Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47349 * 2 1 4 4 C 1.36944 * 120.00005 * 274.60850 * 3 2 1 5 5 H 1.08002 * 119.99622 * 49.48431 * 4 3 2 6 6 C 1.38810 * 120.00213 * 229.47819 * 4 3 2 7 7 N 1.31625 * 119.99773 * 17.87940 * 6 4 3 8 8 Si 1.86797 * 120.00039 * 197.87436 * 6 4 3 9 9 H 1.48499 * 109.47342 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47105 * 120.00437 * 8 6 4 11 11 H 1.48499 * 109.47034 * 240.00194 * 8 6 4 12 12 S 1.65599 * 120.00090 * 94.60700 * 3 2 1 13 13 O 1.42105 * 106.40240 * 164.42645 * 12 3 2 14 14 O 1.42096 * 106.40160 * 31.51045 * 12 3 2 15 15 C 1.76202 * 107.21807 * 277.96972 * 12 3 2 16 16 C 1.37961 * 119.92464 * 112.95401 * 15 12 3 17 17 C 1.39611 * 119.84829 * 179.97438 * 16 15 12 18 18 C 1.47727 * 120.15007 * 179.97438 * 17 16 15 19 19 O 1.21470 * 119.99938 * 0.02562 * 18 17 16 20 20 O 1.34711 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.39647 * 119.69838 * 0.02562 * 17 16 15 22 22 C 1.37922 * 119.85011 * 359.97438 * 21 17 16 23 23 C 1.38348 * 119.92234 * 292.92770 * 15 12 3 24 24 C 1.50698 * 119.85146 * 359.75056 * 23 15 12 25 25 C 1.53005 * 109.46986 * 122.57464 * 24 23 15 26 26 C 1.53001 * 109.47182 * 242.57735 * 24 23 15 27 27 H 1.09002 * 109.46919 * 299.99871 * 1 2 3 28 28 H 1.09002 * 109.47013 * 60.00125 * 1 2 3 29 29 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46919 * 240.00129 * 2 1 3 31 31 H 1.08994 * 109.46996 * 120.00504 * 2 1 3 32 32 H 0.96993 * 119.99834 * 179.97438 * 7 6 4 33 33 H 1.08004 * 120.07877 * 359.95850 * 16 15 12 34 34 H 0.96702 * 116.99848 * 179.97438 * 20 18 17 35 35 H 1.08003 * 120.07221 * 180.02562 * 21 17 16 36 36 H 1.08000 * 119.92591 * 180.02562 * 22 21 17 37 37 H 1.09003 * 109.47022 * 2.57793 * 24 23 15 38 38 H 1.09003 * 109.46971 * 60.00298 * 25 24 23 39 39 H 1.09003 * 109.46760 * 180.02562 * 25 24 23 40 40 H 1.08992 * 109.47366 * 300.00266 * 25 24 23 41 41 H 1.08995 * 109.46570 * 300.00025 * 26 24 23 42 42 H 1.09002 * 109.46814 * 60.00100 * 26 24 23 43 43 H 1.09001 * 109.46818 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1568 2.0584 -1.1821 5 1 1.3447 2.0738 -1.8939 6 6 3.3408 2.7254 -1.4655 7 7 4.4366 2.4337 -0.7971 8 14 3.3790 4.0366 -2.7953 9 1 2.0266 4.1753 -3.3928 10 1 3.7921 5.3331 -2.2004 11 1 4.3486 3.6444 -3.8495 12 16 2.4030 2.1234 1.4295 13 8 3.1696 3.2714 1.0920 14 8 2.8742 1.1021 2.2978 15 6 0.8993 2.7174 2.1299 16 6 0.4186 2.1639 3.2986 17 6 -0.7728 2.6361 3.8525 18 6 -1.2939 2.0479 5.1034 19 8 -0.6853 1.1516 5.6527 20 8 -2.4440 2.5055 5.6349 21 6 -1.4702 3.6663 3.2180 22 6 -0.9783 4.2106 2.0501 23 6 0.2036 3.7381 1.5068 24 6 0.7381 4.3420 0.2338 25 6 -0.3100 4.2092 -0.8730 26 6 1.0523 5.8216 0.4639 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.2639 2.8994 -0.9953 33 1 0.9625 1.3669 3.7839 34 1 -2.7453 2.0892 6.4541 35 1 -2.3922 4.0365 3.6414 36 1 -1.5164 5.0076 1.5586 37 1 1.6476 3.8192 -0.0624 38 1 -1.2194 4.7320 -0.5767 39 1 0.0769 4.6456 -1.7939 40 1 -0.5338 3.1552 -1.0368 41 1 0.1429 6.3443 0.7601 42 1 1.7990 5.9161 1.2523 43 1 1.4385 6.2585 -0.4571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273685792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -135.007657 kcal Electronic energy + Delta-G solvation = -30158.376741 eV Core-core repulsion = 26102.928131 eV Total energy + Delta-G solvation = -4055.448610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32121 -38.89210 -36.31923 -36.03308 -35.72250 -34.57283 -34.09960 -32.33398 -30.93736 -29.95946 -29.13667 -26.67078 -24.78248 -24.71146 -22.86588 -21.69092 -21.56943 -19.69787 -18.93035 -18.30406 -17.62797 -16.60293 -15.94417 -15.69092 -15.57967 -15.11794 -14.99435 -14.87357 -14.18632 -13.88919 -13.50752 -13.32347 -13.23405 -13.22399 -12.95797 -12.60288 -12.46568 -12.18119 -12.05329 -11.74691 -11.57839 -11.52221 -11.38316 -11.29867 -11.04559 -10.72775 -10.68939 -10.64205 -10.49571 -10.46339 -10.39296 -10.32053 -10.14964 -9.67105 -9.43473 -8.97379 -8.73313 -8.59693 -7.74866 -6.63464 -4.26971 0.84457 1.35909 1.94418 2.61611 3.04125 3.13402 3.18181 3.23951 3.82405 4.04630 4.59946 4.84823 4.92931 4.95854 5.13562 5.23691 5.36685 5.57345 5.59349 5.72188 5.82115 5.85170 5.96093 5.99225 6.04588 6.06043 6.07601 6.22664 6.26804 6.28214 6.38845 6.39696 6.46211 6.47485 6.56554 6.61860 6.72100 6.80369 6.90138 7.05309 7.16744 7.31386 7.40936 7.90841 8.13285 8.77698 9.22979 10.43987 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.005433 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.263204 B = 5152.249980 C = 5863.995305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.123 3.877 3 N -0.816 5.816 4 C -0.267 4.267 5 H 0.087 0.913 6 C 0.057 3.943 7 N -0.783 5.783 8 Si 0.909 3.091 9 H -0.259 1.259 10 H -0.270 1.270 11 H -0.278 1.278 12 S 2.559 3.441 13 O -0.941 6.941 14 O -1.007 7.007 15 C -0.679 4.679 16 C 0.031 3.969 17 C -0.169 4.169 18 C 0.529 3.471 19 O -0.515 6.515 20 O -0.516 6.516 21 C -0.032 4.032 22 C -0.160 4.160 23 C 0.072 3.928 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.134 4.134 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.283 0.717 33 H 0.146 0.854 34 H 0.410 0.590 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 3.134 1.309 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.004 4.004 3 N -0.641 5.641 4 C -0.414 4.414 5 H 0.105 0.895 6 C -0.161 4.161 7 N -0.418 5.418 8 Si 0.734 3.266 9 H -0.183 1.183 10 H -0.195 1.195 11 H -0.204 1.204 12 S 2.656 3.344 13 O -0.929 6.929 14 O -0.997 6.997 15 C -0.753 4.753 16 C 0.012 3.988 17 C -0.171 4.171 18 C 0.374 3.626 19 O -0.404 6.404 20 O -0.328 6.328 21 C -0.050 4.050 22 C -0.178 4.178 23 C 0.071 3.929 24 C -0.134 4.134 25 C -0.191 4.191 26 C -0.191 4.191 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.268 0.732 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.356 3.211 1.834 10.997 hybrid contribution -1.008 0.601 0.430 1.250 sum -11.364 3.813 2.264 12.198 Atomic orbital electron populations 1.22294 0.98299 1.00764 1.01827 1.21173 0.92402 0.84278 1.02596 1.52901 1.77985 1.15237 1.17961 1.19121 0.98106 1.30550 0.93667 0.89540 1.25752 0.94254 0.98529 0.97593 1.69772 1.00066 1.35346 1.36664 0.86151 0.79261 0.81247 0.79935 1.18280 1.19456 1.20380 1.10783 0.76151 0.73833 0.73652 1.93401 1.66690 1.51323 1.81485 1.93310 1.80098 1.58363 1.67884 1.32820 1.28656 1.07803 1.06036 1.21077 0.91362 0.94772 0.91591 1.19062 0.99377 1.02974 0.95689 1.20989 0.77716 0.79637 0.84269 1.90892 1.58386 1.29455 1.61694 1.84562 1.40217 1.63876 1.44113 1.21458 0.97709 0.92349 0.93519 1.21115 0.97577 1.02188 0.96930 1.19936 0.90769 0.88933 0.93256 1.21288 1.03262 0.97861 0.90988 1.21780 0.97101 1.02355 0.97819 1.21726 1.00747 0.94413 1.02200 0.93608 0.92183 0.92877 0.90325 0.91437 0.90663 0.83607 0.73174 0.84824 0.85145 0.83699 0.93816 0.92080 0.91820 0.93635 0.92172 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.22 37.16 0.38 -2.46 16 2 C 0.12 2.41 6.36 -4.04 -0.03 2.38 16 3 N -0.82 -18.48 2.70 -59.91 -0.16 -18.64 16 4 C -0.27 -6.01 6.65 -15.06 -0.10 -6.11 16 5 H 0.09 1.79 7.58 -52.49 -0.40 1.40 16 6 C 0.06 1.35 3.63 -17.43 -0.06 1.29 16 7 N -0.78 -20.50 11.33 55.49 0.63 -19.87 16 8 Si 0.91 18.40 29.48 -169.99 -5.01 13.39 16 9 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 S 2.56 62.82 4.68 -107.50 -0.50 62.31 16 13 O -0.94 -25.03 12.11 -57.17 -0.69 -25.73 16 14 O -1.01 -27.17 15.70 -57.17 -0.90 -28.07 16 15 C -0.68 -14.25 5.58 -39.64 -0.22 -14.47 16 16 C 0.03 0.62 9.09 -39.17 -0.36 0.27 16 17 C -0.17 -2.89 5.87 -104.98 -0.62 -3.51 16 18 C 0.53 8.31 8.27 34.61 0.29 8.59 16 19 O -0.51 -9.56 17.13 -19.24 -0.33 -9.88 16 20 O -0.52 -5.78 12.68 -40.52 -0.51 -6.29 16 21 C -0.03 -0.47 9.62 -39.17 -0.38 -0.85 16 22 C -0.16 -2.46 8.70 -39.64 -0.34 -2.80 16 23 C 0.07 1.34 4.79 -104.53 -0.50 0.84 16 24 C -0.12 -2.15 2.32 -91.77 -0.21 -2.37 16 25 C -0.13 -2.08 8.52 37.16 0.32 -1.77 16 26 C -0.13 -2.24 9.03 37.16 0.34 -1.90 16 27 H 0.04 0.78 7.81 -51.93 -0.41 0.38 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 31 H 0.07 1.36 7.04 -51.93 -0.37 1.00 16 32 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.15 3.09 6.92 -52.48 -0.36 2.72 16 34 H 0.41 2.58 9.11 45.56 0.42 3.00 16 35 H 0.13 1.56 7.61 -52.48 -0.40 1.16 16 36 H 0.13 1.63 7.08 -52.49 -0.37 1.26 16 37 H 0.15 3.13 1.67 -51.61 -0.09 3.04 16 38 H 0.04 0.57 7.24 -51.93 -0.38 0.19 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 41 H 0.04 0.62 7.52 -51.93 -0.39 0.23 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -31.40 360.36 -8.37 -39.77 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.82 Total: 10.44 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.50 Total: -22.87 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.47 Total: -38.51 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: -2.43 Total: -69.97 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.01 Total: 13.39 kcal Atomic # 16 Polarization: 62.82 SS G_CDS: -0.50 Total: 62.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.40 -8.37 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273685792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.236 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds