Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34707 * 117.00094 * 2 1 4 4 O 1.21464 * 120.00200 * 359.97438 * 3 2 1 5 5 C 1.47730 * 120.00002 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.15114 * 5.79621 * 5 3 2 7 7 C 1.37920 * 119.85018 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15085 * 359.73210 * 7 6 5 9 9 C 1.38344 * 120.30011 * 0.55011 * 8 7 6 10 10 C 1.37965 * 120.14984 * 359.44840 * 9 8 7 11 11 C 1.50703 * 120.07506 * 180.30121 * 10 9 8 12 12 S 1.81395 * 109.47398 * 93.16900 * 11 10 9 13 13 O 1.42094 * 110.54779 * 291.62582 * 12 11 10 14 14 O 1.42103 * 110.54275 * 68.37423 * 12 11 10 15 15 N 1.65604 * 104.45007 * 179.97438 * 12 11 10 16 16 C 1.46502 * 120.00267 * 270.00037 * 15 12 11 17 17 C 1.46502 * 119.99879 * 90.00271 * 15 12 11 18 18 H 1.09001 * 109.46690 * 359.97438 * 17 15 12 19 19 C 1.52995 * 109.47143 * 119.99822 * 17 15 12 20 20 C 1.50702 * 109.46972 * 239.99989 * 17 15 12 21 21 H 1.08002 * 119.99938 * 359.97438 * 20 17 15 22 22 C 1.37870 * 119.99737 * 179.97438 * 20 17 15 23 23 N 1.31511 * 120.00274 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00050 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.47039 * 59.99841 * 24 22 20 26 26 H 1.48492 * 109.47530 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47223 * 300.00228 * 24 22 20 28 28 H 1.08995 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47183 * 299.99958 * 1 2 3 30 30 H 1.09003 * 109.46883 * 59.99881 * 1 2 3 31 31 H 1.08001 * 120.07364 * 0.02562 * 6 5 3 32 32 H 1.08008 * 119.92449 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.85071 * 180.26954 * 8 7 6 34 34 H 1.08008 * 119.92829 * 179.72557 * 9 8 7 35 35 H 1.09006 * 109.46593 * 213.17245 * 11 10 9 36 36 H 1.08996 * 109.47447 * 333.16704 * 11 10 9 37 37 H 1.09003 * 109.46849 * 89.99428 * 16 15 12 38 38 H 1.08995 * 109.47124 * 210.00406 * 16 15 12 39 39 H 1.09006 * 109.46991 * 330.00023 * 16 15 12 40 40 H 1.09005 * 109.46976 * 60.00017 * 19 17 15 41 41 H 1.09000 * 109.47402 * 180.02562 * 19 17 15 42 42 H 1.08996 * 109.47662 * 300.00166 * 19 17 15 43 43 H 0.97003 * 120.00122 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3021 0.1145 -0.1231 7 6 5.6790 0.1938 -0.1223 8 6 6.3044 1.4229 -0.0061 9 6 5.5545 2.5784 0.1214 10 6 4.1763 2.5135 0.1221 11 6 3.3610 3.7740 0.2543 12 16 2.9453 4.4012 -1.3962 13 8 4.1109 4.8708 -2.0594 14 8 2.0344 3.5262 -2.0473 15 7 2.0597 5.7703 -1.1070 16 6 0.6032 5.6860 -0.9732 17 6 2.7327 7.0659 -0.9851 18 1 3.8068 6.9307 -1.1123 19 6 2.2068 8.0171 -2.0619 20 6 2.4580 7.6484 0.3774 21 1 1.8432 7.1078 1.0818 22 6 2.9915 8.8714 0.7245 23 7 3.7405 9.5294 -0.1331 24 14 2.6505 9.5938 2.4130 25 1 3.1598 8.6703 3.4586 26 1 3.3337 10.9063 2.5372 27 1 1.1873 9.7785 2.5861 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8153 -0.8448 -0.2181 32 1 6.2706 -0.7049 -0.2166 33 1 7.3829 1.4798 -0.0105 34 1 6.0489 3.5340 0.2161 35 1 2.4440 3.5576 0.8024 36 1 3.9380 4.5251 0.7937 37 1 0.3436 5.5170 0.0719 38 1 0.1525 6.6183 -1.3134 39 1 0.2300 4.8599 -1.5784 40 1 1.1327 8.1521 -1.9343 41 1 2.7079 8.9809 -1.9716 42 1 2.4054 7.5958 -3.0474 43 1 4.1162 10.3897 0.1113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269632828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -135.983658 kcal Electronic energy + Delta-G solvation = -29048.271752 eV Core-core repulsion = 24992.780819 eV Total energy + Delta-G solvation = -4055.490933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80542 -39.93977 -38.21860 -37.91470 -37.54343 -36.93442 -34.53012 -34.01348 -32.64150 -30.93351 -29.10328 -28.21725 -27.30978 -26.98159 -24.97937 -23.16339 -22.56927 -21.91089 -19.79594 -19.00917 -18.68647 -18.35554 -18.11677 -17.65686 -17.27181 -17.22539 -16.68089 -16.51994 -16.09903 -15.68076 -15.26465 -14.93284 -14.62946 -14.56904 -14.50791 -14.26954 -13.78193 -13.66935 -13.63080 -13.44828 -13.19998 -13.11323 -13.07349 -12.91974 -12.82228 -12.73054 -12.60218 -12.35112 -12.26101 -12.18391 -12.08704 -11.82576 -11.77826 -11.30593 -11.16409 -10.51136 -10.16841 -10.00297 -9.54265 -8.10474 -6.26787 -0.83534 -0.32412 0.25885 1.45071 1.45676 1.45988 1.53716 1.62199 1.79796 2.43967 2.61952 2.85479 3.16741 3.22110 3.30449 3.56794 3.77249 3.97614 4.10175 4.15499 4.32088 4.32607 4.36922 4.39202 4.44522 4.66007 4.71933 4.77003 4.79254 4.90094 4.93760 5.00933 5.09684 5.15007 5.15365 5.22020 5.34346 5.38948 5.58170 5.71813 5.77753 5.82541 6.07140 6.27175 6.63888 6.82499 7.43328 8.93962 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.004128 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.775619 B = 6782.092676 C = 7321.921153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.497 3.503 4 O -0.512 6.512 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.116 4.116 8 C -0.073 4.073 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.586 4.586 12 S 2.613 3.387 13 O -0.996 6.996 14 O -0.972 6.972 15 N -0.991 5.991 16 C 0.100 3.900 17 C 0.268 3.732 18 H 0.028 0.972 19 C -0.139 4.139 20 C -0.539 4.539 21 H 0.066 0.934 22 C 0.019 3.981 23 N -0.916 5.916 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.270 1.270 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.168 0.832 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.017 0.983 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -21.687 3.221 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.343 3.657 4 O -0.402 6.402 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.134 4.134 8 C -0.090 4.090 9 C -0.156 4.156 10 C -0.053 4.053 11 C -0.714 4.714 12 S 2.710 3.290 13 O -0.987 6.987 14 O -0.963 6.963 15 N -0.829 5.829 16 C -0.045 4.045 17 C 0.164 3.836 18 H 0.046 0.954 19 C -0.198 4.198 20 C -0.578 4.578 21 H 0.085 0.915 22 C -0.181 4.181 23 N -0.554 5.554 24 Si 0.784 3.216 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.198 0.802 33 H 0.189 0.811 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.579 -21.540 2.327 21.673 hybrid contribution -0.545 1.310 1.394 1.989 sum 0.034 -20.231 3.721 20.570 Atomic orbital electron populations 1.23604 0.74273 1.05957 1.02605 1.86470 1.25197 1.31009 1.84096 1.21390 0.89450 0.82024 0.72829 1.90751 1.67385 1.36379 1.45694 1.19188 0.89505 0.95225 1.10872 1.21837 0.94821 0.97347 0.93588 1.21777 0.93804 0.99526 0.98292 1.21943 1.02378 0.91245 0.93473 1.21483 0.91708 1.01664 1.00767 1.19234 0.94634 0.91163 1.00242 1.29869 1.11365 1.05072 1.25119 1.04638 0.73357 0.73281 0.77756 1.93500 1.52141 1.80197 1.72854 1.93467 1.63147 1.66743 1.72923 1.57282 1.16182 1.21393 1.88084 1.21360 0.79004 1.02809 1.01337 1.18478 0.91443 0.78663 0.95010 0.95374 1.21944 1.00249 1.01882 0.95757 1.21629 1.32197 1.04484 0.99472 0.91546 1.25692 0.94608 0.97083 1.00732 1.70006 1.33838 1.15155 1.36445 0.85602 0.78524 0.77509 0.79938 1.19631 1.20997 1.19543 0.84215 0.91703 0.92482 0.81498 0.80195 0.81074 0.84165 0.81822 0.83803 0.92858 0.90704 0.90900 0.93701 0.90783 0.96413 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.35 -8.40 9.83 -56.16 -0.55 -8.95 16 3 C 0.50 15.20 7.75 70.33 0.55 15.75 16 4 O -0.51 -18.40 10.74 26.92 0.29 -18.11 16 5 C -0.15 -4.11 5.87 -20.10 -0.12 -4.23 16 6 C -0.06 -1.11 9.62 22.53 0.22 -0.90 16 7 C -0.12 -1.67 10.03 22.23 0.22 -1.44 16 8 C -0.07 -1.27 10.04 22.33 0.22 -1.04 16 9 C -0.14 -3.58 9.68 22.23 0.22 -3.37 16 10 C -0.05 -1.59 5.17 -19.60 -0.10 -1.69 16 11 C -0.59 -21.32 5.48 71.24 0.39 -20.93 16 12 S 2.61 114.52 5.25 -56.49 -0.30 114.22 16 13 O -1.00 -49.52 16.57 -127.65 -2.12 -51.64 16 14 O -0.97 -43.93 14.33 -119.29 -1.71 -45.64 16 15 N -0.99 -45.42 2.99 -520.44 -1.56 -46.98 16 16 C 0.10 4.00 9.88 127.77 1.26 5.26 16 17 C 0.27 14.04 2.57 44.24 0.11 14.15 16 18 H 0.03 1.64 6.87 -2.39 -0.02 1.63 16 19 C -0.14 -7.07 8.95 71.98 0.64 -6.42 16 20 C -0.54 -28.68 8.37 25.60 0.21 -28.46 16 21 H 0.07 3.41 7.65 -2.91 -0.02 3.39 16 22 C 0.02 1.01 5.30 84.65 0.45 1.46 16 23 N -0.92 -51.67 11.32 21.44 0.24 -51.42 16 24 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.17 2.26 7.63 -2.91 -0.02 2.23 16 32 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.16 5.90 5.59 -2.39 -0.01 5.88 16 36 H 0.14 5.07 8.06 -2.39 -0.02 5.06 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.90 6.43 -2.39 -0.02 2.89 16 39 H 0.07 2.76 6.91 -2.38 -0.02 2.74 16 40 H 0.04 2.11 6.66 -2.38 -0.02 2.10 16 41 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -74.63 366.23 2.83 -71.80 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.03 Total: 22.66 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 5.48 Total: -30.15 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -1.32 Total: -98.40 kcal Atomic # 8 Polarization: -120.25 SS G_CDS: -4.09 Total: -124.34 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 114.52 SS G_CDS: -0.30 Total: 114.22 kcal Total: -74.63 2.83 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269632828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.186 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds