Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00094 * 2 1 4 4 O 1.21464 * 120.00200 * 359.97438 * 3 2 1 5 5 C 1.47730 * 120.00002 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.15114 * 5.79621 * 5 3 2 7 7 C 1.37920 * 119.85018 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15085 * 359.73210 * 7 6 5 9 9 C 1.38344 * 120.30011 * 0.55011 * 8 7 6 10 10 C 1.37965 * 120.14984 * 359.44840 * 9 8 7 11 11 C 1.50703 * 120.07506 * 180.30121 * 10 9 8 12 12 S 1.81395 * 109.47398 * 93.16900 * 11 10 9 13 13 O 1.42094 * 110.54779 * 291.62582 * 12 11 10 14 14 O 1.42103 * 110.54275 * 68.37423 * 12 11 10 15 15 N 1.65604 * 104.45007 * 179.97438 * 12 11 10 16 16 C 1.46502 * 120.00267 * 270.00037 * 15 12 11 17 17 C 1.46502 * 119.99879 * 90.00271 * 15 12 11 18 18 H 1.09001 * 109.46690 * 359.97438 * 17 15 12 19 19 C 1.52995 * 109.47143 * 119.99822 * 17 15 12 20 20 C 1.50702 * 109.46972 * 239.99989 * 17 15 12 21 21 H 1.08002 * 119.99938 * 359.97438 * 20 17 15 22 22 C 1.37870 * 119.99737 * 179.97438 * 20 17 15 23 23 N 1.31511 * 120.00274 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00050 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.47039 * 59.99841 * 24 22 20 26 26 H 1.48492 * 109.47530 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47223 * 300.00228 * 24 22 20 28 28 H 1.08995 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47183 * 299.99958 * 1 2 3 30 30 H 1.09003 * 109.46883 * 59.99881 * 1 2 3 31 31 H 1.08001 * 120.07364 * 0.02562 * 6 5 3 32 32 H 1.08008 * 119.92449 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.85071 * 180.26954 * 8 7 6 34 34 H 1.08008 * 119.92829 * 179.72557 * 9 8 7 35 35 H 1.09006 * 109.46593 * 213.17245 * 11 10 9 36 36 H 1.08996 * 109.47447 * 333.16704 * 11 10 9 37 37 H 1.09003 * 109.46849 * 89.99428 * 16 15 12 38 38 H 1.08995 * 109.47124 * 210.00406 * 16 15 12 39 39 H 1.09006 * 109.46991 * 330.00023 * 16 15 12 40 40 H 1.09005 * 109.46976 * 60.00017 * 19 17 15 41 41 H 1.09000 * 109.47402 * 180.02562 * 19 17 15 42 42 H 1.08996 * 109.47662 * 300.00166 * 19 17 15 43 43 H 0.97003 * 120.00122 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3021 0.1145 -0.1231 7 6 5.6790 0.1938 -0.1223 8 6 6.3044 1.4229 -0.0061 9 6 5.5545 2.5784 0.1214 10 6 4.1763 2.5135 0.1221 11 6 3.3610 3.7740 0.2543 12 16 2.9453 4.4012 -1.3962 13 8 4.1109 4.8708 -2.0594 14 8 2.0344 3.5262 -2.0473 15 7 2.0597 5.7703 -1.1070 16 6 0.6032 5.6860 -0.9732 17 6 2.7327 7.0659 -0.9851 18 1 3.8068 6.9307 -1.1123 19 6 2.2068 8.0171 -2.0619 20 6 2.4580 7.6484 0.3774 21 1 1.8432 7.1078 1.0818 22 6 2.9915 8.8714 0.7245 23 7 3.7405 9.5294 -0.1331 24 14 2.6505 9.5938 2.4130 25 1 3.1598 8.6703 3.4586 26 1 3.3337 10.9063 2.5372 27 1 1.1873 9.7785 2.5861 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8153 -0.8448 -0.2181 32 1 6.2706 -0.7049 -0.2166 33 1 7.3829 1.4798 -0.0105 34 1 6.0489 3.5340 0.2161 35 1 2.4440 3.5576 0.8024 36 1 3.9380 4.5251 0.7937 37 1 0.3436 5.5170 0.0719 38 1 0.1525 6.6183 -1.3134 39 1 0.2300 4.8599 -1.5784 40 1 1.1327 8.1521 -1.9343 41 1 2.7079 8.9809 -1.9716 42 1 2.4054 7.5958 -3.0474 43 1 4.1162 10.3897 0.1113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269632828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -114.919709 kcal Electronic energy + Delta-G solvation = -29047.358351 eV Core-core repulsion = 24992.780819 eV Total energy + Delta-G solvation = -4054.577531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74895 -38.97815 -36.63201 -36.31989 -36.07417 -35.19729 -32.93534 -32.55840 -31.70072 -29.00316 -28.11894 -27.18113 -25.45722 -25.09272 -24.01767 -22.13757 -20.98831 -20.57839 -18.20065 -17.89930 -17.04373 -16.95269 -16.47752 -16.42929 -16.08719 -15.63250 -15.44997 -15.05647 -14.76706 -14.50274 -13.70159 -13.61130 -13.45439 -13.26365 -13.04761 -12.73451 -12.69515 -12.38862 -12.24062 -11.94298 -11.83979 -11.67402 -11.42484 -11.34260 -11.27215 -11.05964 -10.91595 -10.79587 -10.77351 -10.70568 -10.39863 -10.21698 -10.15054 -9.95020 -9.25215 -9.22973 -8.85694 -8.46566 -7.81549 -6.07675 -4.16761 0.45001 0.85825 1.32341 2.51006 2.59740 3.26463 3.32120 3.33145 3.46089 3.58212 4.28587 4.37796 4.49181 4.62396 4.67918 4.78504 4.92416 5.04215 5.13714 5.16292 5.21997 5.22425 5.40279 5.48850 5.53137 5.74784 5.83791 5.93901 6.05230 6.15621 6.22501 6.33820 6.44133 6.49728 6.63706 6.72926 6.89806 6.95234 7.16323 7.54719 7.67119 7.73053 7.81718 8.07701 8.29300 8.87265 9.49927 10.97082 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.004128 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.775619 B = 6782.092676 C = 7321.921153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.504 3.496 4 O -0.478 6.478 5 C -0.123 4.123 6 C -0.062 4.062 7 C -0.134 4.134 8 C -0.080 4.080 9 C -0.119 4.119 10 C -0.014 4.014 11 C -0.612 4.612 12 S 2.615 3.385 13 O -0.960 6.960 14 O -0.959 6.959 15 N -0.980 5.980 16 C 0.102 3.898 17 C 0.264 3.736 18 H 0.059 0.941 19 C -0.144 4.144 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.014 0.986 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -18.983 1.812 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.348 3.652 4 O -0.365 6.365 5 C -0.125 4.125 6 C -0.080 4.080 7 C -0.153 4.153 8 C -0.098 4.098 9 C -0.138 4.138 10 C -0.016 4.016 11 C -0.736 4.736 12 S 2.707 3.293 13 O -0.950 6.950 14 O -0.949 6.949 15 N -0.819 5.819 16 C -0.044 4.044 17 C 0.161 3.839 18 H 0.077 0.923 19 C -0.204 4.204 20 C -0.570 4.570 21 H 0.081 0.919 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.033 0.967 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.026 -18.833 0.964 18.858 hybrid contribution -0.419 0.679 1.837 2.002 sum -0.392 -18.154 2.800 18.373 Atomic orbital electron populations 1.23291 0.75815 1.03488 1.03124 1.86479 1.23709 1.32500 1.84730 1.21023 0.88830 0.81750 0.73603 1.90784 1.66611 1.35255 1.43879 1.19003 0.89603 0.94398 1.09528 1.21434 0.93969 0.97587 0.95021 1.21213 0.94283 0.98282 1.01500 1.21476 1.00672 0.92098 0.95563 1.21272 0.92251 1.00157 1.00111 1.19221 0.93805 0.91777 0.96797 1.30267 1.10633 1.03642 1.29021 1.04786 0.74222 0.73770 0.76569 1.93557 1.51159 1.79597 1.70721 1.93500 1.62969 1.66969 1.71448 1.57372 1.15126 1.22003 1.87418 1.21250 0.80301 1.02439 1.00416 1.18761 0.92799 0.77305 0.94993 0.92288 1.22042 0.99855 1.02877 0.95596 1.21417 1.32211 1.04245 0.99078 0.91932 1.24924 0.94867 0.96729 0.97261 1.69875 1.33042 1.14858 1.34691 0.86606 0.78513 0.78324 0.84222 1.20301 1.21198 1.20209 0.88211 0.91787 0.91265 0.84092 0.84790 0.84674 0.83854 0.81958 0.83829 0.93956 0.90837 0.91678 0.94817 0.88880 0.96726 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.52 9.83 -40.51 -0.40 -4.92 16 3 C 0.50 7.79 7.75 34.61 0.27 8.06 16 4 O -0.48 -8.44 10.74 -26.53 -0.28 -8.73 16 5 C -0.12 -1.80 5.87 -104.98 -0.62 -2.42 16 6 C -0.06 -0.69 9.62 -39.17 -0.38 -1.07 16 7 C -0.13 -1.28 10.03 -39.64 -0.40 -1.67 16 8 C -0.08 -0.83 10.04 -39.49 -0.40 -1.23 16 9 C -0.12 -1.61 9.68 -39.64 -0.38 -1.99 16 10 C -0.01 -0.22 5.17 -104.21 -0.54 -0.76 16 11 C -0.61 -10.79 5.48 36.01 0.20 -10.60 16 12 S 2.61 55.19 5.25 -107.50 -0.56 54.63 16 13 O -0.96 -22.72 16.57 -57.54 -0.95 -23.68 16 14 O -0.96 -21.00 14.33 -66.29 -0.95 -21.95 16 15 N -0.98 -21.76 2.99 -115.85 -0.35 -22.11 16 16 C 0.10 2.00 9.88 59.85 0.59 2.60 16 17 C 0.26 6.69 2.57 -69.08 -0.18 6.51 16 18 H 0.06 1.62 6.87 -51.93 -0.36 1.27 16 19 C -0.14 -3.56 8.95 37.15 0.33 -3.22 16 20 C -0.53 -13.90 8.37 -34.44 -0.29 -14.19 16 21 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 24 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.24 7.63 -52.49 -0.40 0.84 16 32 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.16 2.82 5.59 -51.92 -0.29 2.53 16 36 H 0.14 2.41 8.06 -51.93 -0.42 1.99 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.41 6.43 -51.93 -0.33 1.08 16 39 H 0.06 1.21 6.91 -51.93 -0.36 0.85 16 40 H 0.03 0.77 6.66 -51.93 -0.35 0.43 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -33.29 366.23 -8.92 -42.21 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.74 Total: 4.29 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.81 Total: -16.93 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.28 Total: -46.00 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -2.59 Total: -59.27 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.56 Total: 54.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.29 -8.92 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269632828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.707 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds