Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.53003 * 109.47411 * 269.99839 * 3 2 1 5 5 C 1.52997 * 109.47358 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.35898 * 117.00054 * 180.02562 * 6 5 4 8 8 C 1.38725 * 120.05735 * 180.02562 * 7 6 5 9 9 C 1.38137 * 119.94698 * 180.02562 * 8 7 6 10 10 C 1.38263 * 120.05623 * 0.02562 * 9 8 7 11 11 S 1.76200 * 119.94834 * 179.97438 * 10 9 8 12 12 C 1.81404 * 104.45035 * 89.99698 * 11 10 9 13 13 O 1.42107 * 104.27494 * 333.92807 * 11 10 9 14 14 O 1.42102 * 104.28011 * 206.06926 * 11 10 9 15 15 C 1.38265 * 120.11285 * 0.25081 * 10 9 8 16 16 C 1.38150 * 120.05274 * 359.45659 * 15 10 9 17 17 C 1.34777 * 120.00082 * 180.02562 * 2 1 3 18 18 O 1.21686 * 120.00210 * 179.97438 * 17 2 1 19 19 C 1.46381 * 119.99959 * 359.97438 * 17 2 1 20 20 H 1.07994 * 119.99914 * 0.02562 * 19 17 2 21 21 C 1.40045 * 119.99944 * 180.02562 * 19 17 2 22 22 N 1.30671 * 119.99982 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 119.99929 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46724 * 60.00422 * 23 21 19 25 25 H 1.48499 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47010 * 300.00123 * 23 21 19 27 27 H 1.09004 * 109.47201 * 89.99767 * 1 2 3 28 28 H 1.09004 * 109.47095 * 209.99401 * 1 2 3 29 29 H 1.08996 * 109.47282 * 329.99431 * 1 2 3 30 30 H 1.09010 * 109.46863 * 150.00578 * 3 2 1 31 31 H 1.08996 * 109.47150 * 30.00577 * 3 2 1 32 32 H 1.09007 * 109.46374 * 60.00011 * 4 3 2 33 33 H 1.09004 * 109.47237 * 300.00626 * 4 3 2 34 34 H 1.09000 * 109.46602 * 60.00270 * 5 4 3 35 35 H 1.08996 * 109.47160 * 300.00712 * 5 4 3 36 36 H 1.08007 * 120.02267 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.97413 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47124 * 60.00198 * 12 11 10 39 39 H 1.09001 * 109.46975 * 300.00319 * 12 11 10 40 40 H 1.09004 * 109.47147 * 180.02562 * 12 11 10 41 41 H 1.07992 * 119.97777 * 179.70573 * 15 10 9 42 42 H 1.07995 * 120.03154 * 180.25119 * 16 15 10 43 43 H 0.97005 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4425 6 8 3.4557 3.4480 -2.7898 7 6 4.1302 4.6143 -2.9678 8 6 4.3951 5.0751 -4.2492 9 6 5.0813 6.2607 -4.4275 10 6 5.5046 6.9876 -3.3302 11 16 6.3803 8.4991 -3.5610 12 6 5.0854 9.7683 -3.6177 13 8 6.9952 8.3569 -4.8342 14 8 7.1609 8.6355 -2.3814 15 6 5.2469 6.5276 -2.0520 16 6 4.5557 5.3457 -1.8683 17 6 2.1389 -1.1672 -0.0005 18 8 3.3557 -1.1672 -0.0010 19 6 1.4070 -2.4349 -0.0005 20 1 0.3270 -2.4349 -0.0005 21 6 2.1072 -3.6477 -0.0005 22 7 3.4139 -3.6477 0.0000 23 14 1.1732 -5.2655 0.0002 24 1 0.3191 -5.3444 -1.2120 25 1 2.1382 -6.3942 -0.0005 26 1 0.3200 -5.3439 1.2130 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1383 0.5138 31 1 1.6084 2.0283 0.5139 32 1 1.5000 1.8408 -1.9563 33 1 3.0415 0.9508 -1.9564 34 1 4.1704 2.9043 -0.9288 35 1 2.6294 3.7949 -0.9285 36 1 4.0657 4.5070 -5.1066 37 1 5.2874 6.6201 -5.4249 38 1 4.5274 9.7602 -2.6814 39 1 4.4083 9.5597 -4.4460 40 1 5.5425 10.7476 -3.7602 41 1 5.5826 7.0948 -1.1965 42 1 4.3510 4.9888 -0.8698 43 1 3.8989 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274626541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -144.579965 kcal Electronic energy + Delta-G solvation = -26181.599610 eV Core-core repulsion = 22125.735913 eV Total energy + Delta-G solvation = -4055.863697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32729 -39.78453 -38.68944 -38.10587 -36.93477 -36.27302 -34.60930 -33.68235 -32.18052 -31.27693 -30.17686 -28.85129 -27.61050 -26.15061 -24.25940 -23.84060 -22.53409 -21.04219 -20.00689 -19.43568 -18.51623 -18.35599 -17.75727 -17.41915 -17.26540 -17.07545 -16.52142 -16.16201 -15.98898 -15.80713 -15.48097 -14.93609 -14.82252 -14.61469 -14.33591 -14.14491 -13.91102 -13.87824 -13.55738 -13.47331 -13.28449 -13.11254 -13.10188 -13.01848 -12.96623 -12.70871 -12.63431 -12.45166 -12.15808 -12.07465 -12.03315 -11.93330 -11.65827 -11.61938 -10.92715 -10.20071 -9.81671 -9.66185 -9.14520 -8.29845 -6.85567 -0.80772 -0.15093 0.19369 1.38927 1.42105 1.53808 1.88560 2.00567 2.23786 2.36802 2.45740 2.90813 3.07788 3.21670 3.59760 3.62264 3.76848 3.81391 3.94479 4.13838 4.15958 4.17977 4.20098 4.29688 4.31811 4.45670 4.53169 4.57456 4.64133 4.82063 4.88568 4.92451 4.99060 5.00883 5.02381 5.03809 5.14261 5.22291 5.36263 5.58416 5.75298 6.13474 6.20867 6.40396 6.86716 7.39048 8.45874 8.66195 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.001699 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.539348 B =16473.027790 C =16681.315006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.653 5.653 3 C 0.131 3.869 4 C -0.120 4.120 5 C 0.068 3.932 6 O -0.327 6.327 7 C 0.165 3.835 8 C -0.188 4.188 9 C 0.010 3.990 10 C -0.706 4.706 11 S 2.512 3.488 12 C -0.623 4.623 13 O -0.979 6.979 14 O -0.980 6.980 15 C 0.010 3.990 16 C -0.238 4.238 17 C 0.537 3.463 18 O -0.630 6.630 19 C -0.570 4.570 20 H 0.094 0.906 21 C 0.026 3.974 22 N -0.822 5.822 23 Si 0.996 3.004 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.252 1.252 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 27.133 -6.130 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.389 5.389 3 C 0.007 3.993 4 C -0.159 4.159 5 C -0.007 4.007 6 O -0.240 6.240 7 C 0.118 3.882 8 C -0.207 4.207 9 C -0.009 4.009 10 C -0.792 4.792 11 S 2.695 3.305 12 C -0.777 4.777 13 O -0.976 6.976 14 O -0.977 6.977 15 C -0.009 4.009 16 C -0.257 4.257 17 C 0.343 3.657 18 O -0.518 6.518 19 C -0.607 4.607 20 H 0.112 0.888 21 C -0.189 4.189 22 N -0.452 5.452 23 Si 0.815 3.185 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.175 1.175 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.164 0.836 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.901 26.959 -6.313 27.839 hybrid contribution -0.678 -1.469 0.197 1.630 sum -3.579 25.490 -6.116 26.456 Atomic orbital electron populations 1.21618 0.79156 1.02861 1.00853 1.47859 1.07213 1.04979 1.78856 1.21005 0.97421 0.86392 0.94446 1.21802 1.00415 0.94615 0.99110 1.22878 1.00629 0.96701 0.80510 1.86103 1.70172 1.36353 1.31347 1.19682 0.88715 0.84369 0.95389 1.20829 1.05383 0.99266 0.95266 1.20999 0.89192 0.91554 0.99146 1.30579 1.23681 1.25322 0.99588 1.04675 0.76836 0.76027 0.72930 1.30034 1.17482 1.15834 1.14395 1.93532 1.74792 1.86286 1.43006 1.93532 1.67876 1.86609 1.49691 1.21015 0.89585 0.93891 0.96401 1.21667 1.06261 0.98653 0.99151 1.18665 0.86643 0.84372 0.76048 1.90548 1.16282 1.87598 1.57337 1.21540 0.94969 0.89894 1.54260 0.88783 1.27025 0.95507 1.05074 0.91265 1.70195 1.09573 1.28910 1.36522 0.85102 0.78236 0.74806 0.80376 1.17855 1.20180 1.17544 0.94031 0.91825 0.89683 0.93561 0.87714 0.90235 0.95132 0.91738 0.88141 0.83634 0.81542 0.82838 0.82762 0.82877 0.82009 0.83055 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.24 10.19 127.77 1.30 4.55 16 2 N -0.65 -28.61 2.87 -851.87 -2.45 -31.06 16 3 C 0.13 4.67 5.45 86.38 0.47 5.15 16 4 C -0.12 -3.99 5.91 30.59 0.18 -3.81 16 5 C 0.07 1.74 4.74 71.98 0.34 2.09 16 6 O -0.33 -9.23 10.14 -92.41 -0.94 -10.17 16 7 C 0.17 4.01 6.69 22.51 0.15 4.16 16 8 C -0.19 -4.01 9.99 22.36 0.22 -3.79 16 9 C 0.01 0.17 9.46 22.25 0.21 0.38 16 10 C -0.71 -11.73 5.66 22.28 0.13 -11.60 16 11 S 2.51 33.19 5.80 -56.49 -0.33 32.86 16 12 C -0.62 -1.19 10.80 113.37 1.22 0.04 16 13 O -0.98 -19.87 17.12 -127.65 -2.19 -22.06 16 14 O -0.98 -20.14 17.11 -127.65 -2.18 -22.32 16 15 C 0.01 0.17 9.46 22.26 0.21 0.38 16 16 C -0.24 -4.87 9.04 22.37 0.20 -4.67 16 17 C 0.54 30.93 7.61 86.36 0.66 31.59 16 18 O -0.63 -42.19 14.60 -4.31 -0.06 -42.26 16 19 C -0.57 -31.96 8.74 24.83 0.22 -31.74 16 20 H 0.09 4.66 6.00 -2.91 -0.02 4.64 16 21 C 0.03 1.46 5.50 85.30 0.47 1.93 16 22 N -0.82 -50.68 11.83 21.83 0.26 -50.42 16 23 Si 1.00 40.73 29.56 68.60 2.03 42.76 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 2.22 6.09 -2.38 -0.01 2.21 16 29 H 0.08 2.08 7.89 -2.39 -0.02 2.06 16 30 H 0.05 1.91 7.42 -2.38 -0.02 1.90 16 31 H 0.10 2.68 7.89 -2.39 -0.02 2.66 16 32 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 35 H 0.10 1.85 7.67 -2.39 -0.02 1.83 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.17 2.10 7.57 -2.91 -0.02 2.08 16 38 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.16 2.12 7.56 -2.91 -0.02 2.10 16 42 H 0.15 2.59 6.30 -2.91 -0.02 2.57 16 43 H 0.27 15.34 8.29 -92.70 -0.77 14.57 16 Total: -1.00 -92.15 376.83 1.15 -91.00 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.03 Total: 17.01 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.99 Total: -5.34 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.19 Total: -81.48 kcal Atomic # 8 Polarization: -91.44 SS G_CDS: -5.37 Total: -96.80 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 33.19 SS G_CDS: -0.33 Total: 32.86 kcal Total: -92.15 1.15 -91.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274626541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.582 kcal (2) G-P(sol) polarization free energy of solvation -92.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds