Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47222 * 2 1 4 4 C 1.46500 * 119.99893 * 84.99933 * 3 2 1 5 5 C 1.50705 * 109.47211 * 85.00301 * 4 3 2 6 6 H 1.07997 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00425 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47089 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47584 * 119.99356 * 9 7 5 12 12 H 1.48501 * 109.47242 * 239.99743 * 9 7 5 13 13 S 1.65598 * 120.00174 * 264.99844 * 3 2 1 14 14 O 1.42101 * 106.40218 * 203.53700 * 13 3 2 15 15 O 1.42093 * 106.40177 * 336.46147 * 13 3 2 16 16 C 1.76198 * 107.21704 * 90.00111 * 13 3 2 17 17 C 1.38392 * 119.92623 * 269.72658 * 16 13 3 18 18 C 1.38342 * 120.30467 * 179.76579 * 17 16 13 19 19 C 1.50701 * 119.92436 * 180.25296 * 18 17 16 20 20 C 1.37971 * 120.15134 * 0.50948 * 18 17 16 21 21 C 1.50695 * 120.07618 * 179.76782 * 20 18 17 22 22 C 1.39607 * 119.84401 * 359.74515 * 20 18 17 23 23 C 1.47723 * 120.14764 * 180.02562 * 22 20 18 24 24 O 1.21467 * 119.99998 * 353.88315 * 23 22 20 25 25 O 1.34710 * 120.00085 * 173.88119 * 23 22 20 26 26 C 1.37928 * 119.92634 * 90.00255 * 16 13 3 27 27 H 1.08998 * 109.47644 * 300.00195 * 1 2 3 28 28 H 1.09001 * 109.47215 * 60.00056 * 1 2 3 29 29 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47427 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99944 * 2 1 3 32 32 H 1.09004 * 109.47346 * 205.00006 * 4 3 2 33 33 H 1.09005 * 109.47453 * 325.00331 * 4 3 2 34 34 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 35 35 H 1.08004 * 119.84763 * 0.02562 * 17 16 13 36 36 H 1.08996 * 109.47221 * 270.25102 * 19 18 17 37 37 H 1.09001 * 109.47040 * 30.25519 * 19 18 17 38 38 H 1.09007 * 109.47021 * 150.25197 * 19 18 17 39 39 H 1.08998 * 109.47438 * 263.47323 * 21 20 18 40 40 H 1.08998 * 109.47366 * 23.47413 * 21 20 18 41 41 H 1.09001 * 109.47091 * 143.47589 * 21 20 18 42 42 H 0.96697 * 117.00323 * 180.02562 * 25 23 22 43 43 H 1.07998 * 120.07482 * 359.95029 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8824 6 1 4.1720 1.1111 1.3840 7 6 3.8525 2.3605 3.0849 8 7 3.0275 3.1855 3.6921 9 14 5.5088 1.9636 3.8518 10 1 6.2449 1.0156 2.9771 11 1 6.2971 3.2131 4.0020 12 1 5.3012 1.3458 5.1862 13 16 2.4122 2.1202 -1.4286 14 8 3.3283 3.1571 -1.1048 15 8 2.7095 1.0800 -2.3498 16 6 0.9555 2.9119 -2.0253 17 6 0.0907 2.2273 -2.8611 18 6 -1.0577 2.8396 -3.3302 19 6 -1.9964 2.0842 -4.2354 20 6 -1.3429 4.1421 -2.9756 21 6 -2.5916 4.8092 -3.4919 22 6 -0.4721 4.8404 -2.1371 23 6 -0.7712 6.2350 -1.7527 24 8 -1.7149 6.8137 -2.2525 25 8 0.0027 6.8650 -0.8477 26 6 0.6827 4.2144 -1.6629 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0921 3.1803 1.0756 33 1 1.3617 1.8097 1.9454 34 1 3.2794 3.5880 4.5379 35 1 0.3111 1.2088 -3.1450 36 1 -1.7032 2.2391 -5.2737 37 1 -1.9511 1.0209 -3.9998 38 1 -3.0139 2.4462 -4.0872 39 1 -2.3488 5.4024 -4.3735 40 1 -3.3267 4.0492 -3.7565 41 1 -3.0026 5.4587 -2.7190 42 1 -0.2325 7.7768 -0.6278 43 1 1.3603 4.7488 -1.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273620823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -164.182574 kcal Electronic energy + Delta-G solvation = -28684.761471 eV Core-core repulsion = 24628.047742 eV Total energy + Delta-G solvation = -4056.713729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82232 -40.13903 -38.35427 -37.70132 -37.31011 -36.89221 -34.75988 -34.67481 -33.53781 -31.52927 -29.19921 -28.50577 -27.78981 -25.58783 -24.93577 -23.39793 -22.66755 -22.28257 -19.78494 -19.19459 -18.99812 -18.33123 -18.31263 -17.56750 -17.16128 -16.94386 -16.76526 -16.45077 -16.21749 -15.46125 -15.18447 -14.81025 -14.73782 -14.62089 -14.29524 -13.86403 -13.73936 -13.71225 -13.59805 -13.41146 -13.27949 -13.23269 -13.17579 -13.05154 -12.91384 -12.73855 -12.67202 -12.66724 -12.59786 -12.22790 -12.15548 -11.80145 -11.69082 -11.57721 -11.28964 -10.58079 -10.41459 -9.95745 -9.78602 -8.18166 -6.29528 -0.71808 -0.55331 -0.24986 1.23108 1.40177 1.42966 1.54292 1.92856 2.00484 2.35946 2.43198 2.78830 3.13089 3.20741 3.53429 3.62380 3.77547 3.96331 4.00667 4.07882 4.14927 4.45845 4.48707 4.49682 4.59773 4.64437 4.68880 4.71379 4.74159 4.86195 4.98041 5.05206 5.12784 5.16246 5.19094 5.20695 5.34242 5.42525 5.46189 5.52748 5.67638 5.73439 5.93985 6.12156 6.78890 6.86413 7.39213 8.89740 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004245 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.528526 B = 6594.733854 C = 7814.058810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.986 5.986 4 C 0.272 3.728 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.014 3.986 8 N -0.924 5.924 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.271 1.271 13 S 2.691 3.309 14 O -0.987 6.987 15 O -0.979 6.979 16 C -0.692 4.692 17 C 0.012 3.988 18 C -0.113 4.113 19 C -0.116 4.116 20 C 0.027 3.973 21 C -0.129 4.129 22 C -0.166 4.166 23 C 0.532 3.468 24 O -0.521 6.521 25 O -0.511 6.511 26 C 0.023 3.977 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.435 0.565 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 -1.193 -14.435 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.825 5.825 4 C 0.148 3.852 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.196 1.196 13 S 2.784 3.216 14 O -0.977 6.977 15 O -0.969 6.969 16 C -0.780 4.780 17 C -0.007 4.007 18 C -0.114 4.114 19 C -0.172 4.172 20 C 0.026 3.974 21 C -0.185 4.185 22 C -0.168 4.168 23 C 0.378 3.622 24 O -0.413 6.413 25 O -0.325 6.325 26 C 0.003 3.997 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.183 0.817 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.298 0.702 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.430 -1.340 -14.878 20.088 hybrid contribution 0.529 1.209 1.223 1.799 sum -12.901 -0.130 -13.655 18.786 Atomic orbital electron populations 1.22229 0.94705 1.03628 1.02004 1.21495 0.95295 0.80981 1.04180 1.57301 1.81762 1.22582 1.20820 1.18642 0.96070 0.90402 0.80065 1.21849 1.03156 1.27584 1.05906 0.92699 1.25709 1.00720 0.94717 0.97437 1.70017 1.37672 1.31057 1.17655 0.85556 0.79774 0.78185 0.78491 1.19270 1.20657 1.19611 1.01662 0.74429 0.72991 0.72559 1.93550 1.61113 1.59101 1.83969 1.93472 1.83792 1.56633 1.63032 1.30937 1.24722 1.06645 1.15699 1.21363 0.90436 1.00000 0.88860 1.20224 0.96839 0.93661 1.00644 1.21036 0.97848 1.00298 0.98057 1.20489 0.94571 0.93050 0.89260 1.21358 0.93033 1.01398 1.02673 1.19136 0.98895 0.92578 1.06159 1.20657 0.78969 0.86742 0.75813 1.90813 1.29194 1.67362 1.53891 1.84617 1.56278 1.35048 1.56570 1.21164 0.94288 0.92237 0.91998 0.93314 0.92274 0.88790 0.88816 0.90175 0.96589 0.95167 0.92440 0.81744 0.89077 0.89354 0.88862 0.89129 0.87945 0.89832 0.70220 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 10.24 71.98 0.74 -3.49 16 2 C 0.11 3.42 6.40 86.38 0.55 3.97 16 3 N -0.99 -40.34 2.77 -519.84 -1.44 -41.78 16 4 C 0.27 13.70 5.10 85.63 0.44 14.14 16 5 C -0.55 -30.67 9.38 25.60 0.24 -30.43 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.77 5.46 84.65 0.46 1.23 16 8 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 S 2.69 107.49 5.65 -56.49 -0.32 107.17 16 14 O -0.99 -48.24 16.24 -128.00 -2.08 -50.32 16 15 O -0.98 -38.28 15.82 -128.00 -2.02 -40.30 16 16 C -0.69 -22.46 5.97 22.23 0.13 -22.32 16 17 C 0.01 0.31 8.09 22.33 0.18 0.49 16 18 C -0.11 -2.29 5.87 -19.90 -0.12 -2.41 16 19 C -0.12 -1.30 9.59 71.24 0.68 -0.62 16 20 C 0.03 0.62 5.91 -19.60 -0.12 0.50 16 21 C -0.13 -2.25 8.42 71.23 0.60 -1.65 16 22 C -0.17 -4.75 5.87 -20.10 -0.12 -4.86 16 23 C 0.53 14.53 8.20 70.33 0.58 15.10 16 24 O -0.52 -14.34 14.13 19.94 0.28 -14.06 16 25 O -0.51 -12.63 12.70 -56.20 -0.71 -13.34 16 26 C 0.02 0.76 9.09 22.54 0.20 0.97 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.34 7.03 -2.39 -0.02 1.32 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.74 6.91 -2.39 -0.02 2.72 16 31 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 32 H 0.02 0.88 7.61 -2.38 -0.02 0.86 16 33 H 0.03 1.55 8.11 -2.38 -0.02 1.53 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.17 3.38 7.60 -2.91 -0.02 3.36 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.09 0.74 5.88 -2.38 -0.01 0.73 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.14 5.71 -2.39 -0.01 1.13 16 41 H 0.08 1.75 5.85 -2.39 -0.01 1.73 16 42 H 0.44 6.01 9.11 -74.06 -0.67 5.33 16 43 H 0.14 5.02 7.18 -2.91 -0.02 5.00 16 Total: -1.00 -75.67 370.91 0.85 -74.82 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.38 Total: 14.43 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.46 Total: -29.39 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -1.15 Total: -95.55 kcal Atomic # 8 Polarization: -113.48 SS G_CDS: -4.54 Total: -118.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 107.49 SS G_CDS: -0.32 Total: 107.17 kcal Total: -75.67 0.85 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273620823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.365 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds