Wall clock time and date at job start Sat Apr 11 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35981 * 116.99673 * 2 1 4 4 C 1.38728 * 120.00080 * 0.25621 * 3 2 1 5 5 C 1.38108 * 119.99946 * 180.25510 * 4 3 2 6 6 C 1.38723 * 119.99987 * 359.48691 * 5 4 3 7 7 O 1.35981 * 120.00001 * 180.23565 * 6 5 4 8 8 C 1.42899 * 117.00037 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00072 * 0.25570 * 6 5 4 10 10 C 1.50701 * 120.00080 * 180.02562 * 9 6 5 11 11 H 1.08993 * 109.47021 * 35.00312 * 10 9 6 12 12 O 1.42893 * 109.47072 * 155.00398 * 10 9 6 13 13 C 1.52998 * 109.47106 * 275.00023 * 10 9 6 14 14 N 1.46503 * 109.46992 * 179.97438 * 13 10 9 15 15 C 1.34783 * 119.99986 * 179.97438 * 14 13 10 16 16 O 1.21283 * 119.99620 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00131 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47166 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99756 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00439 * 0.02562 * 19 18 17 21 21 C 1.38806 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00040 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 89.99604 * 23 21 19 25 25 H 1.48499 * 109.46954 * 209.99783 * 23 21 19 26 26 H 1.48498 * 109.46817 * 329.99478 * 23 21 19 27 27 C 1.38157 * 119.99825 * 0.02562 * 9 6 5 28 28 H 1.09002 * 109.46512 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.99670 * 1 2 3 30 30 H 1.08994 * 109.47111 * 60.00160 * 1 2 3 31 31 H 1.07998 * 119.99677 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.00212 * 179.77140 * 5 4 3 33 33 H 1.09008 * 109.47331 * 300.00124 * 8 7 6 34 34 H 1.09001 * 109.47229 * 59.99831 * 8 7 6 35 35 H 1.08996 * 109.47459 * 180.02562 * 8 7 6 36 36 H 0.96702 * 114.00442 * 60.00072 * 12 10 9 37 37 H 1.08993 * 109.47416 * 300.00046 * 13 10 9 38 38 H 1.09001 * 109.46875 * 60.00476 * 13 10 9 39 39 H 0.96995 * 119.99789 * 0.02562 * 14 13 10 40 40 H 1.08999 * 109.47188 * 300.01139 * 17 15 14 41 41 H 1.09005 * 109.46498 * 60.00340 * 17 15 14 42 42 H 0.96998 * 119.99987 * 180.02562 * 22 21 19 43 43 H 1.08001 * 119.99588 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3751 0.0054 5 6 1.9176 3.6057 0.0000 6 6 3.3029 3.6783 0.0001 7 8 3.9202 4.8900 -0.0003 8 6 3.0802 6.0460 -0.0002 9 6 4.0583 2.5154 0.0001 10 6 5.5632 2.5943 0.0007 11 1 5.8817 3.4538 0.5905 12 8 6.1026 1.3998 0.5699 13 6 6.0665 2.7469 -1.4360 14 7 7.5295 2.8243 -1.4353 15 6 8.1976 2.9611 -2.5979 16 8 7.5877 3.0206 -3.6444 17 6 9.7025 3.0401 -2.5972 18 16 10.2979 3.2208 -4.2969 19 6 12.0347 3.2858 -4.0073 20 1 12.4172 3.2166 -2.9998 21 6 12.9115 3.4249 -5.0744 22 7 14.2090 3.4730 -4.8582 23 14 12.2500 3.5439 -6.8174 24 1 12.0026 4.9683 -7.1567 25 1 13.2430 2.9748 -7.7635 26 1 10.9786 2.7832 -6.9172 27 6 3.4311 1.2843 -0.0004 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2122 2.3184 0.0100 32 1 1.3294 4.5114 0.0005 33 1 2.4505 6.0378 -0.8900 34 1 2.4512 6.0380 0.8900 35 1 3.6979 6.9440 -0.0010 36 1 5.8594 0.5932 0.0952 37 1 5.7480 1.8875 -2.0258 38 1 5.6551 3.6582 -1.8702 39 1 8.0172 2.7763 -0.5983 40 1 10.0210 3.8997 -2.0076 41 1 10.1139 2.1290 -2.1627 42 1 14.8216 3.5705 -5.6038 43 1 4.0194 0.3786 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268502915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:29 Heat of formation + Delta-G solvation = -162.069375 kcal Electronic energy + Delta-G solvation = -26513.763614 eV Core-core repulsion = 22457.141520 eV Total energy + Delta-G solvation = -4056.622094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73047 -40.67320 -39.94374 -38.83463 -36.95773 -35.36726 -34.66157 -32.83558 -31.53399 -30.84974 -28.79131 -28.11930 -27.80143 -27.76522 -24.68240 -23.07643 -22.27850 -21.74224 -19.92548 -19.54210 -18.57096 -18.10101 -18.01037 -17.66882 -17.10705 -16.89812 -16.77740 -16.50468 -16.40482 -15.90245 -15.73298 -15.61055 -15.45362 -15.01344 -14.90687 -14.54946 -14.35949 -13.89121 -13.73188 -13.64769 -13.34387 -13.26552 -13.11796 -12.98828 -12.72995 -12.65789 -12.48040 -12.25904 -11.88040 -11.86161 -11.37558 -11.33504 -11.16295 -10.99145 -10.53295 -10.18896 -10.01495 -8.98928 -8.75215 -8.50560 -6.21442 0.10252 0.39841 0.99159 1.32071 1.47359 1.55517 1.56153 2.16426 2.26184 2.31511 2.43822 2.60722 2.72900 2.87380 3.32285 3.53136 3.70834 3.75978 3.92086 4.02064 4.12694 4.16009 4.24698 4.24899 4.38727 4.41084 4.41318 4.47445 4.48343 4.62893 4.68727 4.73323 4.77410 4.79854 5.12640 5.19417 5.27064 5.33251 5.49021 5.71831 6.12642 6.28841 6.44077 6.47741 6.63528 6.94362 7.17317 8.61806 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002081 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.206381 B =13449.386118 C =13875.806232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.092 3.908 7 O -0.332 6.332 8 C 0.019 3.981 9 C -0.123 4.123 10 C 0.166 3.834 11 H 0.121 0.879 12 O -0.556 6.556 13 C 0.103 3.897 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.111 4.111 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.916 5.916 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.113 4.113 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.388 0.612 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.418 0.582 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.134 -1.548 15.566 36.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.047 3.953 7 O -0.246 6.246 8 C -0.076 4.076 9 C -0.125 4.125 10 C 0.106 3.894 11 H 0.138 0.862 12 O -0.364 6.364 13 C -0.022 4.022 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.262 4.262 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.132 4.132 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -33.443 -1.166 14.217 36.358 hybrid contribution 0.587 -0.057 0.442 0.737 sum -32.856 -1.224 14.659 35.998 Atomic orbital electron populations 1.23326 0.76573 1.05516 1.02190 1.86067 1.23300 1.26460 1.89185 1.18971 0.92230 0.85055 1.00081 1.21367 1.01369 0.91109 1.04429 1.21309 0.92702 0.99610 1.05027 1.18829 0.91517 0.85336 0.99650 1.86071 1.36891 1.12762 1.88901 1.23322 0.96318 0.85646 1.02287 1.19483 0.95848 0.90990 1.06154 1.20580 0.87372 0.89443 0.92025 0.86188 1.86615 1.75841 1.16692 1.57229 1.21973 0.79788 1.02655 0.97762 1.45600 1.07196 1.74398 1.08760 1.19966 0.88745 0.75324 0.83837 1.90686 1.70069 1.50623 1.32859 1.23262 0.94602 1.07428 1.00879 1.84681 1.04263 1.96668 1.09187 1.22464 0.90487 1.57581 0.97118 0.91957 1.25585 0.94399 0.92984 1.03149 1.70018 1.02627 1.48773 1.34026 0.85850 0.80461 0.80357 0.79589 1.18668 1.18299 1.16090 1.20107 0.92144 0.97537 1.03399 0.86622 0.91565 0.91820 0.82660 0.82607 0.91817 0.91206 0.87023 0.76095 0.91507 0.91414 0.74489 0.86830 0.86757 0.91370 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.34 10.50 -93.34 -0.98 -6.32 16 3 C 0.08 1.37 6.69 22.49 0.15 1.52 16 4 C -0.16 -2.19 9.03 22.36 0.20 -1.99 16 5 C -0.17 -2.32 9.03 22.35 0.20 -2.12 16 6 C 0.09 1.65 6.66 22.49 0.15 1.80 16 7 O -0.33 -5.87 9.63 -93.34 -0.90 -6.77 16 8 C 0.02 0.18 9.81 113.37 1.11 1.30 16 9 C -0.12 -2.29 5.08 -19.78 -0.10 -2.39 16 10 C 0.17 3.09 3.01 29.85 0.09 3.18 16 11 H 0.12 2.29 7.69 -2.39 -0.02 2.27 16 12 O -0.56 -9.78 12.73 -148.98 -1.90 -11.67 16 13 C 0.10 2.39 5.32 86.38 0.46 2.85 16 14 N -0.71 -18.23 5.45 -463.06 -2.52 -20.75 16 15 C 0.54 19.21 7.85 87.65 0.69 19.90 16 16 O -0.56 -24.87 15.86 -3.04 -0.05 -24.92 16 17 C -0.11 -4.31 6.16 71.23 0.44 -3.87 16 18 S -0.17 -8.99 18.55 -56.49 -1.05 -10.03 16 19 C -0.53 -31.24 10.04 67.96 0.68 -30.56 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 21 C 0.04 2.63 5.50 84.86 0.47 3.09 16 22 N -0.92 -56.35 13.97 21.65 0.30 -56.05 16 23 Si 0.92 45.53 27.74 68.60 1.90 47.44 16 24 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 27 C -0.11 -1.99 9.24 22.35 0.21 -1.78 16 28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 30 H 0.06 0.36 7.67 -2.39 -0.02 0.34 16 31 H 0.16 1.19 6.29 -2.91 -0.02 1.17 16 32 H 0.16 1.31 6.29 -2.91 -0.02 1.29 16 33 H 0.06 0.52 7.66 -2.38 -0.02 0.50 16 34 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.39 4.83 7.32 -74.06 -0.54 4.29 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.42 8.70 8.35 -92.71 -0.77 7.93 16 40 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 41 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 42 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.15 2.13 6.40 -2.91 -0.02 2.11 16 Total: -1.00 -79.45 376.78 0.38 -79.07 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.29 Total: 17.83 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 5.86 Total: -7.83 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.22 Total: -76.80 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -3.82 Total: -49.68 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.03 kcal Total: -79.45 0.38 -79.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268502915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.003 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds