Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99777 * 2 1 4 4 C 1.38634 * 120.02319 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.88432 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02162 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00077 * 0.02562 * 6 5 4 8 8 C 1.38767 * 119.94932 * 359.97438 * 5 4 3 9 9 C 1.38176 * 120.05321 * 0.03128 * 8 5 4 10 10 C 1.50699 * 119.94421 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.47247 * 339.99728 * 10 9 8 12 12 O 1.42905 * 109.46972 * 219.99664 * 10 9 8 13 13 C 1.53005 * 109.47155 * 100.00116 * 10 9 8 14 14 N 1.46501 * 109.46915 * 185.00324 * 13 10 9 15 15 C 1.34777 * 119.99904 * 179.97438 * 14 13 10 16 16 O 1.21281 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00142 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47076 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99786 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99795 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46681 * 120.00322 * 23 21 19 26 26 H 1.48502 * 109.46911 * 240.00274 * 23 21 19 27 27 C 1.38178 * 120.10847 * 0.22934 * 9 8 5 28 28 H 1.09001 * 109.47605 * 299.99538 * 1 2 3 29 29 H 1.09003 * 109.47322 * 60.00151 * 1 2 3 30 30 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.06088 * 0.03610 * 4 3 2 32 32 H 1.09006 * 109.46650 * 180.02562 * 7 6 5 33 33 H 1.08991 * 109.47348 * 300.00842 * 7 6 5 34 34 H 1.09006 * 109.46501 * 60.00972 * 7 6 5 35 35 H 1.07993 * 119.97330 * 180.02562 * 8 5 4 36 36 H 0.96691 * 114.00079 * 299.99840 * 12 10 9 37 37 H 1.09000 * 109.46735 * 304.99446 * 13 10 9 38 38 H 1.08998 * 109.47316 * 64.99479 * 13 10 9 39 39 H 0.96997 * 120.00111 * 359.97438 * 14 13 10 40 40 H 1.09001 * 109.47436 * 299.99549 * 17 15 14 41 41 H 1.08998 * 109.47372 * 59.99747 * 17 15 14 42 42 H 0.97004 * 119.99717 * 180.02562 * 22 21 19 43 43 H 1.08004 * 119.96801 * 179.72777 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0005 9 6 4.0595 2.5152 -0.0012 10 6 5.5645 2.5920 -0.0024 11 1 5.8779 3.5750 -0.3541 12 8 6.0921 1.5855 -0.8688 13 6 6.0877 2.3677 1.4178 14 7 7.5399 2.5603 1.4393 15 6 8.2221 2.4137 2.5924 16 8 7.6338 2.1228 3.6122 17 6 9.7159 2.6112 2.6144 18 16 10.3346 2.3475 4.2948 19 6 12.0540 2.6329 4.0360 20 1 12.4173 2.8850 3.0507 21 6 12.9416 2.5336 5.0985 22 7 12.4989 2.2259 6.2993 23 14 14.7644 2.8368 4.8243 24 1 15.0022 3.1645 3.3956 25 1 15.2106 3.9709 5.6728 26 1 15.5291 1.6165 5.1867 27 6 3.4316 1.2843 -0.0061 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3189 0.0015 32 1 -0.7010 5.5895 0.0005 33 1 -0.5448 4.0554 -0.8882 34 1 -0.5434 4.0565 0.8918 35 1 3.8026 4.6366 -0.0005 36 1 5.8527 0.6836 -0.6156 37 1 5.6168 3.0801 2.0952 38 1 5.8510 1.3525 1.7362 39 1 8.0103 2.7934 0.6237 40 1 10.1867 1.8983 1.9375 41 1 9.9529 3.6262 2.2954 42 1 13.1192 2.1569 7.0420 43 1 4.0200 0.3786 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268574147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -135.807490 kcal Electronic energy + Delta-G solvation = -26081.552261 eV Core-core repulsion = 22026.068967 eV Total energy + Delta-G solvation = -4055.483293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08670 -39.42443 -39.25623 -38.30069 -36.25110 -34.11894 -32.40173 -31.60431 -30.74080 -29.80584 -28.59759 -27.34609 -27.06326 -25.45446 -23.65824 -22.84498 -21.37136 -20.34872 -19.08182 -17.91605 -17.49373 -16.99838 -16.70406 -16.48486 -16.41046 -16.24999 -15.94550 -15.55800 -15.31846 -15.16331 -14.77882 -14.58255 -14.29692 -13.88377 -13.59052 -13.25117 -13.01846 -12.88857 -12.78527 -12.63237 -12.53474 -12.07205 -11.91413 -11.76582 -11.69196 -11.59798 -11.04775 -10.99075 -10.88381 -10.75586 -10.54750 -9.77720 -9.39868 -9.05399 -9.04445 -8.88244 -8.41712 -8.19985 -6.46961 -6.19243 -3.89371 0.79534 1.06161 2.71869 2.79083 3.03462 3.13106 3.23800 3.24067 3.31230 3.36572 3.72330 4.11099 4.22988 4.23527 4.39851 4.52385 4.54261 4.62734 4.64260 4.65454 4.73232 4.77080 4.80032 4.97100 4.99067 5.00216 5.16012 5.21153 5.27724 5.57337 5.63296 5.78176 5.79239 5.82271 5.93852 6.08180 6.12776 6.18879 6.60214 6.69239 7.02480 7.24788 7.62796 7.74520 8.38319 8.64352 9.26296 10.88248 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022919 B = 0.001802 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.426626 B =15533.021847 C =15808.706332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.170 3.830 4 C -0.296 4.296 5 C 0.168 3.832 6 O -0.312 6.312 7 C 0.026 3.974 8 C -0.174 4.174 9 C -0.036 4.036 10 C 0.141 3.859 11 H 0.120 0.880 12 O -0.548 6.548 13 C 0.095 3.905 14 N -0.734 5.734 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.176 4.176 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.137 0.863 36 H 0.379 0.621 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.402 0.598 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.267 0.733 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.770 0.588 -17.939 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.124 3.876 4 C -0.315 4.315 5 C 0.122 3.878 6 O -0.225 6.225 7 C -0.069 4.069 8 C -0.193 4.193 9 C -0.038 4.038 10 C 0.081 3.919 11 H 0.138 0.862 12 O -0.354 6.354 13 C -0.030 4.030 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.303 4.303 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.195 4.195 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.228 0.772 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.338 0.586 -16.340 32.717 hybrid contribution 1.103 0.150 -1.370 1.765 sum -27.235 0.736 -17.710 32.495 Atomic orbital electron populations 1.23090 0.78222 1.04254 1.01289 1.86111 1.21541 1.26600 1.88236 1.18614 0.91852 0.83665 0.93490 1.21272 1.00552 0.92029 1.17684 1.18659 0.91073 0.84501 0.93536 1.86110 1.19258 1.28890 1.88246 1.23091 0.78346 1.04124 1.01301 1.20139 0.90375 0.99095 1.09641 1.19897 0.95862 0.92038 0.95970 1.21055 0.87089 0.93906 0.89856 0.86195 1.86635 1.76416 1.18412 1.53964 1.21929 0.81992 1.03011 0.96022 1.45883 1.07122 1.74039 1.11861 1.20323 0.89292 0.75899 0.82683 1.90706 1.70307 1.45648 1.32632 1.23523 0.93575 1.04959 1.08261 1.85394 1.05366 1.91687 1.01055 1.22919 0.92225 1.55017 0.98071 0.90835 1.25003 0.99555 0.94659 0.94452 1.70033 1.35290 1.45128 0.99875 0.86110 0.82912 0.78025 0.78409 1.19597 1.20597 1.20586 1.20006 0.91373 0.98124 1.10025 0.92572 0.92679 0.87902 0.84753 0.87915 0.92674 0.92569 0.84540 0.77215 0.90341 0.90934 0.76299 0.89114 0.89164 0.92268 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.76 10.50 -19.45 -0.20 -2.97 16 3 C 0.17 1.60 6.68 -39.24 -0.26 1.34 16 4 C -0.30 -2.52 8.02 -39.29 -0.32 -2.83 16 5 C 0.17 1.60 6.68 -39.24 -0.26 1.33 16 6 O -0.31 -2.76 10.50 -19.43 -0.20 -2.96 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.17 -1.66 9.60 -39.41 -0.38 -2.04 16 9 C -0.04 -0.34 4.97 -104.67 -0.52 -0.86 16 10 C 0.14 1.26 3.24 -27.88 -0.09 1.17 16 11 H 0.12 0.97 8.00 -51.93 -0.42 0.55 16 12 O -0.55 -5.03 13.13 -35.23 -0.46 -5.50 16 13 C 0.10 1.11 5.29 -4.04 -0.02 1.08 16 14 N -0.73 -9.91 5.50 -60.29 -0.33 -10.24 16 15 C 0.53 10.05 7.85 -10.99 -0.09 9.97 16 16 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 23 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.18 -1.66 9.26 -39.41 -0.36 -2.02 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.13 0.81 4.54 -52.49 -0.24 0.58 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.20 7.66 -51.93 -0.40 -0.19 16 34 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 35 H 0.14 1.15 8.03 -52.49 -0.42 0.73 16 36 H 0.38 2.57 7.49 45.56 0.34 2.92 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.40 4.46 8.47 -40.82 -0.35 4.11 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.13 1.06 6.77 -52.48 -0.36 0.71 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -37.36 381.43 -6.87 -44.23 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.11 Total: 3.11 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 0.10 Total: -6.59 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.40 Total: -35.89 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.78 Total: -23.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.36 -6.87 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268574147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.574 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds