Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00046 * 2 1 4 4 C 1.38800 * 120.08121 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.92560 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.39448 * 359.97418 * 5 4 3 7 7 C 1.38428 * 119.91334 * 359.89857 * 6 5 4 8 8 C 1.38450 * 120.08499 * 179.97438 * 3 2 1 9 9 O 1.35935 * 121.81826 * 180.47358 * 7 6 5 10 10 C 1.42823 * 117.81017 * 342.74795 * 9 7 6 11 11 C 1.53406 * 108.39463 * 49.21324 * 10 9 7 12 12 H 1.09006 * 109.69804 * 54.94100 * 11 10 9 13 13 N 1.46506 * 109.69710 * 175.53488 * 11 10 9 14 14 S 1.65605 * 119.99884 * 265.00151 * 13 11 10 15 15 O 1.42098 * 104.27788 * 181.07081 * 14 13 11 16 16 O 1.42105 * 104.27635 * 308.92905 * 14 13 11 17 17 C 1.81401 * 104.44974 * 64.99957 * 14 13 11 18 18 C 1.53004 * 109.47071 * 180.02562 * 17 14 13 19 19 C 1.50695 * 109.46962 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00420 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48489 * 109.47658 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46814 * 120.00463 * 23 21 19 26 26 H 1.48507 * 109.46868 * 239.99965 * 23 21 19 27 27 C 1.50794 * 118.70732 * 179.84736 * 6 5 4 28 28 H 1.09007 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47421 * 299.99318 * 1 2 3 30 30 H 1.09001 * 109.47342 * 59.99777 * 1 2 3 31 31 H 1.08003 * 120.03478 * 0.06255 * 4 3 2 32 32 H 1.08004 * 119.80167 * 179.97438 * 5 4 3 33 33 H 1.08008 * 119.90874 * 0.04205 * 8 3 2 34 34 H 1.09002 * 109.68886 * 289.47465 * 10 9 7 35 35 H 1.09002 * 109.68209 * 168.94803 * 10 9 7 36 36 H 0.96993 * 120.00286 * 84.99999 * 13 11 10 37 37 H 1.09003 * 109.47087 * 300.00039 * 17 14 13 38 38 H 1.09001 * 109.46987 * 59.99587 * 17 14 13 39 39 H 1.08999 * 109.46819 * 300.00324 * 18 17 14 40 40 H 1.08996 * 109.46965 * 59.99618 * 18 17 14 41 41 H 0.96998 * 119.99590 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.43367 * 42.13891 * 27 6 5 43 43 H 1.08994 * 109.39962 * 282.24371 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9215 3.6039 0.0000 6 6 3.3047 3.6822 -0.0005 7 6 4.0617 2.5232 0.0016 8 6 3.4284 1.2854 0.0005 9 8 5.4207 2.5549 0.0107 10 6 6.0612 3.7774 -0.3566 11 6 5.4139 4.9202 0.4360 12 1 5.4587 4.6992 1.5024 13 7 6.1202 6.1740 0.1608 14 16 7.3251 6.6854 1.1752 15 8 7.7508 7.9215 0.6184 16 8 6.7416 6.6273 2.4696 17 6 8.6233 5.4299 1.0052 18 6 9.8059 5.7940 1.9052 19 6 10.8841 4.7506 1.7644 20 1 10.7402 3.9116 1.0999 21 6 12.0543 4.8672 2.4841 22 7 12.2294 5.8887 3.2937 23 14 13.3912 3.5743 2.3090 24 1 12.9521 2.5359 1.3427 25 1 14.6370 4.2141 1.8152 26 1 13.6476 2.9454 3.6297 27 6 3.9532 5.0436 -0.0046 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 0.2129 2.3217 0.0020 32 1 1.3326 4.5093 0.0000 33 1 4.0165 0.3795 0.0003 34 1 5.9330 3.9527 -1.4248 35 1 7.1235 3.7212 -0.1187 36 1 5.8821 6.7044 -0.6156 37 1 8.2290 4.4573 1.2996 38 1 8.9550 5.3885 -0.0323 39 1 10.2002 6.7666 1.6112 40 1 9.4737 5.8351 2.9425 41 1 13.0529 5.9709 3.7997 42 1 3.4211 5.7008 0.6833 43 1 3.9118 5.4613 -1.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271113581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -129.791063 kcal Electronic energy + Delta-G solvation = -27352.175271 eV Core-core repulsion = 23296.952869 eV Total energy + Delta-G solvation = -4055.222402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11710 -39.63773 -36.88340 -36.68057 -36.11098 -35.50872 -33.94079 -32.21074 -31.24184 -30.66161 -29.25779 -27.46741 -26.04403 -25.47084 -23.34260 -22.81043 -21.71146 -20.51375 -19.14387 -18.80284 -17.68584 -17.36400 -16.59759 -16.44236 -16.38201 -16.04381 -15.59746 -15.45414 -15.39592 -14.95972 -14.56186 -14.44511 -14.22640 -13.77274 -13.53304 -13.49505 -13.19099 -12.75021 -12.55548 -12.36470 -12.20733 -11.86518 -11.80350 -11.65769 -11.65264 -11.52737 -11.12949 -11.10618 -11.02749 -10.94639 -10.80787 -10.42581 -10.40632 -9.89175 -9.57698 -9.12244 -8.73307 -8.52022 -8.25276 -6.14023 -4.19588 0.66895 1.07912 1.11298 2.59728 2.97018 3.25297 3.32851 3.34416 3.36225 3.49331 4.12170 4.26767 4.34208 4.37891 4.45113 4.58308 4.65165 4.68868 4.73892 4.77904 4.88908 4.91031 5.09598 5.17789 5.20271 5.21842 5.28754 5.37203 5.56532 5.61266 5.64136 5.69331 5.85682 5.92456 5.97829 6.16652 6.22304 6.42641 6.91748 7.02817 7.20857 7.26855 7.32608 7.79138 8.14896 8.84009 9.45561 10.97005 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.002697 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.892488 B =10378.045110 C =11911.178048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.157 3.843 4 C -0.238 4.238 5 C -0.042 4.042 6 C -0.192 4.192 7 C 0.171 3.829 8 C -0.183 4.183 9 O -0.302 6.302 10 C 0.036 3.964 11 C 0.113 3.887 12 H 0.110 0.890 13 N -1.117 6.117 14 S 2.589 3.411 15 O -0.963 6.963 16 O -0.962 6.962 17 C -0.594 4.594 18 C 0.029 3.971 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.074 4.074 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.415 0.585 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.091 0.909 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.257 -7.210 -10.112 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.112 3.888 4 C -0.257 4.257 5 C -0.060 4.060 6 C -0.193 4.193 7 C 0.125 3.875 8 C -0.202 4.202 9 O -0.214 6.214 10 C -0.041 4.041 11 C 0.005 3.995 12 H 0.128 0.872 13 N -0.873 5.873 14 S 2.687 3.313 15 O -0.953 6.953 16 O -0.952 6.952 17 C -0.727 4.727 18 C -0.010 4.010 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.112 4.112 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.248 0.752 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.939 -6.775 -9.242 26.541 hybrid contribution 0.563 -0.670 -0.731 1.140 sum -23.376 -7.445 -9.973 26.483 Atomic orbital electron populations 1.23074 0.78141 1.04003 1.01475 1.86066 1.21517 1.26759 1.88491 1.18532 0.91400 0.84223 0.94669 1.21081 1.00038 0.92087 1.12504 1.20634 0.92852 0.97328 0.95213 1.19674 0.94273 0.93911 1.11482 1.18330 0.82688 0.92398 0.94044 1.19595 0.91481 0.96993 1.12138 1.86104 1.15916 1.36062 1.83344 1.23824 0.98253 0.82146 0.99867 1.21392 0.92675 0.83865 1.01578 0.87192 1.55859 1.53922 1.32591 1.44959 1.05733 0.75259 0.76521 0.73802 1.93566 1.82267 1.40893 1.78590 1.93557 1.75458 1.87248 1.38958 1.30587 1.15647 1.15705 1.10757 1.18967 0.89854 0.98773 0.93441 1.21025 1.00281 1.08458 1.26141 0.91923 1.25071 0.98559 0.95905 0.94979 1.69962 1.26621 1.29365 1.26862 0.86413 0.81471 0.81342 0.78067 1.19593 1.20831 1.20785 1.20670 0.93660 0.93924 1.02993 0.88176 0.92485 0.92570 0.85296 0.85319 0.84211 0.90610 0.86141 0.75169 0.86109 0.85839 0.94759 0.94743 0.92569 0.89083 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.03 10.50 -19.43 -0.20 -3.23 16 3 C 0.16 1.64 6.68 -39.30 -0.26 1.37 16 4 C -0.24 -2.08 9.04 -39.46 -0.36 -2.44 16 5 C -0.04 -0.37 9.66 -39.55 -0.38 -0.75 16 6 C -0.19 -1.99 5.75 -104.39 -0.60 -2.59 16 7 C 0.17 2.04 6.47 -39.21 -0.25 1.79 16 8 C -0.18 -2.12 9.87 -39.20 -0.39 -2.51 16 9 O -0.30 -3.82 10.28 -19.54 -0.20 -4.02 16 10 C 0.04 0.39 6.63 37.37 0.25 0.64 16 11 C 0.11 1.27 2.92 -67.68 -0.20 1.07 16 12 H 0.11 1.39 7.50 -51.93 -0.39 1.00 16 13 N -1.12 -12.89 5.39 -4.68 -0.03 -12.91 16 14 S 2.59 43.45 5.44 -107.50 -0.58 42.87 16 15 O -0.96 -18.94 18.08 -57.54 -1.04 -19.98 16 16 O -0.96 -19.25 17.40 -57.54 -1.00 -20.25 16 17 C -0.59 -10.68 5.09 37.16 0.19 -10.49 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 23 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C -0.07 -0.69 5.40 -27.80 -0.15 -0.84 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 31 H 0.13 0.81 6.31 -52.48 -0.33 0.48 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 1.29 5.78 -51.93 -0.30 0.99 16 36 H 0.41 3.72 8.77 -34.47 -0.30 3.42 16 37 H 0.12 1.94 6.87 -51.92 -0.36 1.59 16 38 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -36.01 367.79 -9.33 -45.34 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.82 Total: 2.00 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.71 Total: -25.92 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.71 Total: -38.43 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -2.45 Total: -47.48 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 43.45 SS G_CDS: -0.58 Total: 42.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.01 -9.33 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271113581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.447 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds