Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47222 * 2 1 4 4 C 1.46500 * 119.99893 * 84.99933 * 3 2 1 5 5 C 1.50705 * 109.47211 * 85.00301 * 4 3 2 6 6 H 1.07997 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00425 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47089 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47584 * 119.99356 * 9 7 5 12 12 H 1.48501 * 109.47242 * 239.99743 * 9 7 5 13 13 S 1.65598 * 120.00174 * 264.99844 * 3 2 1 14 14 O 1.42101 * 106.40218 * 203.53700 * 13 3 2 15 15 O 1.42093 * 106.40177 * 336.46147 * 13 3 2 16 16 C 1.76198 * 107.21704 * 90.00111 * 13 3 2 17 17 C 1.38392 * 119.92623 * 269.72658 * 16 13 3 18 18 C 1.38342 * 120.30467 * 179.76579 * 17 16 13 19 19 C 1.50701 * 119.92436 * 180.25296 * 18 17 16 20 20 C 1.37971 * 120.15134 * 0.50948 * 18 17 16 21 21 C 1.50695 * 120.07618 * 179.76782 * 20 18 17 22 22 C 1.39607 * 119.84401 * 359.74515 * 20 18 17 23 23 C 1.47723 * 120.14764 * 180.02562 * 22 20 18 24 24 O 1.21467 * 119.99998 * 353.88315 * 23 22 20 25 25 O 1.34710 * 120.00085 * 173.88119 * 23 22 20 26 26 C 1.37928 * 119.92634 * 90.00255 * 16 13 3 27 27 H 1.08998 * 109.47644 * 300.00195 * 1 2 3 28 28 H 1.09001 * 109.47215 * 60.00056 * 1 2 3 29 29 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47427 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99944 * 2 1 3 32 32 H 1.09004 * 109.47346 * 205.00006 * 4 3 2 33 33 H 1.09005 * 109.47453 * 325.00331 * 4 3 2 34 34 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 35 35 H 1.08004 * 119.84763 * 0.02562 * 17 16 13 36 36 H 1.08996 * 109.47221 * 270.25102 * 19 18 17 37 37 H 1.09001 * 109.47040 * 30.25519 * 19 18 17 38 38 H 1.09007 * 109.47021 * 150.25197 * 19 18 17 39 39 H 1.08998 * 109.47438 * 263.47323 * 21 20 18 40 40 H 1.08998 * 109.47366 * 23.47413 * 21 20 18 41 41 H 1.09001 * 109.47091 * 143.47589 * 21 20 18 42 42 H 0.96697 * 117.00323 * 180.02562 * 25 23 22 43 43 H 1.07998 * 120.07482 * 359.95029 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8824 6 1 4.1720 1.1111 1.3840 7 6 3.8525 2.3605 3.0849 8 7 3.0275 3.1855 3.6921 9 14 5.5088 1.9636 3.8518 10 1 6.2449 1.0156 2.9771 11 1 6.2971 3.2131 4.0020 12 1 5.3012 1.3458 5.1862 13 16 2.4122 2.1202 -1.4286 14 8 3.3283 3.1571 -1.1048 15 8 2.7095 1.0800 -2.3498 16 6 0.9555 2.9119 -2.0253 17 6 0.0907 2.2273 -2.8611 18 6 -1.0577 2.8396 -3.3302 19 6 -1.9964 2.0842 -4.2354 20 6 -1.3429 4.1421 -2.9756 21 6 -2.5916 4.8092 -3.4919 22 6 -0.4721 4.8404 -2.1371 23 6 -0.7712 6.2350 -1.7527 24 8 -1.7149 6.8137 -2.2525 25 8 0.0027 6.8650 -0.8477 26 6 0.6827 4.2144 -1.6629 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0921 3.1803 1.0756 33 1 1.3617 1.8097 1.9454 34 1 3.2794 3.5880 4.5379 35 1 0.3111 1.2088 -3.1450 36 1 -1.7032 2.2391 -5.2737 37 1 -1.9511 1.0209 -3.9998 38 1 -3.0139 2.4462 -4.0872 39 1 -2.3488 5.4024 -4.3735 40 1 -3.3267 4.0492 -3.7565 41 1 -3.0026 5.4587 -2.7190 42 1 -0.2325 7.7768 -0.6278 43 1 1.3603 4.7488 -1.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273620823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -140.659797 kcal Electronic energy + Delta-G solvation = -28683.741447 eV Core-core repulsion = 24628.047742 eV Total energy + Delta-G solvation = -4055.693705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77731 -39.10196 -36.74681 -36.28552 -36.10445 -35.25522 -33.73581 -32.69930 -32.51265 -30.03151 -28.30174 -26.89367 -26.63547 -24.54878 -23.16118 -21.99593 -21.42481 -21.28425 -18.36371 -18.10559 -17.57343 -16.78682 -16.38909 -16.31561 -16.04030 -15.84165 -15.35060 -15.23436 -14.42287 -14.36598 -13.90520 -13.74084 -13.43462 -13.28191 -12.99806 -12.97723 -12.83431 -12.39466 -12.30638 -12.12711 -12.01076 -11.89494 -11.83403 -11.71425 -11.59150 -11.46116 -11.39211 -11.02785 -10.90721 -10.63617 -10.49321 -10.41983 -10.26325 -10.00113 -9.75400 -9.30443 -8.95675 -8.45474 -8.11532 -6.07131 -4.11067 0.40377 0.79880 1.00809 2.28823 2.88314 3.27621 3.31169 3.39108 3.44153 3.68687 4.26908 4.34970 4.44744 4.58761 4.69611 4.75459 4.96404 5.11115 5.14579 5.27772 5.30376 5.37596 5.44369 5.46947 5.57909 5.60817 5.67126 5.69847 5.78143 5.79502 5.94179 5.96529 6.07615 6.23759 6.24343 6.39908 6.55035 6.59559 6.60247 7.20457 7.35862 7.56426 7.78127 7.90216 8.18327 8.91585 9.54281 11.01480 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004245 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.528526 B = 6594.733854 C = 7814.058810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.978 5.978 4 C 0.255 3.745 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.684 3.316 14 O -0.938 6.938 15 O -0.974 6.974 16 C -0.689 4.689 17 C 0.017 3.983 18 C -0.126 4.126 19 C -0.115 4.115 20 C 0.026 3.974 21 C -0.133 4.133 22 C -0.154 4.154 23 C 0.532 3.468 24 O -0.515 6.515 25 O -0.503 6.503 26 C 0.043 3.957 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.416 0.584 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 0.047 -12.775 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.818 5.818 4 C 0.133 3.867 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.771 3.229 14 O -0.928 6.928 15 O -0.964 6.964 16 C -0.772 4.772 17 C -0.002 4.002 18 C -0.127 4.127 19 C -0.171 4.171 20 C 0.025 3.975 21 C -0.189 4.189 22 C -0.156 4.156 23 C 0.377 3.623 24 O -0.406 6.406 25 O -0.315 6.315 26 C 0.024 3.976 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.274 0.726 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.517 -0.068 -13.239 17.547 hybrid contribution 0.018 0.783 0.802 1.121 sum -11.499 0.715 -12.437 16.953 Atomic orbital electron populations 1.22287 0.97286 1.01586 1.02135 1.21215 0.93046 0.82898 1.03904 1.57439 1.81064 1.21185 1.22153 1.19130 0.97652 0.91270 0.78625 1.21509 1.01971 1.27734 1.05506 0.91958 1.24917 0.97340 0.94807 0.96863 1.69926 1.36032 1.30244 1.17188 0.86469 0.83879 0.78367 0.78899 1.19594 1.20803 1.21022 1.02342 0.73973 0.73671 0.72900 1.93616 1.58142 1.57746 1.83277 1.93495 1.83040 1.56468 1.63380 1.31624 1.25349 1.06565 1.13697 1.21059 0.90378 0.99186 0.89565 1.19784 0.97304 0.94068 1.01537 1.20869 0.98093 0.99870 0.98288 1.20069 0.94313 0.92658 0.90421 1.21314 0.93745 1.00752 1.03060 1.18934 0.99117 0.91961 1.05594 1.20735 0.79016 0.86825 0.75711 1.90819 1.29000 1.67215 1.53535 1.84638 1.56412 1.33395 1.57022 1.21306 0.93377 0.91881 0.91028 0.91810 0.93510 0.92004 0.90299 0.89256 0.94299 0.94390 0.92735 0.83738 0.90767 0.90938 0.90701 0.89894 0.91062 0.88557 0.72558 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.15 0.38 -1.96 16 2 C 0.12 1.89 6.40 -4.05 -0.03 1.87 16 3 N -0.98 -19.46 2.77 -115.66 -0.32 -19.78 16 4 C 0.25 6.14 5.10 -5.19 -0.03 6.11 16 5 C -0.53 -14.35 9.38 -34.44 -0.32 -14.67 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 S 2.68 52.03 5.65 -107.50 -0.61 51.42 16 14 O -0.94 -21.60 16.24 -57.17 -0.93 -22.53 16 15 O -0.97 -19.07 15.82 -57.17 -0.90 -19.98 16 16 C -0.69 -11.11 5.97 -39.64 -0.24 -11.35 16 17 C 0.02 0.23 8.09 -39.49 -0.32 -0.09 16 18 C -0.13 -1.48 5.87 -104.68 -0.61 -2.10 16 19 C -0.11 -0.93 9.59 36.01 0.35 -0.58 16 20 C 0.03 0.33 5.91 -104.21 -0.62 -0.29 16 21 C -0.13 -1.37 8.42 36.00 0.30 -1.07 16 22 C -0.15 -2.23 5.87 -104.98 -0.62 -2.84 16 23 C 0.53 7.27 8.20 34.61 0.28 7.55 16 24 O -0.51 -7.31 14.13 -19.24 -0.27 -7.58 16 25 O -0.50 -6.06 12.70 -40.52 -0.51 -6.58 16 26 C 0.04 0.70 9.09 -39.17 -0.36 0.34 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.58 7.03 -51.93 -0.36 0.22 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.19 6.91 -51.93 -0.36 0.83 16 31 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 32 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 33 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.14 1.70 7.60 -52.48 -0.40 1.30 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.51 5.88 -51.93 -0.31 0.20 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.56 5.71 -51.93 -0.30 0.27 16 41 H 0.10 1.12 5.85 -51.93 -0.30 0.81 16 42 H 0.42 2.85 9.11 45.56 0.42 3.27 16 43 H 0.16 2.65 7.18 -52.49 -0.38 2.27 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -34.07 370.91 -9.04 -43.11 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.88 Total: 2.15 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.92 Total: -17.43 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.42 Total: -44.57 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -2.62 Total: -56.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.61 Total: 51.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.07 -9.04 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273620823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.550 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds