Wall clock time and date at job start Sat Apr 11 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35976 * 117.00351 * 2 1 4 4 C 1.38721 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.38113 * 120.00004 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.00023 * 359.97438 * 5 4 3 7 7 O 1.35986 * 119.99715 * 180.02562 * 6 5 4 8 8 C 1.42893 * 117.00374 * 359.97438 * 7 6 5 9 9 C 1.38672 * 120.00080 * 0.02562 * 6 5 4 10 10 C 1.50701 * 120.00043 * 180.02562 * 9 6 5 11 11 H 1.09002 * 109.47060 * 324.99711 * 10 9 6 12 12 O 1.42903 * 109.46878 * 204.99581 * 10 9 6 13 13 C 1.53002 * 109.47419 * 84.99792 * 10 9 6 14 14 N 1.46494 * 109.47345 * 185.00232 * 13 10 9 15 15 C 1.34772 * 120.00365 * 179.97438 * 14 13 10 16 16 O 1.21284 * 119.99636 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00364 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.47327 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00256 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00136 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00125 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00115 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47101 * 89.99714 * 23 21 19 25 25 H 1.48497 * 109.47189 * 210.00188 * 23 21 19 26 26 H 1.48500 * 109.46718 * 329.99604 * 23 21 19 27 27 C 1.38158 * 120.00079 * 0.26979 * 9 6 5 28 28 H 1.09004 * 109.46929 * 60.00216 * 1 2 3 29 29 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47542 * 300.00255 * 1 2 3 31 31 H 1.08002 * 119.99932 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99465 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47383 * 179.97438 * 8 7 6 34 34 H 1.09004 * 109.46805 * 299.99964 * 8 7 6 35 35 H 1.09004 * 109.46922 * 59.99587 * 8 7 6 36 36 H 0.96700 * 114.00234 * 299.99722 * 12 10 9 37 37 H 1.09008 * 109.46873 * 305.00091 * 13 10 9 38 38 H 1.08997 * 109.47047 * 64.99780 * 13 10 9 39 39 H 0.97008 * 119.99803 * 359.97438 * 14 13 10 40 40 H 1.08995 * 109.47322 * 299.99728 * 17 15 14 41 41 H 1.08997 * 109.47214 * 60.00023 * 17 15 14 42 42 H 0.97002 * 120.00207 * 179.97438 * 22 21 19 43 43 H 1.07995 * 120.00071 * 179.70152 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9179 3.6055 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9205 4.8897 -0.0005 8 6 3.0807 6.0458 -0.0017 9 6 4.0584 2.5151 0.0000 10 6 5.5634 2.5939 0.0012 11 1 5.8826 3.4536 -0.5880 12 8 6.1033 1.3994 -0.5678 13 6 6.0651 2.7461 1.4386 14 7 7.5168 2.9425 1.4309 15 6 8.1815 3.1012 2.5925 16 8 7.5777 3.0819 3.6442 17 6 9.6749 3.3026 2.5847 18 16 10.2684 3.4828 4.2851 19 6 11.9914 3.6989 3.9866 20 1 12.3694 3.6904 2.9749 21 6 12.8630 3.8790 5.0516 22 7 14.1503 4.0400 4.8287 23 14 12.2095 3.8916 6.8016 24 1 12.2245 2.5099 7.3455 25 1 13.0663 4.7645 7.6437 26 1 10.8182 4.4106 6.8066 27 6 3.4312 1.2841 -0.0056 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2123 2.3185 -0.0014 32 1 1.3297 4.5113 -0.0019 33 1 3.6985 6.9438 -0.0011 34 1 2.4521 6.0374 -0.8922 35 1 2.4506 6.0381 0.8878 36 1 5.8595 0.5927 -0.0935 37 1 5.5843 3.6078 1.9018 38 1 5.8230 1.8470 2.0050 39 1 7.9996 2.9583 0.5897 40 1 10.1554 2.4405 2.1221 41 1 9.9174 4.2013 2.0177 42 1 14.7594 4.1662 5.5729 43 1 4.0194 0.3784 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268502914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:27 Heat of formation + Delta-G solvation = -162.138757 kcal Electronic energy + Delta-G solvation = -26516.610068 eV Core-core repulsion = 22459.984965 eV Total energy + Delta-G solvation = -4056.625103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73092 -40.67245 -39.94417 -38.83296 -36.95537 -35.38981 -34.66248 -32.82782 -31.53605 -30.84823 -28.78611 -28.11879 -27.80140 -27.76522 -24.69032 -23.07754 -22.29076 -21.74226 -19.92521 -19.54143 -18.57123 -18.10263 -18.00901 -17.66307 -17.10943 -16.90347 -16.78108 -16.50727 -16.40718 -15.89517 -15.73410 -15.60411 -15.45206 -15.01241 -14.90734 -14.56122 -14.34367 -13.89935 -13.73277 -13.64935 -13.33925 -13.27377 -13.11439 -12.98665 -12.73672 -12.65897 -12.47847 -12.26632 -11.88065 -11.86124 -11.37462 -11.34104 -11.16402 -10.98542 -10.53316 -10.19052 -10.01515 -8.98983 -8.75229 -8.50580 -6.21514 0.10274 0.39850 0.99055 1.32141 1.47245 1.55429 1.56105 2.16612 2.26126 2.31404 2.43797 2.60589 2.72828 2.87372 3.32263 3.52904 3.70625 3.75604 3.91947 4.02538 4.11732 4.16201 4.24622 4.24930 4.38737 4.41070 4.41226 4.47475 4.48252 4.62330 4.68705 4.73370 4.77346 4.79727 5.12299 5.19495 5.27098 5.33375 5.49014 5.71762 6.12519 6.28846 6.43639 6.47770 6.63896 6.94358 7.17057 8.61776 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.002080 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.780685 B =13459.075166 C =13865.728178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.092 3.908 7 O -0.332 6.332 8 C 0.019 3.981 9 C -0.123 4.123 10 C 0.165 3.835 11 H 0.121 0.879 12 O -0.556 6.556 13 C 0.103 3.897 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.111 4.111 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.388 0.612 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.417 0.583 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.002 -2.770 -15.510 36.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.183 4.183 5 C -0.187 4.187 6 C 0.046 3.954 7 O -0.246 6.246 8 C -0.076 4.076 9 C -0.125 4.125 10 C 0.106 3.894 11 H 0.138 0.862 12 O -0.364 6.364 13 C -0.021 4.021 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.262 4.262 18 S 0.052 5.948 19 C -0.676 4.676 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.132 4.132 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -33.302 -2.500 -14.153 36.271 hybrid contribution 0.584 -0.006 -0.443 0.733 sum -32.718 -2.506 -14.596 35.914 Atomic orbital electron populations 1.23326 0.76574 1.05520 1.02188 1.86064 1.23295 1.26456 1.89181 1.18968 0.92230 0.85050 1.00073 1.21367 1.01370 0.91111 1.04435 1.21308 0.92702 0.99615 1.05035 1.18829 0.91521 0.85337 0.99662 1.86072 1.36889 1.12762 1.88900 1.23320 0.96316 0.85648 1.02282 1.19483 0.95836 0.90996 1.06161 1.20581 0.87373 0.89452 0.92034 0.86166 1.86620 1.75806 1.16685 1.57314 1.21982 0.80112 1.02278 0.97748 1.45612 1.08235 1.73620 1.08498 1.19963 0.88534 0.75469 0.83901 1.90686 1.69859 1.51207 1.32486 1.23261 0.94786 1.07238 1.00886 1.84682 1.05718 1.95418 1.08989 1.22462 0.91483 1.56845 0.96855 0.91956 1.25579 0.94367 0.92950 1.03206 1.70019 1.03276 1.48077 1.34074 0.85852 0.80889 0.79890 0.79639 1.18687 1.18281 1.16092 1.20110 0.92139 0.97536 1.03390 0.91578 0.86611 0.91821 0.82662 0.82624 0.87044 0.91195 0.91832 0.76084 0.91491 0.91409 0.74528 0.86805 0.86780 0.91370 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.31 10.50 -93.28 -0.98 -6.29 16 3 C 0.08 1.37 6.69 22.49 0.15 1.52 16 4 C -0.16 -2.19 9.03 22.36 0.20 -1.99 16 5 C -0.17 -2.34 9.03 22.35 0.20 -2.13 16 6 C 0.09 1.65 6.66 22.49 0.15 1.80 16 7 O -0.33 -5.91 9.63 -93.39 -0.90 -6.81 16 8 C 0.02 0.19 9.81 113.37 1.11 1.30 16 9 C -0.12 -2.29 5.08 -19.78 -0.10 -2.39 16 10 C 0.17 3.09 2.96 29.85 0.09 3.18 16 11 H 0.12 2.29 7.69 -2.39 -0.02 2.28 16 12 O -0.56 -9.83 12.93 -148.98 -1.93 -11.75 16 13 C 0.10 2.40 5.29 86.38 0.46 2.86 16 14 N -0.71 -18.25 5.50 -463.07 -2.55 -20.80 16 15 C 0.54 19.22 7.85 87.66 0.69 19.91 16 16 O -0.56 -24.87 15.86 -3.04 -0.05 -24.92 16 17 C -0.11 -4.31 6.16 71.23 0.44 -3.87 16 18 S -0.17 -8.99 18.55 -56.49 -1.05 -10.04 16 19 C -0.53 -31.23 10.04 67.95 0.68 -30.55 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 21 C 0.04 2.63 5.50 84.86 0.47 3.10 16 22 N -0.92 -56.34 13.97 21.65 0.30 -56.03 16 23 Si 0.92 45.53 27.74 68.60 1.90 47.43 16 24 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 27 C -0.11 -1.98 9.24 22.36 0.21 -1.77 16 28 H 0.07 0.32 7.66 -2.38 -0.02 0.31 16 29 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.16 1.19 6.29 -2.91 -0.02 1.17 16 32 H 0.16 1.33 6.29 -2.91 -0.02 1.31 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.47 7.66 -2.38 -0.02 0.46 16 35 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 36 H 0.39 4.80 7.33 -74.06 -0.54 4.26 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.42 8.66 8.47 -92.70 -0.79 7.88 16 40 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 41 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 42 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.15 2.12 6.40 -2.91 -0.02 2.10 16 Total: -1.00 -79.55 377.08 0.31 -79.24 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.30 Total: 17.78 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.86 Total: -7.80 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.25 Total: -76.84 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -3.85 Total: -49.77 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -79.55 0.31 -79.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268502914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.901 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds