Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35981 * 116.99673 * 2 1 4 4 C 1.38728 * 120.00080 * 0.25621 * 3 2 1 5 5 C 1.38108 * 119.99946 * 180.25510 * 4 3 2 6 6 C 1.38723 * 119.99987 * 359.48691 * 5 4 3 7 7 O 1.35981 * 120.00001 * 180.23565 * 6 5 4 8 8 C 1.42899 * 117.00037 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00072 * 0.25570 * 6 5 4 10 10 C 1.50701 * 120.00080 * 180.02562 * 9 6 5 11 11 H 1.08993 * 109.47021 * 35.00312 * 10 9 6 12 12 O 1.42893 * 109.47072 * 155.00398 * 10 9 6 13 13 C 1.52998 * 109.47106 * 275.00023 * 10 9 6 14 14 N 1.46503 * 109.46992 * 179.97438 * 13 10 9 15 15 C 1.34783 * 119.99986 * 179.97438 * 14 13 10 16 16 O 1.21283 * 119.99620 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00131 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47166 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99756 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00439 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00040 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 89.99604 * 23 21 19 25 25 H 1.48499 * 109.46954 * 209.99783 * 23 21 19 26 26 H 1.48498 * 109.46817 * 329.99478 * 23 21 19 27 27 C 1.38157 * 119.99825 * 0.02562 * 9 6 5 28 28 H 1.09002 * 109.46512 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.99670 * 1 2 3 30 30 H 1.08994 * 109.47111 * 60.00160 * 1 2 3 31 31 H 1.07998 * 119.99677 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.00212 * 179.77140 * 5 4 3 33 33 H 1.09008 * 109.47331 * 300.00124 * 8 7 6 34 34 H 1.09001 * 109.47229 * 59.99831 * 8 7 6 35 35 H 1.08996 * 109.47459 * 180.02562 * 8 7 6 36 36 H 0.96702 * 114.00442 * 60.00072 * 12 10 9 37 37 H 1.08993 * 109.47416 * 300.00046 * 13 10 9 38 38 H 1.09001 * 109.46875 * 60.00476 * 13 10 9 39 39 H 0.96995 * 119.99789 * 0.02562 * 14 13 10 40 40 H 1.08999 * 109.47188 * 300.01139 * 17 15 14 41 41 H 1.09005 * 109.46498 * 60.00340 * 17 15 14 42 42 H 0.96998 * 119.99987 * 180.02562 * 22 21 19 43 43 H 1.08001 * 119.99588 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3751 0.0054 5 6 1.9176 3.6057 0.0000 6 6 3.3029 3.6783 0.0001 7 8 3.9202 4.8900 -0.0003 8 6 3.0802 6.0460 -0.0002 9 6 4.0583 2.5154 0.0001 10 6 5.5632 2.5943 0.0007 11 1 5.8817 3.4538 0.5905 12 8 6.1026 1.3998 0.5699 13 6 6.0665 2.7469 -1.4360 14 7 7.5295 2.8243 -1.4353 15 6 8.1976 2.9611 -2.5979 16 8 7.5877 3.0206 -3.6444 17 6 9.7025 3.0401 -2.5972 18 16 10.2979 3.2208 -4.2969 19 6 12.0347 3.2858 -4.0073 20 1 12.4172 3.2166 -2.9998 21 6 12.9115 3.4249 -5.0744 22 7 14.2090 3.4730 -4.8582 23 14 12.2500 3.5439 -6.8174 24 1 12.0026 4.9683 -7.1567 25 1 13.2430 2.9748 -7.7635 26 1 10.9786 2.7832 -6.9172 27 6 3.4311 1.2843 -0.0004 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2122 2.3184 0.0100 32 1 1.3294 4.5114 0.0005 33 1 2.4505 6.0378 -0.8900 34 1 2.4512 6.0380 0.8900 35 1 3.6979 6.9440 -0.0010 36 1 5.8594 0.5932 0.0952 37 1 5.7480 1.8875 -2.0258 38 1 5.6551 3.6582 -1.8702 39 1 8.0172 2.7763 -0.5983 40 1 10.0210 3.8997 -2.0076 41 1 10.1139 2.1290 -2.1627 42 1 14.8216 3.5705 -5.6038 43 1 4.0194 0.3786 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268502915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -133.011900 kcal Electronic energy + Delta-G solvation = -26512.503587 eV Core-core repulsion = 22457.141520 eV Total energy + Delta-G solvation = -4055.362068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09901 -39.48869 -39.22679 -37.97735 -36.31080 -34.13702 -32.40146 -32.10454 -30.59510 -29.81402 -28.02209 -27.41388 -27.26934 -25.57359 -23.81252 -22.47337 -21.52689 -20.40651 -18.90150 -17.99885 -17.93190 -17.39189 -16.90705 -16.33529 -16.27428 -15.94322 -15.78886 -15.30897 -15.17713 -14.94091 -14.89958 -14.72122 -14.19872 -13.76557 -13.57377 -13.25691 -13.21140 -13.05511 -12.82038 -12.75286 -12.65109 -12.18972 -12.03679 -11.80616 -11.60497 -11.28593 -11.23193 -10.97807 -10.83651 -10.65648 -10.46839 -9.82503 -9.51277 -9.33989 -8.98029 -8.90572 -8.45539 -8.13940 -6.87404 -6.25263 -3.96501 0.72865 1.02766 2.76889 2.83235 2.94117 3.04488 3.18874 3.35150 3.39156 3.53668 3.69700 4.04415 4.22031 4.25916 4.36630 4.55337 4.64074 4.66889 4.69383 4.70234 4.78529 4.81078 4.85613 4.93158 4.98602 5.04754 5.13695 5.14467 5.31931 5.37007 5.47288 5.70191 5.78321 5.82638 5.83967 5.91750 6.08451 6.09473 6.56536 6.82812 7.03233 7.26797 7.70166 7.97942 8.45967 8.56136 9.20965 10.83963 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002081 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.206381 B =13449.386118 C =13875.806232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.166 4.166 6 C 0.106 3.894 7 O -0.312 6.312 8 C 0.027 3.973 9 C -0.107 4.107 10 C 0.149 3.851 11 H 0.122 0.878 12 O -0.550 6.550 13 C 0.099 3.901 14 N -0.730 5.730 15 C 0.531 3.469 16 O -0.522 6.522 17 C -0.123 4.123 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C -0.102 4.102 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.377 0.623 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.404 0.596 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.270 0.730 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.801 -1.575 15.012 34.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.050 3.950 4 C -0.185 4.185 5 C -0.185 4.185 6 C 0.060 3.940 7 O -0.226 6.226 8 C -0.068 4.068 9 C -0.109 4.109 10 C 0.089 3.911 11 H 0.140 0.860 12 O -0.356 6.356 13 C -0.026 4.026 14 N -0.385 5.385 15 C 0.317 3.683 16 O -0.397 6.397 17 C -0.274 4.274 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.120 4.120 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.226 0.774 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.239 0.761 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -31.098 -1.181 13.609 33.966 hybrid contribution -0.015 -0.030 0.440 0.442 sum -31.113 -1.211 14.049 34.159 Atomic orbital electron populations 1.23053 0.78406 1.04067 1.01214 1.86094 1.21295 1.26463 1.89166 1.18779 0.92026 0.84358 0.99814 1.21053 1.00097 0.91655 1.05711 1.21017 0.93092 0.98542 1.05861 1.18613 0.90728 0.85274 0.99338 1.86105 1.35524 1.12100 1.88822 1.23084 0.95993 0.86501 1.01178 1.19488 0.96189 0.90430 1.04783 1.20841 0.86976 0.89299 0.93955 0.86011 1.86640 1.75753 1.16240 1.56983 1.21890 0.81406 1.03326 0.95987 1.45823 1.06337 1.76689 1.09645 1.20282 0.89530 0.75313 0.83216 1.90696 1.69641 1.48178 1.31199 1.23270 0.93313 1.05852 1.04920 1.84767 1.06625 1.96464 1.03829 1.22328 0.88376 1.57942 0.98127 0.89355 1.24721 0.94123 0.93290 0.99252 1.69941 1.01470 1.47830 1.32499 0.86727 0.80910 0.80131 0.84034 1.19250 1.19992 1.15918 1.19931 0.91521 0.97346 1.03244 0.88134 0.92758 0.92676 0.85078 0.84882 0.92580 0.92733 0.87911 0.77410 0.91263 0.90303 0.76120 0.88464 0.88373 0.91986 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.71 10.50 -19.68 -0.21 -2.92 16 3 C 0.10 0.86 6.69 -39.24 -0.26 0.59 16 4 C -0.17 -1.28 9.03 -39.45 -0.36 -1.63 16 5 C -0.17 -1.31 9.03 -39.45 -0.36 -1.67 16 6 C 0.11 1.00 6.66 -39.24 -0.26 0.74 16 7 O -0.31 -2.92 9.63 -19.68 -0.19 -3.10 16 8 C 0.03 0.16 9.81 101.05 0.99 1.15 16 9 C -0.11 -1.04 5.08 -104.49 -0.53 -1.57 16 10 C 0.15 1.46 3.01 -27.88 -0.08 1.38 16 11 H 0.12 1.23 7.69 -51.93 -0.40 0.83 16 12 O -0.55 -5.21 12.73 -35.23 -0.45 -5.66 16 13 C 0.10 1.19 5.32 -4.04 -0.02 1.17 16 14 N -0.73 -9.94 5.45 -60.29 -0.33 -10.27 16 15 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 16 O -0.52 -11.62 15.86 5.55 0.09 -11.53 16 17 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 18 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 19 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 20 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 23 Si 0.86 22.06 27.74 -169.99 -4.72 17.35 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 27 C -0.10 -0.93 9.24 -39.45 -0.36 -1.30 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.05 0.21 7.67 -51.93 -0.40 -0.18 16 31 H 0.13 0.69 6.29 -52.49 -0.33 0.36 16 32 H 0.13 0.74 6.29 -52.49 -0.33 0.41 16 33 H 0.06 0.28 7.66 -51.92 -0.40 -0.12 16 34 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 2.59 7.32 45.56 0.33 2.92 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.40 4.62 8.35 -40.82 -0.34 4.27 16 40 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 41 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 42 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.14 1.05 6.40 -52.49 -0.34 0.72 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -36.85 376.78 -6.35 -43.21 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.11 Total: 3.74 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 0.10 Total: -4.72 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.45 Total: -36.35 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.76 Total: -23.22 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.85 -6.35 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268502915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.805 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds