Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38635 * 120.02776 * 0.02562 * 3 2 1 5 5 C 1.38636 * 119.89179 * 180.02562 * 4 3 2 6 6 O 1.35900 * 120.02815 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99934 * 0.02562 * 6 5 4 8 8 C 1.38772 * 119.94385 * 0.02562 * 5 4 3 9 9 C 1.38182 * 120.05496 * 359.97438 * 8 5 4 10 10 C 1.50696 * 119.94566 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47210 * 204.97790 * 10 9 8 12 12 O 1.42903 * 109.46774 * 324.97681 * 10 9 8 13 13 C 1.53002 * 109.47154 * 84.97339 * 10 9 8 14 14 N 1.46501 * 109.46972 * 179.97438 * 13 10 9 15 15 C 1.34776 * 119.99983 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00166 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47083 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99837 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00068 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00165 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00476 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99714 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46745 * 89.99719 * 23 21 19 25 25 H 1.48494 * 109.46998 * 209.99881 * 23 21 19 26 26 H 1.48497 * 109.47274 * 330.00350 * 23 21 19 27 27 C 1.38171 * 120.10615 * 0.02562 * 9 8 5 28 28 H 1.09006 * 109.47188 * 299.99025 * 1 2 3 29 29 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 30 30 H 1.09003 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.08009 * 120.05593 * 359.74934 * 4 3 2 32 32 H 1.08997 * 109.46951 * 299.99975 * 7 6 5 33 33 H 1.08997 * 109.47042 * 59.99597 * 7 6 5 34 34 H 1.08997 * 109.47126 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.97581 * 179.97438 * 8 5 4 36 36 H 0.96702 * 114.00514 * 60.00469 * 12 10 9 37 37 H 1.08997 * 109.46983 * 300.00127 * 13 10 9 38 38 H 1.09002 * 109.46651 * 60.00141 * 13 10 9 39 39 H 0.96996 * 120.00263 * 0.02562 * 14 13 10 40 40 H 1.09001 * 109.47210 * 299.99946 * 17 15 14 41 41 H 1.09002 * 109.47226 * 59.99988 * 17 15 14 42 42 H 0.96997 * 120.00368 * 180.02562 * 22 21 19 43 43 H 1.08002 * 119.97247 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0016 9 6 4.0595 2.5151 -0.0021 10 6 5.5645 2.5919 -0.0033 11 1 5.9745 1.6801 -0.4375 12 8 5.9834 3.7181 -0.7769 13 6 6.0686 2.7442 1.4333 14 7 7.5317 2.8182 1.4321 15 6 8.2005 2.9541 2.5943 16 8 7.5909 3.0156 3.6411 17 6 9.7055 3.0309 2.5932 18 16 10.3017 3.2108 4.2927 19 6 12.0385 3.2732 4.0026 20 1 12.4205 3.2041 2.9947 21 6 12.9159 3.4111 5.0693 22 7 14.2133 3.4582 4.8525 23 14 12.2552 3.5299 6.8126 24 1 12.1510 2.1683 7.3961 25 1 13.1772 4.3524 7.6363 26 1 10.9122 4.1631 6.7909 27 6 3.4317 1.2843 -0.0016 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3189 -0.0031 32 1 -0.5448 4.0556 -0.8883 33 1 -0.5435 4.0564 0.8916 34 1 -0.7010 5.5895 0.0015 35 1 3.8027 4.6366 -0.0025 36 1 5.6547 4.5658 -0.4475 37 1 5.6585 3.6560 1.8674 38 1 5.7490 1.8852 2.0233 39 1 8.0192 2.7694 0.5950 40 1 10.1154 2.1192 2.1585 41 1 10.0250 3.8901 2.0035 42 1 14.8264 3.5542 5.5980 43 1 4.0199 0.3785 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268574148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -164.496930 kcal Electronic energy + Delta-G solvation = -26144.849179 eV Core-core repulsion = 22088.121819 eV Total energy + Delta-G solvation = -4056.727361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72742 -40.72638 -39.83170 -39.24649 -36.95805 -35.35372 -34.65822 -32.45624 -31.32997 -31.20492 -29.21282 -28.30310 -27.79650 -27.51435 -24.53130 -23.49865 -22.13967 -21.68244 -19.95012 -19.71853 -18.12751 -18.08055 -17.71854 -17.38497 -17.14449 -17.08457 -16.95252 -16.66789 -16.51336 -16.43856 -15.71870 -15.68716 -15.58022 -15.15217 -14.91410 -14.56139 -14.29360 -13.87272 -13.74521 -13.38740 -13.32826 -13.26307 -13.15048 -12.98455 -12.65827 -12.51467 -12.50283 -12.31820 -12.18087 -11.86428 -11.49943 -11.35294 -11.16006 -10.98657 -10.52393 -10.17784 -9.70274 -9.07519 -8.98270 -8.50214 -6.20966 0.12046 0.38285 1.00038 1.32397 1.47732 1.56512 1.56930 2.11799 2.25631 2.27800 2.29684 2.59003 2.73431 2.87827 3.39650 3.52053 3.72802 3.86179 3.92513 3.98625 4.04273 4.11721 4.25518 4.27050 4.28377 4.31854 4.33984 4.38924 4.49187 4.49889 4.68167 4.69739 4.70004 4.87746 5.14559 5.15479 5.33630 5.40709 5.48556 5.72122 6.13021 6.13486 6.43749 6.45595 6.63451 6.94850 7.19046 8.62098 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.001884 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.395945 B =14858.370662 C =15023.669763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.157 3.843 4 C -0.295 4.295 5 C 0.158 3.842 6 O -0.330 6.330 7 C 0.016 3.984 8 C -0.190 4.190 9 C -0.040 4.040 10 C 0.156 3.844 11 H 0.134 0.866 12 O -0.554 6.554 13 C 0.096 3.904 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.111 4.111 18 S -0.176 6.176 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.189 4.189 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.389 0.611 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.419 0.581 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.134 -2.717 -15.677 37.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.111 3.889 4 C -0.314 4.314 5 C 0.112 3.888 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.209 4.209 9 C -0.041 4.041 10 C 0.097 3.903 11 H 0.151 0.849 12 O -0.362 6.362 13 C -0.028 4.028 14 N -0.360 5.360 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.262 4.262 18 S 0.050 5.950 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.161 1.161 27 C -0.208 4.208 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.173 0.827 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.257 0.743 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -34.559 -3.042 -14.254 37.507 hybrid contribution 0.507 0.311 -0.459 0.751 sum -34.052 -2.731 -14.713 37.195 Atomic orbital electron populations 1.23382 0.76332 1.05824 1.02250 1.86088 1.23601 1.26468 1.88181 1.18824 0.92186 0.84232 0.93652 1.21479 1.01698 0.91409 1.16814 1.18797 0.91306 0.85082 0.93636 1.86087 1.21146 1.28899 1.88180 1.23379 0.76473 1.05685 1.02245 1.20221 0.90916 0.99512 1.10216 1.19870 0.95805 0.92048 0.96386 1.20897 0.88090 0.91925 0.89419 0.84871 1.86624 1.76402 1.17590 1.55611 1.22052 0.79830 1.03184 0.97743 1.45579 1.07157 1.74522 1.08717 1.19948 0.88706 0.75340 0.83883 1.90695 1.70084 1.50537 1.32899 1.23268 0.94697 1.07463 1.00776 1.84698 1.04260 1.96525 1.09473 1.22466 0.90475 1.57567 0.97114 0.91923 1.25578 0.94397 0.93002 1.03125 1.70014 1.02604 1.48825 1.34013 0.85855 0.80700 0.80049 0.79687 1.18703 1.18355 1.16078 1.20330 0.91849 0.98544 1.10041 0.91780 0.91490 0.86169 0.82664 0.91492 0.91790 0.86185 0.84027 0.76029 0.91335 0.90773 0.74337 0.86749 0.86769 0.91385 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.29 10.50 -92.40 -0.97 -6.26 16 3 C 0.16 2.73 6.68 22.49 0.15 2.88 16 4 C -0.29 -4.44 8.02 22.46 0.18 -4.26 16 5 C 0.16 2.72 6.68 22.49 0.15 2.87 16 6 O -0.33 -5.25 10.50 -92.43 -0.97 -6.22 16 7 C 0.02 0.12 9.81 113.37 1.11 1.23 16 8 C -0.19 -3.25 9.26 22.38 0.21 -3.04 16 9 C -0.04 -0.67 5.00 -19.90 -0.10 -0.77 16 10 C 0.16 2.38 3.30 29.85 0.10 2.48 16 11 H 0.13 1.72 8.05 -2.39 -0.02 1.70 16 12 O -0.55 -8.54 12.88 -148.98 -1.92 -10.46 16 13 C 0.10 1.95 5.32 86.38 0.46 2.41 16 14 N -0.71 -16.55 5.45 -463.06 -2.52 -19.07 16 15 C 0.54 18.38 7.85 87.66 0.69 19.07 16 16 O -0.56 -24.13 15.86 -3.04 -0.05 -24.18 16 17 C -0.11 -4.20 6.16 71.23 0.44 -3.76 16 18 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 19 C -0.53 -30.99 10.04 67.95 0.68 -30.30 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 21 C 0.04 2.62 5.50 84.86 0.47 3.09 16 22 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 23 Si 0.92 45.34 27.74 68.60 1.90 47.24 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 27 C -0.19 -3.31 9.61 22.38 0.22 -3.10 16 28 H 0.06 0.36 7.66 -2.38 -0.02 0.35 16 29 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.16 1.49 4.54 -2.91 -0.01 1.48 16 32 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 33 H 0.06 0.37 7.66 -2.39 -0.02 0.35 16 34 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.14 2.02 6.60 -2.91 -0.02 2.00 16 36 H 0.39 4.27 7.39 -74.06 -0.55 3.72 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.42 7.65 8.35 -92.71 -0.77 6.87 16 40 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -79.57 378.26 0.29 -79.28 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.30 Total: 15.48 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.86 Total: -9.98 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.22 Total: -74.90 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -3.91 Total: -47.12 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -79.57 0.29 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268574148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.217 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds