Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.53003 * 109.47411 * 269.99839 * 3 2 1 5 5 C 1.52997 * 109.47358 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.35898 * 117.00054 * 180.02562 * 6 5 4 8 8 C 1.38725 * 120.05735 * 180.02562 * 7 6 5 9 9 C 1.38137 * 119.94698 * 180.02562 * 8 7 6 10 10 C 1.38263 * 120.05623 * 0.02562 * 9 8 7 11 11 S 1.76200 * 119.94834 * 179.97438 * 10 9 8 12 12 C 1.81404 * 104.45035 * 89.99698 * 11 10 9 13 13 O 1.42107 * 104.27494 * 333.92807 * 11 10 9 14 14 O 1.42102 * 104.28011 * 206.06926 * 11 10 9 15 15 C 1.38265 * 120.11285 * 0.25081 * 10 9 8 16 16 C 1.38150 * 120.05274 * 359.45659 * 15 10 9 17 17 C 1.34777 * 120.00082 * 180.02562 * 2 1 3 18 18 O 1.21686 * 120.00210 * 179.97438 * 17 2 1 19 19 C 1.46381 * 119.99959 * 359.97438 * 17 2 1 20 20 H 1.07994 * 119.99914 * 0.02562 * 19 17 2 21 21 C 1.40045 * 119.99944 * 180.02562 * 19 17 2 22 22 N 1.30671 * 119.99982 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 119.99929 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46724 * 60.00422 * 23 21 19 25 25 H 1.48499 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47010 * 300.00123 * 23 21 19 27 27 H 1.09004 * 109.47201 * 89.99767 * 1 2 3 28 28 H 1.09004 * 109.47095 * 209.99401 * 1 2 3 29 29 H 1.08996 * 109.47282 * 329.99431 * 1 2 3 30 30 H 1.09010 * 109.46863 * 150.00578 * 3 2 1 31 31 H 1.08996 * 109.47150 * 30.00577 * 3 2 1 32 32 H 1.09007 * 109.46374 * 60.00011 * 4 3 2 33 33 H 1.09004 * 109.47237 * 300.00626 * 4 3 2 34 34 H 1.09000 * 109.46602 * 60.00270 * 5 4 3 35 35 H 1.08996 * 109.47160 * 300.00712 * 5 4 3 36 36 H 1.08007 * 120.02267 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.97413 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47124 * 60.00198 * 12 11 10 39 39 H 1.09001 * 109.46975 * 300.00319 * 12 11 10 40 40 H 1.09004 * 109.47147 * 180.02562 * 12 11 10 41 41 H 1.07992 * 119.97777 * 179.70573 * 15 10 9 42 42 H 1.07995 * 120.03154 * 180.25119 * 16 15 10 43 43 H 0.97005 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4425 6 8 3.4557 3.4480 -2.7898 7 6 4.1302 4.6143 -2.9678 8 6 4.3951 5.0751 -4.2492 9 6 5.0813 6.2607 -4.4275 10 6 5.5046 6.9876 -3.3302 11 16 6.3803 8.4991 -3.5610 12 6 5.0854 9.7683 -3.6177 13 8 6.9952 8.3569 -4.8342 14 8 7.1609 8.6355 -2.3814 15 6 5.2469 6.5276 -2.0520 16 6 4.5557 5.3457 -1.8683 17 6 2.1389 -1.1672 -0.0005 18 8 3.3557 -1.1672 -0.0010 19 6 1.4070 -2.4349 -0.0005 20 1 0.3270 -2.4349 -0.0005 21 6 2.1072 -3.6477 -0.0005 22 7 3.4139 -3.6477 0.0000 23 14 1.1732 -5.2655 0.0002 24 1 0.3191 -5.3444 -1.2120 25 1 2.1382 -6.3942 -0.0005 26 1 0.3200 -5.3439 1.2130 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1383 0.5138 31 1 1.6084 2.0283 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9508 -1.9564 34 1 4.1704 2.9043 -0.9288 35 1 2.6294 3.7949 -0.9285 36 1 4.0657 4.5070 -5.1066 37 1 5.2874 6.6201 -5.4249 38 1 4.5274 9.7602 -2.6814 39 1 4.4083 9.5597 -4.4460 40 1 5.5425 10.7476 -3.7602 41 1 5.5826 7.0948 -1.1965 42 1 4.3510 4.9888 -0.8698 43 1 3.8989 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274626541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = -114.740133 kcal Electronic energy + Delta-G solvation = -26180.305658 eV Core-core repulsion = 22125.735913 eV Total energy + Delta-G solvation = -4054.569744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.44934 -38.10922 -37.61028 -37.41091 -36.23672 -34.48172 -32.49936 -32.33015 -31.39026 -30.46306 -29.81292 -27.17227 -25.95191 -24.69194 -23.35626 -22.82937 -21.33333 -19.36034 -19.27390 -18.54686 -17.63924 -16.70098 -16.58173 -16.52796 -16.19484 -15.71609 -15.59041 -15.04980 -14.63521 -14.32852 -14.13438 -13.88924 -13.81020 -13.69385 -13.64729 -13.57824 -13.23616 -12.68133 -12.39329 -12.34456 -12.28102 -11.88136 -11.67823 -11.60318 -11.48179 -11.42057 -11.25808 -11.16144 -11.03370 -10.98013 -10.92227 -10.42084 -10.25864 -10.16881 -9.44407 -8.89858 -8.81948 -7.66968 -7.35086 -6.24790 -4.70805 -0.27480 0.63124 0.95982 2.54661 2.91112 3.11866 3.12026 3.17244 3.18782 3.62121 3.76324 4.04182 4.33284 4.33490 4.44511 4.48802 4.50643 4.58757 4.85450 4.94389 5.00534 5.14706 5.17803 5.19696 5.36739 5.53448 5.57564 5.58136 5.67760 5.77411 5.82835 5.91561 5.94167 6.01237 6.30594 6.37398 6.41967 6.47491 6.63879 7.12232 7.39269 7.53367 8.05940 8.26997 8.96545 9.33393 10.50963 10.69601 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.001699 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.539348 B =16473.027790 C =16681.315006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.648 5.648 3 C 0.133 3.867 4 C -0.133 4.133 5 C 0.060 3.940 6 O -0.305 6.305 7 C 0.193 3.807 8 C -0.176 4.176 9 C 0.013 3.987 10 C -0.707 4.707 11 S 2.506 3.494 12 C -0.651 4.651 13 O -0.941 6.941 14 O -0.941 6.941 15 C 0.018 3.982 16 C -0.232 4.232 17 C 0.555 3.445 18 O -0.576 6.576 19 C -0.544 4.544 20 H 0.072 0.928 21 C 0.087 3.913 22 N -0.766 5.766 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 24.882 -6.182 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.386 5.386 3 C 0.008 3.992 4 C -0.172 4.172 5 C -0.015 4.015 6 O -0.216 6.216 7 C 0.145 3.855 8 C -0.195 4.195 9 C -0.006 4.006 10 C -0.795 4.795 11 S 2.686 3.314 12 C -0.801 4.801 13 O -0.938 6.938 14 O -0.938 6.938 15 C -0.001 4.001 16 C -0.251 4.251 17 C 0.361 3.639 18 O -0.459 6.459 19 C -0.580 4.580 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.395 5.395 23 Si 0.732 3.268 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.202 24.696 -6.365 25.504 hybrid contribution -1.492 -1.001 0.252 1.815 sum -1.695 23.695 -6.113 24.530 Atomic orbital electron populations 1.21414 0.82031 1.01142 0.99659 1.47988 1.05240 1.05157 1.80249 1.20811 0.98172 0.86900 0.93283 1.22052 1.00272 0.94163 1.00710 1.23034 1.00728 0.97606 0.80169 1.86172 1.69147 1.35051 1.31262 1.19438 0.87329 0.84407 0.94280 1.20601 1.04990 0.98569 0.95387 1.20708 0.89811 0.92136 0.97913 1.30255 1.24984 1.24460 0.99810 1.04900 0.76129 0.75763 0.74581 1.30247 1.19698 1.18065 1.12100 1.93580 1.72780 1.85542 1.41921 1.93582 1.65494 1.86135 1.48606 1.20712 0.89923 0.94082 0.95419 1.21467 1.06257 0.98407 0.99004 1.18279 0.87002 0.82242 0.76358 1.90599 1.13990 1.86214 1.55049 1.20974 0.93696 0.89218 1.54138 0.90965 1.25750 0.94641 1.00371 0.92593 1.70007 1.07078 1.27495 1.34876 0.86432 0.79850 0.81023 0.79471 1.19242 1.20522 1.19240 0.95075 0.90867 0.94072 0.90662 0.92712 0.91387 0.90045 0.91227 0.91764 0.84113 0.83586 0.85028 0.85005 0.85185 0.83905 0.84194 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.19 59.85 0.61 2.40 16 2 N -0.65 -14.16 2.87 -183.24 -0.53 -14.69 16 3 C 0.13 2.39 5.45 -4.04 -0.02 2.36 16 4 C -0.13 -2.16 5.91 -26.73 -0.16 -2.32 16 5 C 0.06 0.77 4.74 37.16 0.18 0.95 16 6 O -0.30 -4.22 10.14 -19.42 -0.20 -4.42 16 7 C 0.19 2.34 6.69 -39.22 -0.26 2.08 16 8 C -0.18 -1.88 9.99 -39.44 -0.39 -2.27 16 9 C 0.01 0.12 9.46 -39.61 -0.37 -0.25 16 10 C -0.71 -6.32 5.66 -39.56 -0.22 -6.54 16 11 S 2.51 18.54 5.80 -107.50 -0.62 17.92 16 12 C -0.65 -1.99 10.80 101.05 1.09 -0.90 16 13 O -0.94 -9.94 17.12 -57.54 -0.99 -10.92 16 14 O -0.94 -10.07 17.11 -57.54 -0.98 -11.06 16 15 C 0.02 0.17 9.46 -39.60 -0.37 -0.21 16 16 C -0.23 -2.45 9.04 -39.43 -0.36 -2.81 16 17 C 0.55 15.42 7.61 -12.98 -0.10 15.32 16 18 O -0.58 -18.17 14.60 5.20 0.08 -18.09 16 19 C -0.54 -14.97 8.74 -35.63 -0.31 -15.28 16 20 H 0.07 1.80 6.00 -52.49 -0.31 1.49 16 21 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 22 N -0.77 -22.65 11.83 55.55 0.66 -21.99 16 23 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.34 6.09 -51.93 -0.32 1.02 16 29 H 0.04 0.58 7.89 -51.93 -0.41 0.17 16 30 H 0.08 1.49 7.42 -51.92 -0.39 1.11 16 31 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 35 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 36 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.15 1.01 7.57 -52.48 -0.40 0.61 16 38 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 39 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 40 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 41 H 0.14 1.05 7.56 -52.49 -0.40 0.65 16 42 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 43 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -39.28 376.83 -8.57 -47.86 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.85 Total: 0.17 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.79 Total: -5.19 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.13 Total: -36.68 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -2.09 Total: -44.49 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 18.54 SS G_CDS: -0.62 Total: 17.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.28 -8.57 -47.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274626541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.884 kcal (2) G-P(sol) polarization free energy of solvation -39.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds