Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46815 * 2 1 4 4 C 1.46494 * 119.99922 * 278.97510 * 3 2 1 5 5 C 1.50704 * 109.46976 * 275.00286 * 4 3 2 6 6 H 1.07998 * 120.00508 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99733 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00125 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99644 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47626 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47298 * 119.99808 * 9 7 5 12 12 H 1.48505 * 109.46739 * 239.99867 * 9 7 5 13 13 S 1.65606 * 119.99900 * 98.97852 * 3 2 1 14 14 O 1.42102 * 106.40315 * 344.02065 * 13 3 2 15 15 O 1.42097 * 106.39707 * 211.10170 * 13 3 2 16 16 C 1.76198 * 107.21740 * 97.56423 * 13 3 2 17 17 C 1.38383 * 119.93071 * 114.57282 * 16 13 3 18 18 C 1.38337 * 120.31133 * 179.97438 * 17 16 13 19 19 C 1.37967 * 120.14637 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.07617 * 180.02562 * 19 18 17 21 21 C 1.39608 * 119.84867 * 359.97438 * 19 18 17 22 22 C 1.47727 * 120.15066 * 180.02562 * 21 19 18 23 23 O 1.21475 * 120.00024 * 90.00065 * 22 21 19 24 24 O 1.34705 * 120.00224 * 270.00329 * 22 21 19 25 25 C 1.37934 * 119.92211 * 294.29479 * 16 13 3 26 26 C 1.50702 * 120.07722 * 0.02562 * 25 16 13 27 27 H 1.09004 * 109.47108 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47415 * 60.00373 * 1 2 3 29 29 H 1.09005 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.46955 * 239.99821 * 2 1 3 31 31 H 1.08999 * 109.46728 * 119.99912 * 2 1 3 32 32 H 1.09001 * 109.47466 * 34.99967 * 4 3 2 33 33 H 1.08999 * 109.47567 * 155.00588 * 4 3 2 34 34 H 0.97003 * 119.99880 * 180.02562 * 8 7 5 35 35 H 1.08005 * 119.84273 * 0.02562 * 17 16 13 36 36 H 1.07998 * 119.93231 * 179.97438 * 18 17 16 37 37 H 1.08991 * 109.47641 * 89.99902 * 20 19 18 38 38 H 1.09001 * 109.46552 * 209.99632 * 20 19 18 39 39 H 1.09004 * 109.46969 * 329.99076 * 20 19 18 40 40 H 0.96697 * 117.00249 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.46660 * 83.65681 * 26 25 16 42 42 H 1.08997 * 109.47241 * 203.65987 * 26 25 16 43 43 H 1.09001 * 109.46524 * 323.66089 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0758 2.1378 -1.2532 5 6 3.3688 1.8333 -1.9649 6 1 4.0771 1.1454 -1.5273 7 6 3.6480 2.4338 -3.1743 8 7 2.7858 3.2719 -3.7069 9 14 5.2504 2.0558 -4.0568 10 1 6.0414 1.0885 -3.2543 11 1 4.9556 1.4699 -5.3891 12 1 6.0286 3.3090 -4.2282 13 16 2.5053 2.0873 1.4166 14 8 1.9920 1.2778 2.4657 15 8 2.2185 3.4736 1.2932 16 6 4.2600 1.9471 1.4930 17 6 5.0461 3.0853 1.4513 18 6 6.4245 2.9844 1.5112 19 6 7.0248 1.7464 1.6136 20 6 8.5265 1.6383 1.6794 21 6 6.2379 0.5940 1.6573 22 6 6.8736 -0.7349 1.7674 23 8 7.0943 -1.2138 2.8618 24 8 7.2086 -1.4156 0.6544 25 6 4.8469 0.7035 1.6000 26 6 3.9891 -0.5346 1.6510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.2362 1.8541 -1.8878 33 1 2.0230 3.2047 -1.0363 34 1 2.9821 3.6940 -4.5579 35 1 4.5812 4.0569 1.3724 36 1 7.0321 3.8766 1.4778 37 1 8.8484 1.6776 2.7199 38 1 8.8424 0.6937 1.2367 39 1 8.9747 2.4655 1.1288 40 1 7.6219 -2.2812 0.7768 41 1 3.7283 -0.8378 0.6370 42 1 4.5395 -1.3381 2.1403 43 1 3.0791 -0.3231 2.2124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273713098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -161.761737 kcal Electronic energy + Delta-G solvation = -29556.414923 eV Core-core repulsion = 25499.806169 eV Total energy + Delta-G solvation = -4056.608754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85446 -40.03443 -38.53741 -37.76539 -37.19705 -36.96576 -34.98473 -34.67880 -33.45435 -31.53877 -29.24215 -28.49711 -28.16306 -25.51231 -24.94129 -23.28266 -22.67332 -22.19657 -20.05191 -19.33210 -18.87273 -18.71342 -18.29928 -17.82449 -17.20230 -17.02398 -16.40327 -16.26580 -15.77992 -15.46857 -15.38428 -14.89300 -14.82771 -14.63798 -14.39475 -14.34548 -14.12585 -13.64696 -13.62064 -13.38615 -13.33176 -13.29428 -13.14761 -12.99977 -12.78282 -12.75611 -12.73352 -12.62651 -12.60067 -12.24878 -12.11956 -11.92898 -11.70810 -11.61757 -11.48337 -10.57032 -10.28819 -9.99358 -9.75680 -8.15663 -6.27863 -0.61592 -0.34712 -0.06289 0.84816 1.40072 1.43247 1.54061 1.84169 1.93998 2.28781 2.43987 2.71399 3.16465 3.30944 3.38384 3.59074 3.70044 3.97759 4.05425 4.10473 4.18327 4.39540 4.40078 4.45494 4.48232 4.53303 4.58079 4.61227 4.71896 4.87086 4.94162 4.99501 5.02604 5.05245 5.16008 5.18152 5.29083 5.33725 5.43941 5.54462 5.62243 5.77354 5.93308 6.11829 6.80315 6.84203 7.42094 8.92489 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.006400 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.281340 B = 4374.086257 C = 5659.628220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.981 5.981 4 C 0.260 3.740 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.925 5.925 9 Si 0.948 3.052 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.281 1.281 13 S 2.699 3.301 14 O -0.975 6.975 15 O -0.991 6.991 16 C -0.686 4.686 17 C -0.003 4.003 18 C -0.146 4.146 19 C 0.003 3.997 20 C -0.127 4.127 21 C -0.163 4.163 22 C 0.555 3.445 23 O -0.526 6.526 24 O -0.500 6.500 25 C 0.055 3.945 26 C -0.187 4.187 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.433 0.567 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -7.676 8.658 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.820 5.820 4 C 0.137 3.863 5 C -0.576 4.576 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.773 3.227 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.207 1.207 13 S 2.792 3.208 14 O -0.966 6.966 15 O -0.981 6.981 16 C -0.774 4.774 17 C -0.022 4.022 18 C -0.164 4.164 19 C 0.003 3.997 20 C -0.183 4.183 21 C -0.165 4.165 22 C 0.398 3.602 23 O -0.416 6.416 24 O -0.314 6.314 25 C 0.054 3.946 26 C -0.243 4.243 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.193 0.807 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.296 0.704 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.095 -6.962 9.350 14.192 hybrid contribution 1.367 -0.490 -0.996 1.761 sum 9.461 -7.453 8.354 14.658 Atomic orbital electron populations 1.22193 0.95430 1.03470 1.01598 1.21761 0.95292 0.81183 1.04149 1.57230 1.77343 1.24002 1.23431 1.18802 0.96970 0.90453 0.80121 1.21822 1.04214 1.26425 1.05167 0.91546 1.25669 0.99742 0.94775 0.98074 1.70051 1.37126 1.30094 1.19254 0.85654 0.80197 0.78213 0.78620 1.18712 1.20536 1.20713 1.01444 0.74018 0.72658 0.72719 1.93451 1.78851 1.69520 1.54758 1.93488 1.84195 1.33732 1.86732 1.30674 1.27219 0.99421 1.20076 1.21356 0.95064 0.97602 0.88178 1.21419 0.94057 0.98330 1.02598 1.20542 0.97810 0.91412 0.89944 1.21128 0.87748 1.04724 1.04671 1.19064 0.93313 0.91517 1.12569 1.20536 0.73481 0.84486 0.81720 1.90903 1.52080 1.69348 1.29234 1.84718 1.73573 1.37274 1.35821 1.19510 0.92812 0.94048 0.88273 1.22084 1.01845 0.94679 1.05692 0.93262 0.93144 0.88781 0.89625 0.88303 0.95098 0.96063 0.92575 0.83431 0.80734 0.88292 0.91164 0.87646 0.70411 0.87220 0.89258 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.20 71.98 0.73 -4.11 16 2 C 0.10 3.23 4.76 86.38 0.41 3.64 16 3 N -0.98 -39.25 2.74 -519.86 -1.43 -40.68 16 4 C 0.26 12.68 5.43 85.64 0.46 13.14 16 5 C -0.54 -27.43 9.38 25.60 0.24 -27.19 16 6 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 7 C 0.02 0.90 5.46 84.66 0.46 1.37 16 8 N -0.93 -52.33 13.29 21.45 0.28 -52.04 16 9 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 S 2.70 107.64 5.09 -56.49 -0.29 107.35 16 14 O -0.98 -37.78 14.28 -128.00 -1.83 -39.60 16 15 O -0.99 -45.40 15.69 -128.00 -2.01 -47.41 16 16 C -0.69 -25.21 5.90 22.23 0.13 -25.08 16 17 C 0.00 -0.09 9.54 22.33 0.21 0.12 16 18 C -0.15 -3.94 9.69 22.23 0.22 -3.73 16 19 C 0.00 0.09 5.92 -19.60 -0.12 -0.02 16 20 C -0.13 -2.33 9.62 71.24 0.69 -1.64 16 21 C -0.16 -5.01 5.75 -20.10 -0.12 -5.12 16 22 C 0.55 14.98 4.61 70.33 0.32 15.31 16 23 O -0.53 -15.87 17.89 19.92 0.36 -15.52 16 24 O -0.50 -10.57 13.44 -56.15 -0.75 -11.33 16 25 C 0.06 1.86 5.91 -19.60 -0.12 1.75 16 26 C -0.19 -5.49 7.60 71.24 0.54 -4.95 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.57 7.81 -2.39 -0.02 1.55 16 29 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.09 2.67 8.13 -2.39 -0.02 2.65 16 31 H 0.10 2.76 4.16 -2.39 -0.01 2.75 16 32 H 0.03 1.57 7.78 -2.39 -0.02 1.55 16 33 H 0.02 1.16 7.03 -2.39 -0.02 1.15 16 34 H 0.27 14.19 8.31 -92.71 -0.77 13.41 16 35 H 0.15 4.86 7.32 -2.91 -0.02 4.83 16 36 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.28 7.08 -2.39 -0.02 1.26 16 39 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.43 4.29 9.11 -74.06 -0.67 3.61 16 41 H 0.11 3.00 6.48 -2.39 -0.02 2.98 16 42 H 0.09 2.32 6.86 -2.39 -0.02 2.30 16 43 H 0.11 3.43 4.05 -2.39 -0.01 3.42 16 Total: -1.00 -71.75 365.56 0.83 -70.92 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.39 Total: 21.20 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 4.08 Total: -36.52 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -1.14 Total: -92.72 kcal Atomic # 8 Polarization: -109.62 SS G_CDS: -4.23 Total: -113.86 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 107.64 SS G_CDS: -0.29 Total: 107.35 kcal Total: -71.75 0.83 -70.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273713098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.839 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds