Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 S 1.65605 * 119.99928 * 264.99900 * 12 2 1 14 14 O 1.42100 * 106.39989 * 178.54255 * 13 12 2 15 15 O 1.42093 * 106.40417 * 311.46301 * 13 12 2 16 16 C 1.76199 * 107.21621 * 65.00239 * 13 12 2 17 17 C 1.38230 * 120.00475 * 269.72607 * 16 13 12 18 18 C 1.38230 * 120.00523 * 179.74330 * 17 16 13 19 19 C 1.38239 * 119.99926 * 0.53214 * 18 17 16 20 20 C 1.50697 * 120.00116 * 179.76704 * 19 18 17 21 21 C 1.52999 * 109.62914 * 269.97352 * 20 19 18 22 22 O 1.43756 * 109.62891 * 149.58145 * 20 19 18 23 23 C 1.44583 * 104.91883 * 215.70550 * 22 20 19 24 24 C 1.54914 * 101.63334 * 36.27216 * 23 22 20 25 25 O 1.43368 * 109.63291 * 30.37263 * 20 19 18 26 26 C 1.38241 * 119.99728 * 359.74301 * 19 18 17 27 27 C 1.38235 * 120.00047 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00201 * 85.00286 * 12 2 1 33 33 H 1.08007 * 119.99532 * 359.97438 * 17 16 13 34 34 H 1.07999 * 120.00456 * 180.29229 * 18 17 16 35 35 H 1.08998 * 109.46993 * 59.99779 * 21 20 19 36 36 H 1.08991 * 109.47141 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47089 * 300.00333 * 21 20 19 38 38 H 1.08995 * 111.08995 * 278.16328 * 23 22 20 39 39 H 1.08997 * 110.97898 * 154.33256 * 23 22 20 40 40 H 1.09005 * 110.69290 * 205.95497 * 24 23 22 41 41 H 1.09007 * 110.69573 * 82.75483 * 24 23 22 42 42 H 1.07995 * 120.00106 * 180.02562 * 26 19 18 43 43 H 1.07996 * 119.99926 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2436 1.2442 2.1157 16 6 0.9275 0.9146 3.1474 17 6 0.5544 2.1709 2.7078 18 6 -0.6131 2.7473 3.1720 19 6 -1.4020 2.0719 4.0844 20 6 -2.6721 2.7024 4.5945 21 6 -2.3707 3.5211 5.8514 22 8 -3.6300 1.6763 4.9046 23 6 -4.9109 2.2412 4.5432 24 6 -4.5454 3.0620 3.2812 25 8 -3.2254 3.5564 3.5845 26 6 -1.0261 0.8179 4.5284 27 6 0.1385 0.2391 4.0597 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.1110 -1.6562 1.1948 33 1 1.1734 2.7007 1.9987 34 1 -0.9069 3.7269 2.8250 35 1 -1.6496 4.3025 5.6118 36 1 -3.2910 3.9755 6.2184 37 1 -1.9569 2.8680 6.6198 38 1 -5.2909 2.8887 5.3333 39 1 -5.6296 1.4574 4.3043 40 1 -5.2437 3.8876 3.1431 41 1 -4.5239 2.4226 2.3987 42 1 -1.6426 0.2900 5.2408 43 1 0.4319 -0.7408 4.4062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274313162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -156.623171 kcal Electronic energy + Delta-G solvation = -28447.173386 eV Core-core repulsion = 24390.787456 eV Total energy + Delta-G solvation = -4056.385929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89833 -39.93577 -38.33196 -37.26916 -36.92973 -36.15618 -34.19673 -34.09077 -32.10850 -30.86791 -30.12240 -29.44481 -27.24186 -25.18660 -24.56796 -23.47660 -22.82782 -22.15696 -20.51792 -19.27654 -19.04382 -18.38810 -17.98722 -17.68941 -17.17881 -16.87512 -16.55583 -16.21235 -15.73392 -15.50152 -15.35816 -15.11702 -14.75103 -14.54947 -14.47850 -14.06761 -14.00650 -13.94658 -13.83566 -13.53071 -13.27162 -13.21437 -13.13422 -13.10319 -12.96190 -12.79473 -12.47302 -12.38607 -12.27011 -12.22796 -12.00629 -11.87429 -11.17260 -11.14710 -10.86596 -10.59135 -10.37150 -10.09246 -10.05380 -8.13741 -6.27824 -0.58419 -0.29574 0.25522 1.46360 1.47958 1.55136 2.07414 2.32526 2.38498 2.46362 2.73190 2.81380 3.16005 3.35578 3.48326 3.68055 3.81547 3.87900 3.99110 4.12154 4.16666 4.30533 4.38663 4.48416 4.52809 4.58579 4.65268 4.69291 4.74339 4.89240 4.89399 4.92582 5.01393 5.04248 5.08206 5.11115 5.13531 5.27012 5.58397 5.74580 5.75422 6.02867 6.03035 6.11729 6.41181 6.81843 7.41333 8.91479 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.003612 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.939867 B = 7750.553622 C = 9133.255225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.066 0.934 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.275 1.275 12 N -1.099 6.099 13 S 2.703 3.297 14 O -0.987 6.987 15 O -0.996 6.996 16 C -0.668 4.668 17 C -0.031 4.031 18 C -0.115 4.115 19 C -0.056 4.056 20 C 0.294 3.706 21 C -0.161 4.161 22 O -0.381 6.381 23 C 0.015 3.985 24 C 0.010 3.990 25 O -0.389 6.389 26 C -0.113 4.113 27 C -0.028 4.028 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.266 0.734 32 H 0.418 0.582 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.157 0.843 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 4.093 16.022 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.584 4.584 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.860 5.860 13 S 2.795 3.205 14 O -0.977 6.977 15 O -0.986 6.986 16 C -0.756 4.756 17 C -0.051 4.051 18 C -0.134 4.134 19 C -0.057 4.057 20 C 0.217 3.783 21 C -0.219 4.219 22 O -0.302 6.302 23 C -0.060 4.060 24 C -0.066 4.066 25 O -0.311 6.311 26 C -0.132 4.132 27 C -0.047 4.047 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.175 0.825 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.349 4.463 16.249 21.498 hybrid contribution -0.320 -0.473 -1.222 1.349 sum -13.669 3.990 15.027 20.702 Atomic orbital electron populations 1.22101 0.97632 1.00090 1.00667 1.18326 0.91363 0.91748 0.81737 0.95922 1.21567 1.32227 1.13526 0.91051 0.91594 1.25668 0.95023 0.95691 1.01787 1.69974 1.36949 1.23604 1.24601 0.85552 0.78599 0.78814 0.78313 1.19264 1.20825 1.20049 1.55317 1.83932 1.19561 1.27146 1.01177 0.74221 0.72884 0.72219 1.93499 1.82068 1.62192 1.59988 1.93520 1.65439 1.57608 1.82048 1.30796 1.24365 1.07453 1.13034 1.20990 0.95811 0.92654 0.95616 1.21115 0.93757 1.01467 0.97015 1.20434 0.95322 0.94759 0.95196 1.21996 0.86262 0.81874 0.88153 1.22331 1.04123 1.00480 0.94935 1.89201 1.17010 1.38603 1.85380 1.24640 0.86102 0.99329 0.95956 1.24484 0.83384 1.00274 0.98409 1.88905 1.31643 1.52286 1.58252 1.21238 0.96313 0.94620 1.01005 1.21120 0.92414 0.99357 0.91788 0.94303 0.94912 0.91187 0.92502 0.74698 0.84969 0.83697 0.90453 0.89483 0.89728 0.88302 0.85209 0.85361 0.91250 0.82546 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.70 9.29 71.98 0.67 -6.03 16 2 C 0.27 13.42 2.89 44.25 0.13 13.55 16 3 H 0.02 1.25 7.50 -2.39 -0.02 1.23 16 4 C -0.54 -28.99 8.76 25.60 0.22 -28.76 16 5 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -50.57 11.32 21.45 0.24 -50.33 16 8 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 N -1.10 -45.33 5.46 -172.52 -0.94 -46.27 16 13 S 2.70 105.87 5.72 -56.49 -0.32 105.55 16 14 O -0.99 -38.99 17.28 -128.00 -2.21 -41.21 16 15 O -1.00 -45.83 16.61 -128.00 -2.13 -47.95 16 16 C -0.67 -22.97 5.06 22.27 0.11 -22.85 16 17 C -0.03 -1.07 8.60 22.27 0.19 -0.88 16 18 C -0.11 -3.40 9.35 22.27 0.21 -3.19 16 19 C -0.06 -1.49 4.95 -19.86 -0.10 -1.59 16 20 C 0.29 6.29 1.24 29.85 0.04 6.32 16 21 C -0.16 -2.65 9.18 71.98 0.66 -1.99 16 22 O -0.38 -7.52 9.99 -126.20 -1.26 -8.78 16 23 C 0.02 0.18 7.91 72.64 0.57 0.76 16 24 C 0.01 0.15 8.07 72.64 0.59 0.74 16 25 O -0.39 -8.57 9.87 -126.20 -1.25 -9.82 16 26 C -0.11 -2.93 9.35 22.27 0.21 -2.72 16 27 C -0.03 -0.81 9.52 22.27 0.21 -0.59 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.34 6.18 -2.39 -0.01 1.33 16 30 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 31 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 32 H 0.42 15.45 8.83 -96.74 -0.85 14.60 16 33 H 0.13 4.74 7.61 -2.91 -0.02 4.72 16 34 H 0.15 3.91 7.50 -2.91 -0.02 3.89 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 42 H 0.16 3.30 7.50 -2.91 -0.02 3.27 16 43 H 0.16 3.96 7.62 -2.91 -0.02 3.94 16 Total: -1.00 -69.64 366.69 -1.50 -71.14 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.18 Total: 29.09 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 4.16 Total: -45.81 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -0.70 Total: -96.60 kcal Atomic # 8 Polarization: -100.91 SS G_CDS: -6.85 Total: -107.76 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 105.87 SS G_CDS: -0.32 Total: 105.55 kcal Total: -69.64 -1.50 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274313162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.484 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds