Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 S 1.65605 * 119.99928 * 264.99900 * 12 2 1 14 14 O 1.42100 * 106.39989 * 178.54255 * 13 12 2 15 15 O 1.42093 * 106.40417 * 311.46301 * 13 12 2 16 16 C 1.76199 * 107.21621 * 65.00239 * 13 12 2 17 17 C 1.38230 * 120.00475 * 269.72607 * 16 13 12 18 18 C 1.38230 * 120.00523 * 179.74330 * 17 16 13 19 19 C 1.38239 * 119.99926 * 0.53214 * 18 17 16 20 20 C 1.50697 * 120.00116 * 179.76704 * 19 18 17 21 21 C 1.52999 * 109.62914 * 269.97352 * 20 19 18 22 22 O 1.43756 * 109.62891 * 149.58145 * 20 19 18 23 23 C 1.44583 * 104.91883 * 215.70550 * 22 20 19 24 24 C 1.54914 * 101.63334 * 36.27216 * 23 22 20 25 25 O 1.43368 * 109.63291 * 30.37263 * 20 19 18 26 26 C 1.38241 * 119.99728 * 359.74301 * 19 18 17 27 27 C 1.38235 * 120.00047 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00201 * 85.00286 * 12 2 1 33 33 H 1.08007 * 119.99532 * 359.97438 * 17 16 13 34 34 H 1.07999 * 120.00456 * 180.29229 * 18 17 16 35 35 H 1.08998 * 109.46993 * 59.99779 * 21 20 19 36 36 H 1.08991 * 109.47141 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47089 * 300.00333 * 21 20 19 38 38 H 1.08995 * 111.08995 * 278.16328 * 23 22 20 39 39 H 1.08997 * 110.97898 * 154.33256 * 23 22 20 40 40 H 1.09005 * 110.69290 * 205.95497 * 24 23 22 41 41 H 1.09007 * 110.69573 * 82.75483 * 24 23 22 42 42 H 1.07995 * 120.00106 * 180.02562 * 26 19 18 43 43 H 1.07996 * 119.99926 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2436 1.2442 2.1157 16 6 0.9275 0.9146 3.1474 17 6 0.5544 2.1709 2.7078 18 6 -0.6131 2.7473 3.1720 19 6 -1.4020 2.0719 4.0844 20 6 -2.6721 2.7024 4.5945 21 6 -2.3707 3.5211 5.8514 22 8 -3.6300 1.6763 4.9046 23 6 -4.9109 2.2412 4.5432 24 6 -4.5454 3.0620 3.2812 25 8 -3.2254 3.5564 3.5845 26 6 -1.0261 0.8179 4.5284 27 6 0.1385 0.2391 4.0597 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.1110 -1.6562 1.1948 33 1 1.1734 2.7007 1.9987 34 1 -0.9069 3.7269 2.8250 35 1 -1.6496 4.3025 5.6118 36 1 -3.2910 3.9755 6.2184 37 1 -1.9569 2.8680 6.6198 38 1 -5.2909 2.8887 5.3333 39 1 -5.6296 1.4574 4.3043 40 1 -5.2437 3.8876 3.1431 41 1 -4.5239 2.4226 2.3987 42 1 -1.6426 0.2900 5.2408 43 1 0.4319 -0.7408 4.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274313162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -133.664871 kcal Electronic energy + Delta-G solvation = -28446.177839 eV Core-core repulsion = 24390.787456 eV Total energy + Delta-G solvation = -4055.390383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06699 -38.80830 -36.69045 -35.43586 -35.36092 -35.27806 -33.21338 -32.17718 -30.90956 -29.88243 -28.76102 -28.28559 -25.24077 -24.13611 -23.74909 -22.43258 -21.16899 -20.92499 -18.97853 -17.96575 -17.57119 -17.29543 -16.93564 -16.17026 -15.91072 -15.46022 -15.29560 -14.87107 -14.51674 -14.33214 -14.21272 -13.85262 -13.60779 -13.38822 -13.16189 -13.02407 -12.77887 -12.65479 -12.51476 -12.28090 -12.16448 -11.72668 -11.68360 -11.54677 -11.47730 -11.15004 -11.08573 -10.96125 -10.71044 -10.54106 -10.47464 -10.33406 -10.08910 -9.97781 -9.25399 -9.11582 -8.86431 -8.62281 -8.27846 -6.12089 -4.19172 0.79928 1.11285 1.45682 3.04304 3.28659 3.33039 3.35502 3.40958 3.57557 3.84410 4.22010 4.31458 4.37569 4.40038 4.57179 4.74541 4.80895 4.84046 5.02103 5.08136 5.13234 5.20850 5.28972 5.31546 5.40818 5.46942 5.55760 5.67711 5.77807 5.79969 6.06584 6.22512 6.28469 6.35491 6.38579 6.77724 6.82862 6.85643 6.93791 7.01563 7.57165 7.67176 7.86603 8.01330 8.27158 8.83037 9.46538 10.94044 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.003612 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.939867 B = 7750.553622 C = 9133.255225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.268 3.732 3 H 0.051 0.949 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.098 6.098 13 S 2.688 3.312 14 O -0.982 6.982 15 O -0.960 6.960 16 C -0.658 4.658 17 C -0.014 4.014 18 C -0.111 4.111 19 C -0.058 4.058 20 C 0.296 3.704 21 C -0.164 4.164 22 O -0.365 6.365 23 C 0.016 3.984 24 C 0.019 3.981 25 O -0.370 6.370 26 C -0.117 4.117 27 C -0.024 4.024 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.093 0.907 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 4.541 14.825 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.859 5.859 13 S 2.776 3.224 14 O -0.972 6.972 15 O -0.950 6.950 16 C -0.743 4.743 17 C -0.033 4.033 18 C -0.130 4.130 19 C -0.059 4.059 20 C 0.219 3.781 21 C -0.222 4.222 22 O -0.285 6.285 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.291 6.291 26 C -0.136 4.136 27 C -0.044 4.044 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.428 4.945 15.059 19.540 hybrid contribution -0.815 -0.661 -0.931 1.403 sum -12.244 4.284 14.127 19.179 Atomic orbital electron populations 1.22302 0.98569 0.99991 1.01006 1.18624 0.90759 0.93109 0.81086 0.93099 1.21184 1.31940 1.13183 0.89813 0.91758 1.24904 0.94860 0.95020 0.99045 1.69852 1.36215 1.22581 1.24014 0.86501 0.79322 0.79556 0.81698 1.20208 1.21198 1.20080 1.55515 1.83834 1.19100 1.27473 1.01919 0.73980 0.73665 0.72830 1.93517 1.81430 1.61925 1.60324 1.93570 1.63352 1.56631 1.81486 1.31276 1.24825 1.06942 1.11262 1.20975 0.94880 0.92412 0.95012 1.20998 0.94322 1.00928 0.96764 1.20010 0.94491 0.94911 0.96509 1.21938 0.87079 0.81608 0.87467 1.22337 1.03143 1.00716 0.95967 1.89236 1.15726 1.38227 1.85341 1.24372 0.87194 0.98517 0.95952 1.24244 0.84105 0.99140 0.98215 1.88917 1.30067 1.52138 1.57971 1.20960 0.96841 0.94659 1.01159 1.20849 0.92295 0.98754 0.92467 0.94794 0.96663 0.88839 0.92546 0.75656 0.83766 0.84659 0.90230 0.91379 0.90243 0.90575 0.87127 0.88019 0.90136 0.84946 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.29 37.16 0.35 -3.28 16 2 C 0.27 6.44 2.89 -69.08 -0.20 6.24 16 3 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 4 C -0.52 -13.73 8.76 -34.44 -0.30 -14.03 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -1.10 -22.34 5.46 -5.88 -0.03 -22.37 16 13 S 2.69 51.78 5.72 -107.50 -0.61 51.17 16 14 O -0.98 -19.51 17.28 -57.17 -0.99 -20.49 16 15 O -0.96 -21.28 16.61 -57.17 -0.95 -22.23 16 16 C -0.66 -11.32 5.06 -39.58 -0.20 -11.52 16 17 C -0.01 -0.23 8.60 -39.59 -0.34 -0.57 16 18 C -0.11 -1.67 9.35 -39.58 -0.37 -2.04 16 19 C -0.06 -0.82 4.95 -104.62 -0.52 -1.34 16 20 C 0.30 3.49 1.24 -27.89 -0.03 3.46 16 21 C -0.16 -1.56 9.18 37.16 0.34 -1.22 16 22 O -0.36 -4.13 9.99 -59.05 -0.59 -4.72 16 23 C 0.02 0.12 7.91 38.17 0.30 0.42 16 24 C 0.02 0.17 8.07 38.17 0.31 0.48 16 25 O -0.37 -4.42 9.87 -59.05 -0.58 -5.00 16 26 C -0.12 -1.64 9.35 -39.58 -0.37 -2.01 16 27 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.30 6.18 -51.93 -0.32 -0.02 16 30 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.41 7.54 8.83 -34.47 -0.30 7.24 16 33 H 0.14 2.43 7.61 -52.48 -0.40 2.03 16 34 H 0.14 1.84 7.50 -52.49 -0.39 1.44 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.13 1.60 7.50 -52.49 -0.39 1.21 16 43 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -32.57 366.69 -9.98 -42.55 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.84 Total: 8.09 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -1.51 Total: -24.55 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.60 Total: -45.98 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -3.11 Total: -52.45 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.61 Total: 51.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.57 -9.98 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274313162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.113 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds