Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 117.00014 * 2 1 4 4 C 1.38790 * 120.07993 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.92283 * 179.97438 * 4 3 2 6 6 C 1.38555 * 120.39607 * 0.02562 * 5 4 3 7 7 C 1.38423 * 119.91111 * 0.08879 * 6 5 4 8 8 C 1.38449 * 120.07861 * 180.02562 * 3 2 1 9 9 O 1.35853 * 121.79831 * 179.51463 * 7 6 5 10 10 C 1.42805 * 117.87370 * 17.25565 * 9 7 6 11 11 C 1.53410 * 108.38346 * 310.81576 * 10 9 7 12 12 H 1.08997 * 109.72841 * 304.98910 * 11 10 9 13 13 N 1.46502 * 109.69674 * 184.41840 * 11 10 9 14 14 S 1.65595 * 120.00123 * 96.15335 * 13 11 10 15 15 O 1.42093 * 104.27935 * 308.92604 * 14 13 11 16 16 O 1.42105 * 104.27413 * 181.06655 * 14 13 11 17 17 C 1.81401 * 104.44822 * 65.00073 * 14 13 11 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.50798 * 118.70876 * 180.15337 * 6 5 4 28 28 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46739 * 299.99682 * 1 2 3 30 30 H 1.08994 * 109.46862 * 60.00194 * 1 2 3 31 31 H 1.07997 * 120.03946 * 359.96775 * 4 3 2 32 32 H 1.08004 * 119.80319 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.91729 * 359.95850 * 8 3 2 34 34 H 1.08998 * 109.69130 * 191.08138 * 10 9 7 35 35 H 1.09000 * 109.66433 * 70.52489 * 10 9 7 36 36 H 0.96997 * 119.99542 * 276.15320 * 13 11 10 37 37 H 1.09002 * 109.47085 * 299.99812 * 17 14 13 38 38 H 1.09001 * 109.47417 * 59.99938 * 17 14 13 39 39 H 1.09002 * 109.47153 * 299.99990 * 18 17 14 40 40 H 1.08998 * 109.47533 * 59.99620 * 18 17 14 41 41 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.43041 * 77.74907 * 27 6 5 43 43 H 1.08994 * 109.39810 * 317.85826 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2917 2.3759 0.0005 5 6 1.9216 3.6038 0.0011 6 6 3.3050 3.6821 0.0005 7 6 4.0619 2.5231 -0.0024 8 6 3.4285 1.2852 -0.0005 9 8 5.4200 2.5552 -0.0128 10 6 6.0619 3.7770 0.3538 11 6 5.4137 4.9204 -0.4374 12 1 5.4573 4.7006 -1.5041 13 7 6.1203 6.1739 -0.1623 14 16 7.3044 6.7004 -1.1933 15 8 8.1631 5.5782 -1.3429 16 8 7.7709 7.9066 -0.6043 17 6 6.4320 7.0460 -2.7457 18 6 7.4305 7.5465 -3.7913 19 6 6.7060 7.8331 -5.0812 20 1 5.6398 7.6744 -5.1484 21 6 7.4039 8.2987 -6.1753 22 7 8.7022 8.4923 -6.0933 23 14 6.5059 8.6532 -7.7745 24 1 5.4705 9.6917 -7.5409 25 1 7.4748 9.1403 -8.7889 26 1 5.8583 7.4100 -8.2646 27 6 3.9535 5.0435 0.0047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2131 2.3216 0.0004 32 1 1.3328 4.5092 0.0019 33 1 4.0167 0.3794 -0.0003 34 1 7.1237 3.7205 0.1142 35 1 5.9348 3.9519 1.4222 36 1 5.8945 6.6954 0.6237 37 1 5.9553 6.1341 -3.1054 38 1 5.6731 7.8093 -2.5740 39 1 7.9069 8.4585 -3.4315 40 1 8.1898 6.7836 -3.9632 41 1 9.1932 8.8203 -6.8629 42 1 3.9130 5.4613 1.0106 43 1 3.4205 5.7004 -0.6826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271113579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -130.479658 kcal Electronic energy + Delta-G solvation = -27296.798223 eV Core-core repulsion = 23241.545961 eV Total energy + Delta-G solvation = -4055.252261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10272 -39.62267 -36.88409 -36.64902 -36.11347 -35.50972 -33.92920 -32.19867 -31.20403 -30.64999 -29.26030 -27.45468 -25.83408 -25.63341 -23.32869 -22.80099 -21.76153 -20.46240 -19.10861 -18.81152 -17.64796 -17.36677 -16.67238 -16.37661 -16.31724 -16.03339 -15.63286 -15.47905 -15.25703 -14.95689 -14.58202 -14.48254 -14.20025 -13.76052 -13.50795 -13.45692 -13.18155 -12.74039 -12.56206 -12.34863 -12.18121 -11.89728 -11.76487 -11.69381 -11.62306 -11.58963 -11.11000 -11.04588 -11.02248 -10.96197 -10.80068 -10.46501 -10.40397 -9.87417 -9.60694 -9.12691 -8.72108 -8.51944 -8.24005 -6.14345 -4.20176 0.67839 1.08818 1.12699 2.62235 2.97340 3.26080 3.31088 3.32711 3.36013 3.51310 4.10781 4.31248 4.35164 4.40880 4.45018 4.53961 4.65374 4.72693 4.73939 4.79014 4.88137 4.90747 5.10596 5.19576 5.20977 5.23932 5.33433 5.46269 5.58223 5.61664 5.65590 5.71971 5.86391 5.94211 5.99200 6.17922 6.23584 6.43453 6.91350 7.03944 7.23901 7.26590 7.32654 7.78195 8.14767 8.82863 9.44724 10.96625 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.002757 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.292799 B =10153.810532 C =11631.280276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.158 3.842 4 C -0.239 4.239 5 C -0.041 4.041 6 C -0.193 4.193 7 C 0.172 3.828 8 C -0.184 4.184 9 O -0.304 6.304 10 C 0.046 3.954 11 C 0.120 3.880 12 H 0.102 0.898 13 N -1.117 6.117 14 S 2.590 3.410 15 O -0.962 6.962 16 O -0.963 6.963 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.522 4.522 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.079 4.079 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -12.562 15.904 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.112 3.888 4 C -0.258 4.258 5 C -0.059 4.059 6 C -0.195 4.195 7 C 0.126 3.874 8 C -0.204 4.204 9 O -0.216 6.216 10 C -0.031 4.031 11 C 0.011 3.989 12 H 0.120 0.880 13 N -0.874 5.874 14 S 2.687 3.313 15 O -0.952 6.952 16 O -0.954 6.954 17 C -0.722 4.722 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.117 4.117 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.248 0.752 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.479 -12.895 15.861 25.641 hybrid contribution -1.522 0.829 -0.891 1.948 sum -17.001 -12.067 14.970 25.666 Atomic orbital electron populations 1.23075 0.78124 1.03993 1.01506 1.86063 1.21533 1.26780 1.88498 1.18533 0.91404 0.84221 0.94631 1.21079 1.00053 0.92096 1.12529 1.20646 0.92869 0.97348 0.95082 1.19667 0.94259 0.93915 1.11639 1.18332 0.82790 0.92393 0.93924 1.19586 0.91465 0.96963 1.12342 1.86070 1.15821 1.36463 1.83281 1.23686 0.98568 0.81642 0.99177 1.21312 0.92196 0.84245 1.01150 0.87992 1.55897 1.58452 1.31756 1.41295 1.05728 0.74625 0.74061 0.76845 1.93554 1.62916 1.52110 1.86636 1.93567 1.78635 1.47376 1.75792 1.30446 1.13563 1.10458 1.17756 1.18961 0.92572 0.97268 0.92251 1.20951 0.94536 1.45341 0.95288 0.92102 1.25066 0.94958 0.95235 0.99193 1.69944 1.06745 1.44944 1.31164 0.86523 0.79368 0.78762 0.82589 1.20094 1.21054 1.20045 1.20753 0.93821 0.93996 1.03174 0.88187 0.92569 0.92451 0.85295 0.85286 0.84286 0.85503 0.91119 0.75173 0.86334 0.85966 0.94799 0.94750 0.92438 0.89730 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.05 10.50 -19.42 -0.20 -3.25 16 3 C 0.16 1.65 6.68 -39.30 -0.26 1.39 16 4 C -0.24 -2.13 9.04 -39.46 -0.36 -2.48 16 5 C -0.04 -0.37 9.66 -39.55 -0.38 -0.75 16 6 C -0.19 -2.00 5.75 -104.39 -0.60 -2.60 16 7 C 0.17 2.05 6.47 -39.21 -0.25 1.80 16 8 C -0.18 -2.13 9.87 -39.20 -0.39 -2.52 16 9 O -0.30 -3.89 10.27 -19.28 -0.20 -4.09 16 10 C 0.05 0.53 6.65 37.37 0.25 0.77 16 11 C 0.12 1.32 2.79 -67.68 -0.19 1.13 16 12 H 0.10 1.19 7.18 -51.93 -0.37 0.82 16 13 N -1.12 -12.74 5.38 -4.68 -0.03 -12.77 16 14 S 2.59 43.03 5.38 -107.50 -0.58 42.45 16 15 O -0.96 -18.66 17.23 -57.54 -0.99 -19.65 16 16 O -0.96 -18.87 18.08 -57.54 -1.04 -19.91 16 17 C -0.59 -10.73 5.90 37.16 0.22 -10.51 16 18 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 19 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 23 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.08 -0.71 5.41 -27.80 -0.15 -0.86 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 0.84 6.31 -52.49 -0.33 0.51 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.13 1.57 7.55 -51.93 -0.39 1.18 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.41 3.68 8.79 -34.47 -0.30 3.38 16 37 H 0.12 1.94 7.46 -51.92 -0.39 1.56 16 38 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -35.63 370.29 -9.34 -44.97 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.93 Total: 2.09 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -1.67 Total: -25.93 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.71 Total: -38.32 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -2.43 Total: -46.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 43.03 SS G_CDS: -0.58 Total: 42.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -9.34 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271113579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.505 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds