Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34716 * 117.00203 * 2 1 4 4 O 1.21466 * 119.99397 * 0.02562 * 3 2 1 5 5 C 1.47719 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.15000 * 5.79487 * 5 3 2 7 7 C 1.37922 * 119.84447 * 180.31965 * 6 5 3 8 8 C 1.38387 * 120.15280 * 359.65722 * 7 6 5 9 9 C 1.38338 * 120.30311 * 359.97438 * 8 7 6 10 10 C 1.37973 * 120.14936 * 0.04593 * 9 8 7 11 11 C 1.50694 * 120.07408 * 179.97438 * 10 9 8 12 12 S 1.81404 * 109.47421 * 93.54810 * 11 10 9 13 13 O 1.42105 * 110.53956 * 68.37036 * 12 11 10 14 14 O 1.42102 * 110.54199 * 291.62410 * 12 11 10 15 15 N 1.65590 * 104.45370 * 179.97438 * 12 11 10 16 16 C 1.46507 * 119.99982 * 270.00234 * 15 12 11 17 17 C 1.46496 * 120.00318 * 89.99914 * 15 12 11 18 18 H 1.09004 * 109.46999 * 0.02562 * 17 15 12 19 19 C 1.53003 * 109.47614 * 240.00469 * 17 15 12 20 20 C 1.50702 * 109.47385 * 119.99980 * 17 15 12 21 21 H 1.07996 * 119.99783 * 0.02562 * 20 17 15 22 22 C 1.37877 * 119.99852 * 180.02562 * 20 17 15 23 23 N 1.31510 * 120.00360 * 0.02562 * 22 20 17 24 24 Si 1.86806 * 119.99449 * 180.02562 * 22 20 17 25 25 H 1.48493 * 109.47389 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46891 * 120.00123 * 24 22 20 27 27 H 1.48504 * 109.47030 * 239.99944 * 24 22 20 28 28 H 1.09008 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47295 * 299.99911 * 1 2 3 30 30 H 1.09000 * 109.47143 * 60.00119 * 1 2 3 31 31 H 1.07996 * 120.07995 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.92513 * 179.68060 * 7 6 5 33 33 H 1.08007 * 119.84617 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.92591 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47811 * 333.55053 * 11 10 9 36 36 H 1.08995 * 109.47393 * 213.54685 * 11 10 9 37 37 H 1.09002 * 109.46976 * 269.99648 * 16 15 12 38 38 H 1.08993 * 109.46922 * 29.99552 * 16 15 12 39 39 H 1.09002 * 109.47037 * 149.99940 * 16 15 12 40 40 H 1.08999 * 109.47031 * 59.99607 * 19 17 15 41 41 H 1.08995 * 109.47529 * 179.97438 * 19 17 15 42 42 H 1.09003 * 109.46745 * 299.99548 * 19 17 15 43 43 H 0.97006 * 120.00032 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 -0.0006 6 6 4.3020 0.1146 -0.1230 7 6 5.6790 0.1934 -0.1162 8 6 6.3043 1.4220 0.0045 9 6 5.5543 2.5788 0.1186 10 6 4.1761 2.5144 0.1136 11 6 3.3607 3.7755 0.2384 12 16 2.9429 4.3918 -1.4157 13 8 2.0313 3.5123 -2.0599 14 8 4.1077 4.8573 -2.0834 15 7 2.0574 5.7626 -1.1346 16 6 0.6011 5.6788 -0.9984 17 6 2.7302 7.0590 -1.0220 18 1 3.8041 6.9234 -1.1505 19 6 2.4530 7.6596 0.3576 20 6 2.2108 7.9889 -2.0882 21 1 1.4548 7.6483 -2.7802 22 6 2.7008 9.2743 -2.1802 23 7 3.6218 9.6889 -1.3380 24 14 2.0564 10.4270 -3.5015 25 1 1.0319 9.7243 -4.3149 26 1 1.4468 11.6208 -2.8624 27 1 3.1778 10.8526 -4.3770 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8153 -0.8449 -0.2173 32 1 6.2706 -0.7058 -0.2056 33 1 7.3830 1.4780 0.0089 34 1 6.0487 3.5344 0.2120 35 1 3.9383 4.5304 0.7721 36 1 2.4444 3.5628 0.7890 37 1 0.1371 5.7994 -1.9773 38 1 0.3302 4.7074 -0.5850 39 1 0.2526 6.4675 -0.3315 40 1 2.8287 6.9870 1.1288 41 1 2.9539 8.6239 0.4415 42 1 1.3790 7.7953 0.4856 43 1 3.9667 10.5932 -1.4030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269632824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -113.510543 kcal Electronic energy + Delta-G solvation = -28950.317415 eV Core-core repulsion = 24895.800990 eV Total energy + Delta-G solvation = -4054.516425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80017 -39.02851 -36.65748 -36.32204 -36.07323 -35.15947 -33.00406 -32.51385 -31.75241 -29.01723 -28.17531 -27.24782 -25.48325 -25.07025 -24.06962 -22.21224 -21.06108 -20.52953 -18.21354 -17.94187 -17.11015 -16.93539 -16.58664 -16.31974 -16.19851 -15.68456 -15.42784 -15.04090 -14.81367 -14.45778 -13.76034 -13.64718 -13.44017 -13.32959 -13.00909 -12.77195 -12.73433 -12.47893 -12.29136 -11.98965 -11.87128 -11.61607 -11.47034 -11.31892 -11.26648 -11.11528 -10.91487 -10.83470 -10.76310 -10.69970 -10.35403 -10.23552 -10.20048 -9.92083 -9.28402 -9.18597 -8.94314 -8.40833 -7.82569 -6.02648 -4.07984 0.39803 0.80840 1.27259 2.45721 2.55600 3.31421 3.38975 3.42067 3.47539 3.53710 4.26927 4.42397 4.44614 4.60122 4.63053 4.74014 4.86872 5.01002 5.09642 5.13051 5.17650 5.29022 5.34566 5.44448 5.46232 5.67273 5.76609 5.82033 5.99190 6.08895 6.16731 6.30757 6.37982 6.50364 6.57959 6.70166 6.80534 6.84813 7.04450 7.51629 7.67877 7.69271 7.84399 8.09098 8.33355 8.94636 9.57193 11.03355 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003787 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.791471 B = 7391.380253 C = 8329.759811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.505 3.495 4 O -0.480 6.480 5 C -0.123 4.123 6 C -0.061 4.061 7 C -0.134 4.134 8 C -0.079 4.079 9 C -0.120 4.120 10 C -0.014 4.014 11 C -0.618 4.618 12 S 2.611 3.389 13 O -0.954 6.954 14 O -0.951 6.951 15 N -0.980 5.980 16 C 0.109 3.891 17 C 0.263 3.737 18 H 0.060 0.940 19 C -0.152 4.152 20 C -0.513 4.513 21 H 0.063 0.937 22 C 0.062 3.938 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.163 0.837 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -19.876 7.439 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.350 3.650 4 O -0.368 6.368 5 C -0.125 4.125 6 C -0.079 4.079 7 C -0.152 4.152 8 C -0.097 4.097 9 C -0.138 4.138 10 C -0.016 4.016 11 C -0.741 4.741 12 S 2.701 3.299 13 O -0.944 6.944 14 O -0.941 6.941 15 N -0.819 5.819 16 C -0.037 4.037 17 C 0.160 3.840 18 H 0.077 0.923 19 C -0.211 4.211 20 C -0.553 4.553 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.539 -19.761 6.664 20.861 hybrid contribution -0.538 0.886 0.149 1.047 sum 0.002 -18.875 6.813 20.067 Atomic orbital electron populations 1.23303 0.75743 1.03550 1.03139 1.86480 1.23765 1.32435 1.84663 1.21010 0.88806 0.81747 0.73484 1.90760 1.66641 1.35329 1.44084 1.18995 0.89621 0.94384 1.09532 1.21446 0.93977 0.97625 0.94877 1.21225 0.94287 0.98329 1.01351 1.21479 1.00701 0.92084 0.95484 1.21247 0.92206 1.00121 1.00257 1.19163 0.93761 0.91650 0.97033 1.30361 1.10448 1.03637 1.29641 1.05057 0.74466 0.73787 0.76554 1.93517 1.62902 1.66847 1.71181 1.93583 1.51161 1.79470 1.69914 1.57426 1.15057 1.21751 1.87695 1.21174 0.80246 1.00816 1.01441 1.18789 0.93290 0.77837 0.94081 0.92259 1.22170 1.00239 1.02689 0.96020 1.21365 1.22969 0.96442 1.14512 0.91858 1.24906 0.94937 0.97961 0.96174 1.69865 1.28561 1.18139 1.36595 0.86444 0.78844 0.80490 0.81671 1.19712 1.21017 1.20896 0.88163 0.91801 0.91198 0.84033 0.84730 0.84627 0.83924 0.84505 0.81986 0.93375 0.92451 0.91289 0.97169 0.88738 0.94551 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.37 9.83 -40.54 -0.40 -4.77 16 3 C 0.51 7.56 7.75 34.60 0.27 7.82 16 4 O -0.48 -8.18 10.75 -26.52 -0.28 -8.47 16 5 C -0.12 -1.74 5.87 -104.99 -0.62 -2.35 16 6 C -0.06 -0.66 9.62 -39.17 -0.38 -1.03 16 7 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 8 C -0.08 -0.79 10.04 -39.49 -0.40 -1.18 16 9 C -0.12 -1.53 9.67 -39.64 -0.38 -1.91 16 10 C -0.01 -0.21 5.17 -104.21 -0.54 -0.75 16 11 C -0.62 -10.15 5.48 36.00 0.20 -9.95 16 12 S 2.61 55.17 5.20 -107.50 -0.56 54.61 16 13 O -0.95 -21.33 14.85 -66.27 -0.98 -22.31 16 14 O -0.95 -23.11 16.57 -57.54 -0.95 -24.07 16 15 N -0.98 -21.79 2.99 -115.85 -0.35 -22.14 16 16 C 0.11 2.15 9.44 59.85 0.56 2.71 16 17 C 0.26 6.66 2.57 -69.08 -0.18 6.49 16 18 H 0.06 1.63 6.87 -51.93 -0.36 1.28 16 19 C -0.15 -3.51 8.95 37.16 0.33 -3.17 16 20 C -0.51 -14.30 8.37 -34.44 -0.29 -14.59 16 21 H 0.06 1.78 7.65 -52.49 -0.40 1.38 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 24 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.19 7.63 -52.49 -0.40 0.79 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.14 2.00 8.06 -51.92 -0.42 1.58 16 36 H 0.16 2.57 5.58 -51.93 -0.29 2.28 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 39 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 42 H 0.04 0.79 6.66 -51.93 -0.35 0.45 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -34.80 367.13 -9.01 -43.81 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.78 Total: 2.26 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.84 Total: -16.49 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.28 Total: -46.66 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -2.62 Total: -59.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 55.17 SS G_CDS: -0.56 Total: 54.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.80 -9.01 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269632824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.702 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds