.74567 * 10 9 8 12 12 O 1.35652 * 120.15368 * 180.28136 * 11 10 9 13 13 S 1.52205 * 113.99771 * 270.22500 * 12 11 10 14 14 O 1.42103 * 104.27610 * 191.06968 * 13 12 11 15 15 O 1.42095 * 104.27715 * 318.92808 * 13 12 11 16 16 C 1.81398 * 104.44444 * 75.00024 * 13 12 11 17 17 C 1.53002 * 109.46934 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47315 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47056 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00082 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99664 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00279 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47381 * 89.99861 * 23 21 19 25 25 H 1.48505 * 109.46769 * 209.99894 * 23 21 19 26 26 H 1.48497 * 109.47222 * 329.99643 * 23 21 19 27 27 H 1.08997 * 109.47446 * 90.00147 * 1 2 3 28 28 H 1.09002 * 109.47200 * 329.99734 * 1 2 3 29 29 H 1.09001 * 109.47344 * 209.99904 * 1 2 3 30 30 H 1.09001 * 109.47370 * 84.04511 * 3 2 1 31 31 H 1.08996 * 109.47386 * 204.04595 * 3 2 1 32 32 H 1.09003 * 109.46985 * 324.04963 * 3 2 1 33 33 H 1.08000 * 120.05095 * 359.95444 * 7 6 4 34 34 H 1.08004 * 119.85290 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.80675 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.96141 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47566 * 299.99780 * 16 13 12 38 38 H 1.08997 * 109.47552 * 60.00111 * 16 13 12 39 39 H 1.08998 * 109.47752 * 299.99903 * 17 16 13 40 40 H 1.09007 * 109.47194 * 60.00205 * 17 16 13 41 41 H 1.09003 * 109.46884 * 299.99912 * 18 17 16 42 42 H 1.08997 * 109.47373 * 60.00137 * 18 17 16 43 43 H 0.96994 * 120.00141 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5349 -2.2178 -0.0994 6 6 3.6094 -1.1700 0.1190 7 6 4.2702 -0.0775 0.6860 8 6 5.6437 -0.0865 0.7952 9 6 6.3736 -1.1750 0.3456 10 6 5.7332 -2.2611 -0.2166 11 6 4.3508 -2.2710 -0.3302 12 8 3.7198 -3.3400 -0.8773 13 16 3.5357 -3.2451 -2.3852 14 8 2.6446 -4.3072 -2.6969 15 8 3.1681 -1.8909 -2.6089 16 6 5.1846 -3.5776 -3.0641 17 6 5.1302 -3.5108 -4.5917 18 6 6.5208 -3.7919 -5.1645 19 6 6.4672 -3.7254 -6.6691 20 1 5.5345 -3.5052 -7.1670 21 6 7.6087 -3.9468 -7.4099 22 7 8.7445 -4.2155 -6.8036 23 14 7.5425 -3.8637 -9.2749 24 1 7.8227 -2.4747 -9.7189 25 1 8.5601 -4.7813 -9.8477 26 1 6.1921 -4.2694 -9.7408 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5138 30 1 2.2868 1.6367 1.0221 31 1 3.1918 1.1142 -0.4187 32 1 1.6586 1.9994 -0.6033 33 1 3.7054 0.7732 1.0379 34 1 6.1538 0.7587 1.2333 35 1 7.4499 -1.1735 0.4348 36 1 6.3090 -3.1061 -0.5644 37 1 5.8878 -2.8323 -2.6924 38 1 5.5111 -4.5708 -2.7557 39 1 4.4272 -4.2564 -4.9633 40 1 4.8035 -2.5177 -4.9006 41 1 7.2241 -3.0465 -4.7930 42 1 6.8470 -4.7850 -4.8557 43 1 9.5476 -4.3709 -7.3248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267526323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:25 Heat of formation + Delta-G solvation = -118.608947 kcal Electronic energy + Delta-G solvation = -28421.792907 eV Core-core repulsion = 24367.055398 eV Total energy + Delta-G solvation = -4054.737509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59435 -40.69205 -39.00084 -38.44809 -37.34349 -36.78205 -36.57127 -34.25595 -32.85010 -31.51055 -29.79490 -28.93136 -27.61772 -25.84223 -24.68514 -24.22517 -22.56119 -22.00957 -20.75076 -19.54365 -18.89454 -18.70961 -18.46606 -18.13692 -17.43255 -16.91488 -16.87344 -16.55994 -16.26670 -16.18041 -15.73036 -15.40881 -14.70825 -14.56206 -14.51513 -14.26938 -14.13293 -14.12242 -13.70784 -13.63062 -13.43051 -13.40148 -13.34661 -13.23174 -13.09846 -13.05846 -12.81212 -12.77859 -12.68915 -12.20588 -12.00591 -11.82592 -11.41577 -11.13211 -11.09626 -10.57899 -10.18115 -10.06399 -9.74649 -8.23512 -6.34326 -1.21801 -0.32008 0.03241 1.00426 1.40167 1.41049 1.52445 1.60247 1.92302 2.38775 2.48389 2.52823 2.81633 3.10128 3.29172 3.44608 3.57398 3.65680 3.85090 3.93672 4.06495 4.19908 4.26423 4.27869 4.36377 4.41577 4.52281 4.65102 4.68100 4.75525 4.84539 4.87277 4.90642 4.93410 4.98731 5.16354 5.25844 5.39959 5.42622 5.59318 5.71302 5.77205 6.15067 6.17993 6.79934 6.92905 7.34787 8.87996 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.003079 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.905082 B = 9092.911394 C = 9630.517841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.046 3.954 4 C 0.543 3.457 5 O -0.585 6.585 6 C -0.145 4.145 7 C -0.088 4.088 8 C -0.095 4.095 9 C -0.067 4.067 10 C -0.149 4.149 11 C 0.076 3.924 12 O -0.659 6.659 13 S 2.595 3.405 14 O -0.974 6.974 15 O -0.973 6.973 16 C -0.624 4.624 17 C -0.103 4.103 18 C 0.034 3.966 19 C -0.555 4.555 20 H 0.058 0.942 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.195 0.805 34 H 0.192 0.808 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 16.908 21.805 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C -0.094 4.094 4 C 0.333 3.667 5 O -0.467 6.467 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.113 4.113 9 C -0.085 4.085 10 C -0.169 4.169 11 C 0.034 3.966 12 O -0.618 6.618 13 S 2.696 3.304 14 O -0.972 6.972 15 O -0.971 6.971 16 C -0.754 4.754 17 C -0.142 4.142 18 C -0.004 4.004 19 C -0.593 4.593 20 H 0.077 0.923 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.211 0.789 34 H 0.209 0.791 35 H 0.200 0.800 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.735 16.308 21.868 28.099 hybrid contribution 0.241 -1.060 -1.487 1.842 sum -6.494 15.248 20.381 26.269 Atomic orbital electron populations 1.21839 0.77829 1.04290 1.02267 1.47719 1.08152 1.06505 1.71949 1.22915 0.98630 0.83527 1.04375 1.18632 0.87827 0.84103 0.76132 1.90797 1.70794 1.33163 1.51913 1.20276 0.92996 0.96529 1.05279 1.22642 0.96547 0.96250 0.95107 1.21980 0.92774 0.99723 0.96798 1.21873 1.02979 0.90803 0.92873 1.21847 0.90200 1.02714 1.02127 1.18669 0.91826 0.83784 1.02360 1.85699 1.79087 1.50547 1.46483 1.05386 0.78060 0.73768 0.73228 1.93527 1.63076 1.58441 1.82152 1.93523 1.82737 1.37074 1.83785 1.30749 1.22333 1.14289 1.07992 1.21334 1.01674 1.02317 0.88866 1.18954 0.90764 0.96102 0.94604 1.21702 0.95606 1.48712 0.93244 0.92340 1.25891 0.95013 0.94472 1.03882 1.70054 1.00334 1.48751 1.37536 0.85492 0.78147 0.78433 0.79291 1.19432 1.20480 1.19229 0.93199 0.86441 0.92396 0.87686 0.89064 0.88936 0.78874 0.79092 0.79985 0.82054 0.82425 0.82878 0.91896 0.90968 0.96969 0.97708 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.42 127.77 1.33 2.82 16 2 N -0.61 -13.49 3.27 -875.72 -2.87 -16.35 16 3 C 0.05 0.47 8.68 127.77 1.11 1.58 16 4 C 0.54 17.30 6.26 86.70 0.54 17.84 16 5 O -0.58 -24.57 14.86 15.68 0.23 -24.33 16 6 C -0.15 -3.82 4.98 -20.01 -0.10 -3.91 16 7 C -0.09 -1.18 7.55 22.52 0.17 -1.01 16 8 C -0.09 -0.76 10.02 22.24 0.22 -0.54 16 9 C -0.07 -0.76 10.03 22.30 0.22 -0.54 16 10 C -0.15 -2.96 8.45 22.34 0.19 -2.77 16 11 C 0.08 2.22 4.79 22.84 0.11 2.33 16 12 O -0.66 -23.97 8.46 -55.97 -0.47 -24.44 16 13 S 2.60 100.85 4.88 -56.49 -0.28 100.57 16 14 O -0.97 -45.70 18.09 -118.57 -2.15 -47.84 16 15 O -0.97 -39.49 15.27 -118.57 -1.81 -41.30 16 16 C -0.62 -21.21 5.45 71.98 0.39 -20.82 16 17 C -0.10 -4.40 5.16 30.60 0.16 -4.24 16 18 C 0.03 1.76 4.97 29.85 0.15 1.91 16 19 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 23 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.12 1.07 8.07 -2.39 -0.02 1.05 16 29 H 0.06 1.31 7.50 -2.39 -0.02 1.30 16 30 H 0.11 0.24 7.18 -2.39 -0.02 0.22 16 31 H 0.09 1.00 4.99 -2.39 -0.01 0.99 16 32 H 0.09 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.19 1.09 4.22 -2.91 -0.01 1.08 16 34 H 0.19 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 36 H 0.16 2.67 7.47 -2.91 -0.02 2.65 16 37 H 0.16 4.40 6.58 -2.39 -0.02 4.38 16 38 H 0.15 4.61 8.14 -2.39 -0.02 4.59 16 39 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -93.52 365.47 1.19 -92.33 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.03 Total: 7.86 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 5.19 Total: -37.97 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -2.58 Total: -70.94 kcal Atomic # 8 Polarization: -133.73 SS G_CDS: -4.20 Total: -137.92 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 100.85 SS G_CDS: -0.28 Total: 100.57 kcal Total: -93.52 1.19 -92.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267526323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -93.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds