Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46815 * 2 1 4 4 C 1.46494 * 119.99922 * 278.97510 * 3 2 1 5 5 C 1.50704 * 109.46976 * 275.00286 * 4 3 2 6 6 H 1.07998 * 120.00508 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99733 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00125 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99644 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47626 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47298 * 119.99808 * 9 7 5 12 12 H 1.48505 * 109.46739 * 239.99867 * 9 7 5 13 13 S 1.65606 * 119.99900 * 98.97852 * 3 2 1 14 14 O 1.42102 * 106.40315 * 344.02065 * 13 3 2 15 15 O 1.42097 * 106.39707 * 211.10170 * 13 3 2 16 16 C 1.76198 * 107.21740 * 97.56423 * 13 3 2 17 17 C 1.38383 * 119.93071 * 114.57282 * 16 13 3 18 18 C 1.38337 * 120.31133 * 179.97438 * 17 16 13 19 19 C 1.37967 * 120.14637 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.07617 * 180.02562 * 19 18 17 21 21 C 1.39608 * 119.84867 * 359.97438 * 19 18 17 22 22 C 1.47727 * 120.15066 * 180.02562 * 21 19 18 23 23 O 1.21475 * 120.00024 * 90.00065 * 22 21 19 24 24 O 1.34705 * 120.00224 * 270.00329 * 22 21 19 25 25 C 1.37934 * 119.92211 * 294.29479 * 16 13 3 26 26 C 1.50702 * 120.07722 * 0.02562 * 25 16 13 27 27 H 1.09004 * 109.47108 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47415 * 60.00373 * 1 2 3 29 29 H 1.09005 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.46955 * 239.99821 * 2 1 3 31 31 H 1.08999 * 109.46728 * 119.99912 * 2 1 3 32 32 H 1.09001 * 109.47466 * 34.99967 * 4 3 2 33 33 H 1.08999 * 109.47567 * 155.00588 * 4 3 2 34 34 H 0.97003 * 119.99880 * 180.02562 * 8 7 5 35 35 H 1.08005 * 119.84273 * 0.02562 * 17 16 13 36 36 H 1.07998 * 119.93231 * 179.97438 * 18 17 16 37 37 H 1.08991 * 109.47641 * 89.99902 * 20 19 18 38 38 H 1.09001 * 109.46552 * 209.99632 * 20 19 18 39 39 H 1.09004 * 109.46969 * 329.99076 * 20 19 18 40 40 H 0.96697 * 117.00249 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.46660 * 83.65681 * 26 25 16 42 42 H 1.08997 * 109.47241 * 203.65987 * 26 25 16 43 43 H 1.09001 * 109.46524 * 323.66089 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0758 2.1378 -1.2532 5 6 3.3688 1.8333 -1.9649 6 1 4.0771 1.1454 -1.5273 7 6 3.6480 2.4338 -3.1743 8 7 2.7858 3.2719 -3.7069 9 14 5.2504 2.0558 -4.0568 10 1 6.0414 1.0885 -3.2543 11 1 4.9556 1.4699 -5.3891 12 1 6.0286 3.3090 -4.2282 13 16 2.5053 2.0873 1.4166 14 8 1.9920 1.2778 2.4657 15 8 2.2185 3.4736 1.2932 16 6 4.2600 1.9471 1.4930 17 6 5.0461 3.0853 1.4513 18 6 6.4245 2.9844 1.5112 19 6 7.0248 1.7464 1.6136 20 6 8.5265 1.6383 1.6794 21 6 6.2379 0.5940 1.6573 22 6 6.8736 -0.7349 1.7674 23 8 7.0943 -1.2138 2.8618 24 8 7.2086 -1.4156 0.6544 25 6 4.8469 0.7035 1.6000 26 6 3.9891 -0.5346 1.6510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.2362 1.8541 -1.8878 33 1 2.0230 3.2047 -1.0363 34 1 2.9821 3.6940 -4.5579 35 1 4.5812 4.0569 1.3724 36 1 7.0321 3.8766 1.4778 37 1 8.8484 1.6776 2.7199 38 1 8.8424 0.6937 1.2367 39 1 8.9747 2.4655 1.1288 40 1 7.6219 -2.2812 0.7768 41 1 3.7283 -0.8378 0.6370 42 1 4.5395 -1.3381 2.1403 43 1 3.0791 -0.3231 2.2124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273713098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -139.497240 kcal Electronic energy + Delta-G solvation = -29555.449462 eV Core-core repulsion = 25499.806169 eV Total energy + Delta-G solvation = -4055.643293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73222 -38.88311 -36.98419 -36.18144 -36.14815 -35.36223 -33.82531 -32.77279 -32.24635 -30.01868 -28.17004 -27.02791 -26.66188 -24.36817 -23.21124 -21.81246 -21.44485 -21.03212 -18.74932 -18.09423 -17.52483 -17.16780 -16.56295 -16.40069 -15.90863 -15.50462 -15.11922 -14.76385 -14.39052 -14.25256 -14.00756 -13.69166 -13.48673 -13.41071 -13.22774 -12.92090 -12.87156 -12.37480 -12.16847 -12.09979 -11.95334 -11.81861 -11.71614 -11.64790 -11.58861 -11.45418 -11.23353 -11.08102 -10.95000 -10.77897 -10.55438 -10.40255 -10.30759 -10.03492 -9.79477 -9.06963 -8.77420 -8.53059 -8.11945 -6.14580 -4.20730 0.76260 1.02474 1.16538 1.95906 2.89837 3.21668 3.29565 3.30822 3.35829 3.64901 4.21128 4.34958 4.47990 4.62841 4.77118 4.89302 5.08012 5.17789 5.20495 5.31688 5.36129 5.36242 5.50093 5.60019 5.62572 5.67605 5.76127 5.77857 5.82484 6.02778 6.11902 6.14439 6.19518 6.25766 6.29135 6.32988 6.60702 6.62310 6.79035 7.28529 7.36625 7.56144 7.71914 7.82581 8.10264 8.84698 9.46036 10.93345 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.006400 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.281340 B = 4374.086257 C = 5659.628220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.977 5.977 4 C 0.244 3.756 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.888 3.112 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.283 1.283 13 S 2.693 3.307 14 O -0.974 6.974 15 O -0.957 6.957 16 C -0.667 4.667 17 C 0.019 3.981 18 C -0.148 4.148 19 C 0.003 3.997 20 C -0.127 4.127 21 C -0.143 4.143 22 C 0.544 3.456 23 O -0.507 6.507 24 O -0.503 6.503 25 C 0.071 3.929 26 C -0.187 4.187 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -6.201 8.537 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.817 5.817 4 C 0.122 3.878 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 S 2.782 3.218 14 O -0.964 6.964 15 O -0.947 6.947 16 C -0.751 4.751 17 C 0.000 4.000 18 C -0.167 4.167 19 C 0.002 3.998 20 C -0.184 4.184 21 C -0.145 4.145 22 C 0.386 3.614 23 O -0.395 6.395 24 O -0.314 6.314 25 C 0.069 3.931 26 C -0.243 4.243 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.268 0.732 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.690 -5.446 9.226 12.131 hybrid contribution 2.072 -0.908 -1.009 2.477 sum 7.762 -6.354 8.216 12.967 Atomic orbital electron populations 1.22184 0.96565 1.01529 1.02493 1.21450 0.94189 0.82834 1.02994 1.57351 1.76525 1.22911 1.24941 1.19267 0.97924 0.91621 0.78938 1.21588 1.03875 1.27074 1.05326 0.91890 1.24906 0.96791 0.94793 0.97137 1.69937 1.35256 1.28813 1.18715 0.86595 0.83809 0.78377 0.79700 1.19476 1.20902 1.20887 1.01929 0.73411 0.73533 0.72976 1.93462 1.78142 1.69794 1.55009 1.93538 1.83130 1.31737 1.86345 1.30983 1.28542 0.98123 1.17457 1.21126 0.93619 0.97955 0.87281 1.21007 0.94901 0.96745 1.04063 1.20007 0.95767 0.92000 0.91990 1.21004 0.90534 1.03599 1.03221 1.18714 0.93392 0.89853 1.12497 1.20886 0.73904 0.84964 0.81621 1.90905 1.51095 1.69004 1.28480 1.84781 1.73771 1.35761 1.37094 1.19270 0.91767 0.93997 0.88023 1.22061 1.02134 0.94891 1.05212 0.92791 0.91829 0.92134 0.89988 0.90338 0.93739 0.93085 0.92633 0.83244 0.84314 0.89925 0.91402 0.89944 0.73244 0.87935 0.90605 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.20 37.16 0.38 -2.10 16 2 C 0.11 1.81 4.76 -4.04 -0.02 1.79 16 3 N -0.98 -19.22 2.74 -115.67 -0.32 -19.54 16 4 C 0.24 5.77 5.43 -5.19 -0.03 5.74 16 5 C -0.54 -13.70 9.38 -34.44 -0.32 -14.02 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 S 2.69 52.47 5.09 -107.50 -0.55 51.92 16 14 O -0.97 -18.70 14.28 -57.17 -0.82 -19.52 16 15 O -0.96 -20.98 15.69 -57.17 -0.90 -21.87 16 16 C -0.67 -12.22 5.90 -39.64 -0.23 -12.46 16 17 C 0.02 0.33 9.54 -39.49 -0.38 -0.05 16 18 C -0.15 -2.16 9.69 -39.64 -0.38 -2.55 16 19 C 0.00 0.04 5.92 -104.21 -0.62 -0.57 16 20 C -0.13 -1.41 9.62 36.01 0.35 -1.06 16 21 C -0.14 -2.33 5.75 -104.98 -0.60 -2.94 16 22 C 0.54 8.02 4.61 34.61 0.16 8.18 16 23 O -0.51 -8.22 17.89 -19.25 -0.34 -8.56 16 24 O -0.50 -6.10 13.44 -40.51 -0.54 -6.65 16 25 C 0.07 1.23 5.91 -104.21 -0.62 0.61 16 26 C -0.19 -2.85 7.60 36.01 0.27 -2.58 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.08 1.13 4.16 -51.93 -0.22 0.92 16 32 H 0.04 1.09 7.78 -51.93 -0.40 0.68 16 33 H 0.05 1.32 7.03 -51.93 -0.37 0.96 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.15 2.38 7.32 -52.48 -0.38 2.00 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.74 7.08 -51.93 -0.37 0.37 16 39 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.41 2.72 9.11 45.56 0.42 3.13 16 41 H 0.10 1.47 6.48 -51.93 -0.34 1.13 16 42 H 0.08 1.05 6.86 -51.93 -0.36 0.69 16 43 H 0.12 1.84 4.05 -51.93 -0.21 1.63 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -33.18 365.56 -9.09 -42.27 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.71 Total: 5.26 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.14 Total: -20.33 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.42 Total: -43.55 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -2.60 Total: -56.60 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.55 Total: 51.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.18 -9.09 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273713098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.230 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds