Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38635 * 120.02776 * 0.02562 * 3 2 1 5 5 C 1.38636 * 119.89179 * 180.02562 * 4 3 2 6 6 O 1.35900 * 120.02815 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99934 * 0.02562 * 6 5 4 8 8 C 1.38772 * 119.94385 * 0.02562 * 5 4 3 9 9 C 1.38182 * 120.05496 * 359.97438 * 8 5 4 10 10 C 1.50696 * 119.94566 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47210 * 204.97790 * 10 9 8 12 12 O 1.42903 * 109.46774 * 324.97681 * 10 9 8 13 13 C 1.53002 * 109.47154 * 84.97339 * 10 9 8 14 14 N 1.46501 * 109.46972 * 179.97438 * 13 10 9 15 15 C 1.34776 * 119.99983 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00166 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47083 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99837 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00068 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00165 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00476 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99714 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46745 * 89.99719 * 23 21 19 25 25 H 1.48494 * 109.46998 * 209.99881 * 23 21 19 26 26 H 1.48497 * 109.47274 * 330.00350 * 23 21 19 27 27 C 1.38171 * 120.10615 * 0.02562 * 9 8 5 28 28 H 1.09006 * 109.47188 * 299.99025 * 1 2 3 29 29 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 30 30 H 1.09003 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.08009 * 120.05593 * 359.74934 * 4 3 2 32 32 H 1.08997 * 109.46951 * 299.99975 * 7 6 5 33 33 H 1.08997 * 109.47042 * 59.99597 * 7 6 5 34 34 H 1.08997 * 109.47126 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.97581 * 179.97438 * 8 5 4 36 36 H 0.96702 * 114.00514 * 60.00469 * 12 10 9 37 37 H 1.08997 * 109.46983 * 300.00127 * 13 10 9 38 38 H 1.09002 * 109.46651 * 60.00141 * 13 10 9 39 39 H 0.96996 * 120.00263 * 0.02562 * 14 13 10 40 40 H 1.09001 * 109.47210 * 299.99946 * 17 15 14 41 41 H 1.09002 * 109.47226 * 59.99988 * 17 15 14 42 42 H 0.96997 * 120.00368 * 180.02562 * 22 21 19 43 43 H 1.08002 * 119.97247 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0016 9 6 4.0595 2.5151 -0.0021 10 6 5.5645 2.5919 -0.0033 11 1 5.9745 1.6801 -0.4375 12 8 5.9834 3.7181 -0.7769 13 6 6.0686 2.7442 1.4333 14 7 7.5317 2.8182 1.4321 15 6 8.2005 2.9541 2.5943 16 8 7.5909 3.0156 3.6411 17 6 9.7055 3.0309 2.5932 18 16 10.3017 3.2108 4.2927 19 6 12.0385 3.2732 4.0026 20 1 12.4205 3.2041 2.9947 21 6 12.9159 3.4111 5.0693 22 7 14.2133 3.4582 4.8525 23 14 12.2552 3.5299 6.8126 24 1 12.1510 2.1683 7.3961 25 1 13.1772 4.3524 7.6363 26 1 10.9122 4.1631 6.7909 27 6 3.4317 1.2843 -0.0016 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3189 -0.0031 32 1 -0.5448 4.0556 -0.8883 33 1 -0.5435 4.0564 0.8916 34 1 -0.7010 5.5895 0.0015 35 1 3.8027 4.6366 -0.0025 36 1 5.6547 4.5658 -0.4475 37 1 5.6585 3.6560 1.8674 38 1 5.7490 1.8852 2.0233 39 1 8.0192 2.7694 0.5950 40 1 10.1154 2.1192 2.1585 41 1 10.0250 3.8901 2.0035 42 1 14.8264 3.5542 5.5980 43 1 4.0199 0.3785 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268574148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -135.316082 kcal Electronic energy + Delta-G solvation = -26143.583803 eV Core-core repulsion = 22088.121819 eV Total energy + Delta-G solvation = -4055.461984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12020 -39.52246 -39.28598 -38.37721 -36.29215 -34.19777 -32.41331 -31.66583 -30.76261 -29.92803 -28.64126 -27.43572 -27.08243 -25.58463 -23.70761 -22.88257 -21.40726 -20.45610 -19.12794 -17.96649 -17.52598 -17.03163 -16.74176 -16.51461 -16.43646 -16.37513 -15.97314 -15.63057 -15.40600 -15.19559 -14.92069 -14.67655 -14.36350 -13.76844 -13.62226 -13.33452 -13.11618 -12.91158 -12.84278 -12.76563 -12.68553 -12.10014 -11.95298 -11.82640 -11.79340 -11.63261 -11.24430 -10.98720 -10.91675 -10.70280 -10.50264 -9.83545 -9.52624 -9.07559 -9.01137 -8.95450 -8.47237 -8.44796 -6.89028 -6.26318 -3.97868 0.76333 1.03036 2.67234 2.76144 2.80250 2.99898 3.17283 3.34191 3.37405 3.52757 3.66785 4.05937 4.18933 4.35574 4.36922 4.49237 4.50494 4.59304 4.61128 4.62819 4.69544 4.73058 4.75811 4.80894 4.94605 4.96141 4.97371 5.12649 5.22517 5.32190 5.55950 5.68352 5.75826 5.76923 5.81147 6.04728 6.06088 6.09103 6.50293 6.66258 6.99502 7.20433 7.64234 7.96772 8.44692 8.51300 9.19855 10.82873 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.001884 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.395945 B =14858.370662 C =15023.669763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.168 3.832 4 C -0.296 4.296 5 C 0.170 3.830 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.177 4.177 9 C -0.037 4.037 10 C 0.141 3.859 11 H 0.121 0.879 12 O -0.548 6.548 13 C 0.095 3.905 14 N -0.731 5.731 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.123 4.123 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.379 0.621 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.405 0.595 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.270 0.730 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.991 -2.602 -15.022 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.315 4.315 5 C 0.124 3.876 6 O -0.225 6.225 7 C -0.069 4.069 8 C -0.195 4.195 9 C -0.038 4.038 10 C 0.081 3.919 11 H 0.139 0.861 12 O -0.354 6.354 13 C -0.030 4.030 14 N -0.387 5.387 15 C 0.317 3.683 16 O -0.396 6.396 17 C -0.274 4.274 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.107 0.893 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.193 4.193 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.239 0.761 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.398 -2.929 -13.540 35.236 hybrid contribution -0.009 0.289 -0.487 0.566 sum -32.407 -2.640 -14.027 35.411 Atomic orbital electron populations 1.23092 0.78219 1.04254 1.01302 1.86112 1.21537 1.26604 1.88229 1.18656 0.91929 0.83653 0.93496 1.21274 1.00564 0.92025 1.17681 1.18615 0.90997 0.84525 0.93481 1.86110 1.19284 1.28870 1.88230 1.23090 0.78314 1.04149 1.01299 1.19995 0.90461 0.99020 1.10063 1.19892 0.95822 0.92066 0.96018 1.21050 0.88252 0.91434 0.91176 0.86102 1.86639 1.76279 1.16958 1.55516 1.21932 0.81560 1.03570 0.95923 1.45829 1.06214 1.76927 1.09688 1.20296 0.89568 0.75280 0.83183 1.90704 1.69667 1.48010 1.31170 1.23272 0.93224 1.05874 1.05013 1.84780 1.06673 1.96304 1.03902 1.22323 0.88315 1.58055 0.98136 0.89348 1.24718 0.94121 0.93265 0.99256 1.69936 1.01446 1.47795 1.32522 0.86730 0.81219 0.79701 0.84168 1.19231 1.19978 1.15929 1.20129 0.91325 0.98168 1.09707 0.92580 0.92655 0.87903 0.84749 0.92656 0.92582 0.87895 0.84888 0.77178 0.90916 0.90262 0.76051 0.88432 0.88347 0.91967 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.68 10.50 -19.42 -0.20 -2.88 16 3 C 0.17 1.55 6.68 -39.24 -0.26 1.29 16 4 C -0.30 -2.43 8.02 -39.29 -0.32 -2.75 16 5 C 0.17 1.55 6.68 -39.24 -0.26 1.29 16 6 O -0.31 -2.67 10.50 -19.43 -0.20 -2.87 16 7 C 0.03 0.12 9.81 101.05 0.99 1.11 16 8 C -0.18 -1.60 9.26 -39.40 -0.37 -1.96 16 9 C -0.04 -0.33 5.00 -104.67 -0.52 -0.85 16 10 C 0.14 1.19 3.30 -27.88 -0.09 1.10 16 11 H 0.12 0.92 8.05 -51.93 -0.42 0.50 16 12 O -0.55 -4.78 12.88 -35.23 -0.45 -5.23 16 13 C 0.09 1.04 5.32 -4.04 -0.02 1.01 16 14 N -0.73 -9.31 5.45 -60.29 -0.33 -9.64 16 15 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 16 O -0.52 -11.32 15.86 5.56 0.09 -11.23 16 17 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 23 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 27 C -0.17 -1.61 9.61 -39.41 -0.38 -1.98 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.05 0.19 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.13 0.78 4.54 -52.48 -0.24 0.54 16 32 H 0.05 0.19 7.66 -51.93 -0.40 -0.20 16 33 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 34 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.13 1.01 6.60 -52.49 -0.35 0.67 16 36 H 0.38 2.43 7.39 45.56 0.34 2.76 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.24 8.35 -40.82 -0.34 3.90 16 40 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 41 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -36.87 378.26 -6.36 -43.23 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.13 Total: 2.81 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.11 Total: -5.53 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.45 Total: -35.59 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.77 Total: -22.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.87 -6.36 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268574148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.085 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds