Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 C 1.50696 * 109.47640 * 120.00123 * 2 1 3 5 5 H 1.07999 * 120.00109 * 119.99961 * 4 2 1 6 6 C 1.37882 * 119.99881 * 300.00230 * 4 2 1 7 7 N 1.31513 * 120.00056 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99859 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47024 * 90.00060 * 8 6 4 10 10 H 1.48495 * 109.46891 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.47176 * 329.99975 * 8 6 4 12 12 N 1.46508 * 109.47194 * 240.00198 * 2 1 3 13 13 S 1.65595 * 119.99876 * 94.99693 * 12 2 1 14 14 O 1.42105 * 106.40149 * 178.54167 * 13 12 2 15 15 O 1.42098 * 106.40317 * 311.46040 * 13 12 2 16 16 C 1.76204 * 107.21987 * 65.00402 * 13 12 2 17 17 C 1.38233 * 119.99533 * 269.72685 * 16 13 12 18 18 C 1.38236 * 120.00126 * 179.74618 * 17 16 13 19 19 C 1.38243 * 119.99535 * 0.52483 * 18 17 16 20 20 C 1.50699 * 119.99984 * 179.77177 * 19 18 17 21 21 C 1.53001 * 109.62808 * 269.97879 * 20 19 18 22 22 O 1.43751 * 109.63111 * 149.58112 * 20 19 18 23 23 C 1.44585 * 104.92236 * 215.70712 * 22 20 19 24 24 C 1.54916 * 101.63160 * 36.27256 * 23 22 20 25 25 O 1.43373 * 109.63096 * 30.37312 * 20 19 18 26 26 C 1.38237 * 120.00105 * 359.74817 * 19 18 17 27 27 C 1.38226 * 120.00179 * 89.99674 * 16 13 12 28 28 H 1.08996 * 109.47096 * 299.99670 * 1 2 3 29 29 H 1.08998 * 109.47567 * 60.00090 * 1 2 3 30 30 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00138 * 180.02562 * 7 6 4 32 32 H 0.96997 * 120.00091 * 274.99665 * 12 2 1 33 33 H 1.08007 * 120.00465 * 359.97438 * 17 16 13 34 34 H 1.08002 * 120.00707 * 180.29458 * 18 17 16 35 35 H 1.08998 * 109.47165 * 59.99942 * 21 20 19 36 36 H 1.09000 * 109.47324 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.46499 * 299.99745 * 21 20 19 38 38 H 1.08996 * 111.08641 * 278.16609 * 23 22 20 39 39 H 1.08999 * 110.97742 * 154.33438 * 23 22 20 40 40 H 1.08996 * 110.69385 * 205.95998 * 24 23 22 41 41 H 1.08995 * 110.69528 * 82.75662 * 24 23 22 42 42 H 1.07995 * 120.00200 * 180.02562 * 26 19 18 43 43 H 1.08001 * 120.00418 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8019 0.8744 2.6993 10 1 0.9772 1.9952 3.9070 11 1 0.8491 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1963 13 16 2.4121 0.1772 -2.5505 14 8 2.8776 -0.7634 -3.5086 15 8 1.3246 1.0593 -2.7921 16 6 3.7928 1.1911 -2.1372 17 6 3.5905 2.4638 -1.6373 18 6 4.6734 3.2574 -1.3081 19 6 5.9589 2.7820 -1.4891 20 6 7.1397 3.6490 -1.1351 21 6 7.5517 4.4784 -2.3529 22 8 8.2392 2.8213 -0.7198 23 6 8.8972 3.5732 0.3252 24 6 7.6932 4.2425 1.0339 25 8 6.7888 4.5224 -0.0536 26 6 6.1612 1.5113 -1.9944 27 6 5.0781 0.7158 -2.3182 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9028 -0.5285 4.4375 32 1 2.1111 -1.6561 -1.1950 33 1 2.5862 2.8370 -1.5003 34 1 4.5154 4.2500 -0.9130 35 1 6.7185 5.1100 -2.6611 36 1 8.4060 5.1040 -2.0942 37 1 7.8245 3.8118 -3.1710 38 1 9.5689 4.3222 -0.0941 39 1 9.4314 2.9102 1.0058 40 1 8.0004 5.1650 1.5265 41 1 7.2367 3.5570 1.7478 42 1 7.1654 1.1398 -2.1354 43 1 5.2362 -0.2769 -2.7133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274313163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = -125.561989 kcal Electronic energy + Delta-G solvation = -28581.512602 eV Core-core repulsion = 24526.473587 eV Total energy + Delta-G solvation = -4055.039015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04434 -38.81085 -36.85962 -35.70205 -35.42737 -35.33303 -33.21513 -32.24821 -30.93636 -29.88878 -29.21998 -28.73605 -25.14333 -24.16591 -23.73412 -22.47057 -21.17131 -21.06942 -19.16292 -18.00537 -17.69193 -17.32576 -16.87935 -16.20815 -16.09812 -15.74459 -15.39526 -15.01511 -14.51582 -14.36579 -14.23346 -13.85145 -13.62970 -13.41751 -13.17221 -13.08314 -13.02139 -12.78605 -12.51204 -12.43562 -12.24796 -12.19755 -11.85221 -11.68863 -11.65547 -11.60319 -11.25351 -11.12678 -10.75475 -10.61717 -10.45841 -10.22277 -9.98519 -9.59849 -9.39009 -9.18765 -8.89791 -8.85341 -8.51095 -6.21499 -4.23420 0.73425 1.01212 1.43413 3.07050 3.20138 3.29903 3.31604 3.36165 3.54687 3.72076 4.19115 4.25861 4.28092 4.41139 4.60603 4.66461 4.84161 4.85452 5.00753 5.05782 5.09799 5.10670 5.31342 5.32034 5.42424 5.44883 5.59225 5.61940 5.76890 5.78611 5.96655 6.03468 6.19609 6.21091 6.24361 6.36971 6.49933 6.58789 6.84423 6.90909 6.95361 7.21872 7.39491 7.83691 8.36442 8.80841 9.38016 10.90915 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.004582 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.657530 B = 6108.989763 C = 7740.823440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.247 3.753 3 H 0.039 0.961 4 C -0.526 4.526 5 H 0.084 0.916 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.880 3.120 9 H -0.274 1.274 10 H -0.294 1.294 11 H -0.263 1.263 12 N -1.091 6.091 13 S 2.690 3.310 14 O -0.975 6.975 15 O -0.964 6.964 16 C -0.659 4.659 17 C -0.020 4.020 18 C -0.112 4.112 19 C -0.056 4.056 20 C 0.296 3.704 21 C -0.164 4.164 22 O -0.364 6.364 23 C 0.016 3.984 24 C 0.019 3.981 25 O -0.371 6.371 26 C -0.114 4.114 27 C -0.020 4.020 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.267 0.733 32 H 0.415 0.585 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 10.561 -8.248 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.141 3.859 3 H 0.056 0.944 4 C -0.565 4.565 5 H 0.102 0.898 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.852 5.852 13 S 2.778 3.222 14 O -0.966 6.966 15 O -0.953 6.953 16 C -0.745 4.745 17 C -0.039 4.039 18 C -0.131 4.131 19 C -0.057 4.057 20 C 0.219 3.781 21 C -0.221 4.221 22 O -0.284 6.284 23 C -0.060 4.060 24 C -0.058 4.058 25 O -0.292 6.292 26 C -0.133 4.133 27 C -0.039 4.039 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.153 0.847 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.624 10.676 -8.946 18.142 hybrid contribution 0.205 0.702 1.081 1.305 sum 11.829 11.378 -7.865 18.200 Atomic orbital electron populations 1.22615 0.98853 1.01775 0.99870 1.18885 0.90574 0.92727 0.83745 0.94382 1.21098 1.32830 1.14452 0.88167 0.89847 1.24888 0.95520 0.96654 0.95661 1.69869 1.44943 1.40059 0.98009 0.86977 0.80978 0.83683 0.77416 1.20044 1.22144 1.18814 1.55295 1.80717 1.18789 1.30382 1.01870 0.73869 0.73447 0.72990 1.93537 1.82410 1.61581 1.59040 1.93559 1.50636 1.66975 1.84177 1.31143 1.16954 1.10658 1.15724 1.20944 0.99991 0.91549 0.91432 1.20989 0.91261 1.00906 0.99902 1.20036 0.93701 0.94575 0.97387 1.21935 0.84161 0.83513 0.88534 1.22337 1.02729 1.00428 0.96633 1.89239 1.42147 1.42381 1.54664 1.24377 0.95827 0.96322 0.89466 1.24260 0.89051 1.01789 0.90671 1.88904 1.56797 1.59502 1.24003 1.20989 0.99525 0.93251 0.99543 1.20860 0.90639 0.99276 0.93153 0.93378 0.93414 0.92148 0.92348 0.74990 0.84018 0.84639 0.90286 0.91334 0.90216 0.90582 0.87022 0.88011 0.89986 0.84731 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.00 37.16 0.33 -3.39 16 2 C 0.25 5.58 2.35 -69.08 -0.16 5.41 16 3 H 0.04 0.87 6.30 -51.93 -0.33 0.54 16 4 C -0.53 -13.90 9.34 -34.44 -0.32 -14.22 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 8 Si 0.88 20.99 24.37 -169.99 -4.14 16.85 16 9 H -0.27 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -5.96 6.53 56.52 0.37 -5.60 16 12 N -1.09 -21.18 5.46 -5.88 -0.03 -21.21 16 13 S 2.69 49.13 5.65 -107.50 -0.61 48.52 16 14 O -0.98 -18.58 17.28 -57.17 -0.99 -19.57 16 15 O -0.96 -19.28 16.54 -57.17 -0.95 -20.23 16 16 C -0.66 -11.37 5.82 -39.59 -0.23 -11.60 16 17 C -0.02 -0.33 8.92 -39.58 -0.35 -0.69 16 18 C -0.11 -1.71 9.35 -39.58 -0.37 -2.08 16 19 C -0.06 -0.82 4.95 -104.62 -0.52 -1.34 16 20 C 0.30 3.64 1.24 -27.88 -0.03 3.60 16 21 C -0.16 -1.59 9.18 37.16 0.34 -1.25 16 22 O -0.36 -4.37 9.99 -59.05 -0.59 -4.96 16 23 C 0.02 0.14 7.91 38.17 0.30 0.44 16 24 C 0.02 0.18 8.07 38.17 0.31 0.48 16 25 O -0.37 -4.63 9.87 -59.05 -0.58 -5.21 16 26 C -0.11 -1.67 9.35 -39.58 -0.37 -2.04 16 27 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 28 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 29 H 0.05 0.95 7.64 -51.93 -0.40 0.56 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.42 7.38 8.83 -34.47 -0.30 7.07 16 33 H 0.14 2.26 7.61 -52.48 -0.40 1.86 16 34 H 0.14 1.85 7.50 -52.49 -0.39 1.45 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.13 1.70 7.50 -52.49 -0.39 1.30 16 43 H 0.14 1.98 7.62 -52.49 -0.40 1.58 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -33.39 361.87 -8.98 -42.37 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.77 Total: 8.61 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -1.55 Total: -25.34 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.74 Total: -46.48 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -3.11 Total: -49.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.85 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.61 Total: 48.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.39 -8.98 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274313163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.194 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds