Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 117.00147 * 2 1 4 4 C 1.38726 * 120.06728 * 359.97438 * 3 2 1 5 5 C 1.37951 * 119.89676 * 180.10115 * 4 3 2 6 6 C 1.39122 * 120.29089 * 0.02562 * 5 4 3 7 7 C 1.38348 * 119.79175 * 359.83690 * 6 5 4 8 8 C 1.38499 * 119.87719 * 0.20708 * 7 6 5 9 9 C 1.50788 * 121.41523 * 180.25154 * 7 6 5 10 10 H 1.08997 * 109.42775 * 102.29026 * 9 7 6 11 11 N 1.46497 * 109.43740 * 222.19928 * 9 7 6 12 12 S 1.65592 * 120.00163 * 216.04730 * 11 9 7 13 13 O 1.42103 * 104.27705 * 309.08868 * 12 11 9 14 14 O 1.42094 * 104.27641 * 181.23311 * 12 11 9 15 15 C 1.81400 * 104.44877 * 65.16266 * 12 11 9 16 16 C 1.53003 * 109.46977 * 175.27598 * 15 12 11 17 17 C 1.50702 * 109.47260 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99571 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00289 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99843 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99778 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46617 * 90.00081 * 21 19 17 23 23 H 1.48493 * 109.46738 * 209.99871 * 21 19 17 24 24 H 1.48495 * 109.46972 * 330.00019 * 21 19 17 25 25 C 1.53066 * 109.68868 * 342.27093 * 9 7 6 26 26 C 1.53406 * 108.30174 * 48.19606 * 25 9 7 27 27 O 1.35956 * 118.42696 * 179.73227 * 6 5 4 28 28 H 1.09003 * 109.46512 * 60.00714 * 1 2 3 29 29 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47324 * 300.00989 * 1 2 3 31 31 H 1.07998 * 120.04770 * 0.08008 * 4 3 2 32 32 H 1.07999 * 119.85054 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.86058 * 179.85611 * 8 7 6 34 34 H 0.97003 * 119.99477 * 36.04386 * 11 9 7 35 35 H 1.08999 * 109.46765 * 295.27218 * 15 12 11 36 36 H 1.08995 * 109.47352 * 55.27350 * 15 12 11 37 37 H 1.09000 * 109.47278 * 299.99942 * 16 15 12 38 38 H 1.08999 * 109.47312 * 60.00209 * 16 15 12 39 39 H 0.97007 * 120.00006 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.69694 * 167.89676 * 25 9 7 41 41 H 1.09001 * 109.69846 * 288.48541 * 25 9 7 42 42 H 1.08994 * 109.68761 * 175.52701 * 26 25 9 43 43 H 1.08996 * 109.71239 * 54.97580 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9222 3.6032 -0.0026 6 6 3.3113 3.6789 -0.0048 7 6 4.0630 2.5174 -0.0014 8 6 3.4297 1.2857 -0.0002 9 6 5.5704 2.5568 0.0021 10 1 5.9361 2.3489 1.0077 11 7 6.0866 1.5451 -0.9232 12 16 7.4767 0.7222 -0.5589 13 8 8.4133 1.7414 -0.2375 14 8 7.6797 -0.1339 -1.6746 15 6 7.0566 -0.2447 0.9173 16 6 8.2352 -1.1469 1.2884 17 6 7.8865 -1.9498 2.5152 18 1 6.9206 -1.8290 2.9830 19 6 8.8001 -2.8394 3.0396 20 7 8.4955 -3.5404 4.1098 21 14 10.4705 -3.0488 2.2299 22 1 11.4341 -2.0901 2.8280 23 1 10.9543 -4.4361 2.4451 24 1 10.3508 -2.7866 0.7732 25 6 6.0511 3.9419 -0.4375 26 6 5.2696 4.9972 0.3555 27 8 3.8925 4.9079 -0.0124 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8898 31 1 0.2136 2.3216 0.0004 32 1 1.3343 4.5092 -0.0026 33 1 4.0168 0.3792 0.0001 34 1 5.6141 1.3573 -1.7492 35 1 6.8415 0.4310 1.7451 36 1 6.1796 -0.8586 0.7121 37 1 8.4504 -1.8226 0.4606 38 1 9.1122 -0.5330 1.4937 39 1 9.1382 -4.1665 4.4786 40 1 7.1169 4.0430 -0.2326 41 1 5.8675 4.0731 -1.5039 42 1 5.6495 5.9908 0.1179 43 1 5.3773 4.8086 1.4236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274289058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -123.381084 kcal Electronic energy + Delta-G solvation = -28063.918504 eV Core-core repulsion = 24008.974060 eV Total energy + Delta-G solvation = -4054.944444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10421 -39.45250 -36.90206 -36.70131 -36.08589 -35.60305 -33.97512 -31.56939 -31.50655 -30.85682 -29.90175 -27.38849 -26.00960 -25.19009 -23.55339 -22.70293 -21.38117 -20.35896 -19.18257 -18.36736 -17.94072 -17.59664 -17.02570 -16.88857 -16.26700 -15.91147 -15.63864 -15.39159 -15.25574 -14.96176 -14.34351 -14.31168 -13.92254 -13.76467 -13.64641 -13.45404 -13.25105 -12.82130 -12.67897 -12.36197 -12.05566 -11.92106 -11.81585 -11.78841 -11.69776 -11.47460 -11.40576 -11.26082 -11.22511 -10.73434 -10.48024 -10.45960 -10.20322 -9.95033 -9.55701 -9.29751 -9.08365 -8.66948 -7.92300 -6.16986 -4.18417 0.56329 0.97062 1.24414 2.87659 3.04726 3.16491 3.25800 3.33451 3.37603 3.49449 4.02066 4.26102 4.35226 4.44883 4.49718 4.52730 4.64482 4.69635 4.82722 4.89977 4.91966 4.98298 5.12701 5.14901 5.24879 5.28919 5.32894 5.36696 5.48804 5.54287 5.67778 5.75550 5.80428 5.95195 6.08903 6.16245 6.25503 6.31869 6.78852 6.88987 6.95962 7.08936 7.30493 7.53631 8.35894 8.84392 9.42509 10.95365 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.003626 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.332902 B = 7719.664856 C = 9146.695929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.096 3.904 4 C -0.169 4.169 5 C -0.113 4.113 6 C 0.109 3.891 7 C -0.132 4.132 8 C -0.102 4.102 9 C 0.202 3.798 10 H 0.101 0.899 11 N -1.116 6.116 12 S 2.587 3.413 13 O -0.964 6.964 14 O -0.962 6.962 15 C -0.584 4.584 16 C -0.006 4.006 17 C -0.520 4.520 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.868 3.132 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.177 4.177 26 C 0.063 3.937 27 O -0.317 6.317 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 15.981 -9.059 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.051 3.949 4 C -0.188 4.188 5 C -0.132 4.132 6 C 0.064 3.936 7 C -0.134 4.134 8 C -0.121 4.121 9 C 0.094 3.906 10 H 0.119 0.881 11 N -0.872 5.872 12 S 2.684 3.316 13 O -0.954 6.954 14 O -0.953 6.953 15 C -0.717 4.717 16 C -0.045 4.045 17 C -0.559 4.559 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.694 3.306 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.216 4.216 26 C -0.013 4.013 27 O -0.231 6.231 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.251 0.749 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.504 15.939 -9.336 23.486 hybrid contribution 0.033 -0.531 -0.068 0.537 sum -14.471 15.408 -9.404 23.135 Atomic orbital electron populations 1.23048 0.78531 1.04051 1.01090 1.86133 1.21178 1.26421 1.89056 1.18821 0.92141 0.84396 0.99584 1.21053 1.00073 0.91462 1.06165 1.20329 0.91414 0.97986 1.03445 1.18535 0.91747 0.83663 0.99689 1.19706 0.95116 0.92239 1.06381 1.20193 0.91476 0.97897 1.02501 1.19413 0.89143 0.88514 0.93497 0.88108 1.55912 1.47377 1.52451 1.31427 1.05752 0.73402 0.74978 0.77470 1.93550 1.59534 1.56379 1.85907 1.93572 1.83946 1.68085 1.49649 1.30330 1.10882 1.12951 1.17585 1.19405 0.90848 0.94635 0.99639 1.20843 1.03424 1.22042 1.09548 0.90359 1.24977 0.98453 0.95021 0.94588 1.69881 1.35980 1.25680 1.21741 0.86940 0.84589 0.78050 0.80983 1.19683 1.20734 1.18574 1.22807 1.02796 0.93949 1.02091 1.23018 0.78470 1.00665 0.99113 1.85993 1.26711 1.26163 1.84262 0.92812 0.88189 0.92712 0.84829 0.84834 0.84363 0.74924 0.85721 0.85319 0.94748 0.95502 0.92374 0.87785 0.89637 0.87002 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.62 10.50 -19.66 -0.21 -3.83 16 3 C 0.10 1.10 6.68 -39.29 -0.26 0.84 16 4 C -0.17 -1.61 9.03 -39.51 -0.36 -1.96 16 5 C -0.11 -1.11 9.93 -39.36 -0.39 -1.50 16 6 C 0.11 1.22 6.47 -39.21 -0.25 0.96 16 7 C -0.13 -1.51 5.49 -104.44 -0.57 -2.09 16 8 C -0.10 -1.23 9.15 -39.38 -0.36 -1.59 16 9 C 0.20 2.30 2.68 -69.01 -0.19 2.12 16 10 H 0.10 1.09 7.27 -51.93 -0.38 0.71 16 11 N -1.12 -13.72 4.60 -5.82 -0.03 -13.74 16 12 S 2.59 42.31 5.37 -107.50 -0.58 41.73 16 13 O -0.96 -17.65 17.48 -57.54 -1.01 -18.66 16 14 O -0.96 -18.65 18.08 -57.54 -1.04 -19.69 16 15 C -0.58 -10.43 5.87 37.16 0.22 -10.21 16 16 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 17 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 21 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 25 C -0.18 -1.79 5.80 -26.49 -0.15 -1.94 16 26 C 0.06 0.54 7.03 37.37 0.26 0.80 16 27 O -0.32 -3.36 10.27 -19.60 -0.20 -3.56 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 0.92 6.31 -52.49 -0.33 0.59 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.14 1.67 7.70 -52.48 -0.40 1.26 16 34 H 0.42 4.50 8.72 -34.47 -0.30 4.20 16 35 H 0.12 1.99 7.60 -51.92 -0.39 1.60 16 36 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 37 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 38 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 1.08 7.81 -51.93 -0.41 0.68 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -35.68 366.18 -8.94 -44.62 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.90 Total: 3.48 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -1.61 Total: -26.39 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.75 Total: -39.93 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.45 Total: -45.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 42.31 SS G_CDS: -0.58 Total: 41.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.68 -8.94 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274289058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.757 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds