Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46504 * 2 1 4 4 C 1.50704 * 109.47020 * 240.00797 * 2 1 3 5 5 O 1.20820 * 119.99984 * 359.97438 * 4 2 1 6 6 O 1.34225 * 119.99655 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47169 * 120.00147 * 2 1 3 8 8 H 1.09002 * 109.47054 * 65.51657 * 7 2 1 9 9 N 1.46492 * 109.47366 * 305.50921 * 7 2 1 10 10 S 1.65607 * 120.00054 * 143.83400 * 9 7 2 11 11 O 1.42098 * 104.27798 * 181.07900 * 10 9 7 12 12 O 1.42094 * 104.27435 * 308.93812 * 10 9 7 13 13 C 1.81401 * 104.44723 * 65.00667 * 10 9 7 14 14 C 1.53002 * 109.47164 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.47122 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00080 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00252 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99910 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47212 * 60.00225 * 19 17 15 21 21 H 1.48503 * 109.47433 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47267 * 300.00260 * 19 17 15 23 23 C 1.50708 * 109.46749 * 185.51125 * 7 2 1 24 24 C 1.38232 * 119.99763 * 79.73046 * 23 7 2 25 25 C 1.38239 * 119.99573 * 179.78976 * 24 23 7 26 26 C 1.38235 * 119.99842 * 0.43491 * 25 24 23 27 27 C 1.38228 * 120.00137 * 359.81488 * 26 25 24 28 28 C 1.38234 * 120.00492 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47410 * 304.75303 * 1 2 3 30 30 H 1.08999 * 109.47403 * 64.75965 * 1 2 3 31 31 H 1.09006 * 109.47161 * 184.75972 * 1 2 3 32 32 H 0.96700 * 116.99783 * 179.97438 * 6 4 2 33 33 H 0.97007 * 120.00527 * 323.83743 * 9 7 2 34 34 H 1.08999 * 109.47129 * 300.00268 * 13 10 9 35 35 H 1.09005 * 109.46912 * 60.00402 * 13 10 9 36 36 H 1.08995 * 109.47134 * 300.00595 * 14 13 10 37 37 H 1.09005 * 109.46705 * 60.00487 * 14 13 10 38 38 H 0.96997 * 120.00114 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.00435 * 359.97438 * 24 23 7 40 40 H 1.08000 * 119.99921 * 180.27252 * 25 24 23 41 41 H 1.07999 * 119.99607 * 179.83684 * 26 25 24 42 42 H 1.08010 * 120.00124 * 179.97438 * 27 26 25 43 43 H 1.07988 * 120.00392 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.2472 -1.1697 -2.0257 6 8 3.3520 -0.8324 -1.4432 7 6 2.0400 -0.7212 1.2492 8 1 1.7596 -1.7735 1.2011 9 7 1.4465 -0.1116 2.4416 10 16 1.0367 -1.0568 3.7382 11 8 0.4789 -0.1449 4.6744 12 8 0.2535 -2.1012 3.1768 13 6 2.6192 -1.7036 4.3449 14 6 2.3713 -2.6027 5.5578 15 6 3.6859 -3.1405 6.0614 16 1 4.6062 -2.8679 5.5662 17 6 3.7138 -3.9805 7.1544 18 7 2.5931 -4.3128 7.7571 19 14 5.3433 -4.6465 7.7791 20 1 6.2219 -3.5159 8.1731 21 1 5.1027 -5.5203 8.9555 22 1 6.0010 -5.4333 6.7051 23 6 3.5409 -0.6041 1.3192 24 6 4.1222 0.5588 1.7889 25 6 5.4988 0.6646 1.8573 26 6 6.2942 -0.3892 1.4474 27 6 5.7129 -1.5500 0.9728 28 6 4.3362 -1.6576 0.9085 29 1 -0.3634 0.5858 0.8444 30 1 -0.3634 0.4382 -0.9295 31 1 -0.3634 -1.0242 0.0853 32 1 3.6262 -1.2963 -2.2462 33 1 1.2934 0.8459 2.4719 34 1 3.1018 -2.2812 3.5565 35 1 3.2640 -0.8736 4.6340 36 1 1.8888 -2.0247 6.3460 37 1 1.7264 -3.4327 5.2691 38 1 2.6127 -4.9040 8.5258 39 1 3.5009 1.3835 2.1054 40 1 5.9529 1.5714 2.2284 41 1 7.3697 -0.3055 1.4983 42 1 6.3343 -2.3732 0.6522 43 1 3.8821 -2.5646 0.5382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275007951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -148.219806 kcal Electronic energy + Delta-G solvation = -28747.466433 eV Core-core repulsion = 24691.444901 eV Total energy + Delta-G solvation = -4056.021532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86139 -39.32198 -36.92567 -36.54262 -36.22240 -35.48818 -33.88969 -32.20543 -31.23315 -30.98954 -30.72955 -26.44112 -25.58892 -24.40355 -22.69243 -21.81324 -21.47365 -20.45251 -19.15516 -18.33999 -17.60944 -17.23248 -16.84790 -16.72054 -16.10661 -15.76781 -15.39424 -15.10259 -14.93216 -14.55683 -14.35858 -14.01351 -13.62446 -13.44876 -13.38993 -13.01021 -12.69680 -12.49344 -12.47398 -12.05046 -11.79750 -11.75283 -11.69549 -11.64931 -11.57699 -11.34473 -11.30616 -11.06668 -11.01978 -10.96779 -10.74232 -10.44981 -10.37421 -9.90472 -9.58774 -9.09118 -8.86166 -8.74489 -8.49291 -6.11587 -4.16776 0.71494 1.29787 1.44219 1.95908 2.73807 3.11104 3.27283 3.32232 3.33972 3.75430 4.15398 4.29915 4.37496 4.41836 4.64371 4.70454 4.78042 4.91178 4.99324 5.10996 5.14950 5.23586 5.23949 5.36322 5.50381 5.59357 5.61536 5.67530 5.71962 5.83926 5.94079 6.03449 6.04987 6.29687 6.44834 6.50024 6.52793 6.56514 6.92864 6.99301 7.30242 7.36061 7.68434 7.81668 8.18586 8.86451 9.47796 10.99501 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.004215 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.813232 B = 6640.567430 C = 7990.645169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.116 0.884 4 C 0.486 3.514 5 O -0.511 6.511 6 O -0.501 6.501 7 C 0.203 3.797 8 H 0.106 0.894 9 N -1.116 6.116 10 S 2.587 3.413 11 O -0.964 6.964 12 O -0.963 6.963 13 C -0.583 4.583 14 C 0.029 3.971 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.109 4.109 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.414 0.586 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 11.134 -18.256 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.133 0.867 4 C 0.327 3.673 5 O -0.399 6.399 6 O -0.312 6.312 7 C 0.094 3.906 8 H 0.124 0.876 9 N -0.871 5.871 10 S 2.685 3.315 11 O -0.954 6.954 12 O -0.953 6.953 13 C -0.716 4.716 14 C -0.010 4.010 15 C -0.557 4.557 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.135 4.135 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.264 0.736 33 H 0.248 0.752 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.919 10.793 -17.673 20.913 hybrid contribution 1.810 -0.292 -0.178 1.842 sum 4.729 10.501 -17.852 21.244 Atomic orbital electron populations 1.21755 0.90765 1.04468 1.02836 1.21338 0.98413 1.00921 0.89451 0.86657 1.23203 0.80212 0.76778 0.87103 1.90732 1.57076 1.45444 1.46652 1.84726 1.25630 1.72845 1.47998 1.19473 0.88771 0.98337 0.84003 0.87582 1.55922 1.79955 1.21433 1.29821 1.05779 0.78422 0.74243 0.73021 1.93562 1.77077 1.63086 1.61705 1.93551 1.67070 1.57805 1.76909 1.30424 1.18531 1.11474 1.11218 1.18956 0.99550 0.93468 0.88996 1.20941 0.92124 1.29042 1.13571 0.92086 1.25049 0.96714 0.96169 0.96460 1.69942 1.26211 1.35343 1.21434 0.86551 0.83533 0.78943 0.78367 1.20097 1.21099 1.20105 1.20093 0.94527 0.95253 1.01237 1.20843 0.94804 0.97065 0.98860 1.21076 0.93697 0.98954 1.00289 1.21136 0.99683 0.93693 0.98581 1.21045 0.94689 0.97736 0.99986 1.20858 0.93709 0.97667 0.97852 0.90643 0.91398 0.90832 0.73630 0.75193 0.86279 0.86013 0.94929 0.94917 0.92502 0.86186 0.86272 0.86424 0.86186 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.23 37.16 0.31 -1.07 16 2 C -0.08 -0.74 2.52 -91.77 -0.23 -0.97 16 3 H 0.12 0.80 8.13 -51.93 -0.42 0.38 16 4 C 0.49 4.82 7.59 36.01 0.27 5.09 16 5 O -0.51 -6.59 16.68 -18.75 -0.31 -6.90 16 6 O -0.50 -3.80 10.25 -39.25 -0.40 -4.20 16 7 C 0.20 2.20 1.98 -69.09 -0.14 2.07 16 8 H 0.11 1.27 7.34 -51.93 -0.38 0.89 16 9 N -1.12 -12.99 3.80 -5.89 -0.02 -13.01 16 10 S 2.59 44.45 5.43 -107.50 -0.58 43.86 16 11 O -0.96 -19.24 18.08 -57.54 -1.04 -20.28 16 12 O -0.96 -19.23 17.39 -57.54 -1.00 -20.23 16 13 C -0.58 -11.00 5.75 37.16 0.21 -10.79 16 14 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 15 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.11 -1.17 3.44 -104.62 -0.36 -1.53 16 24 C -0.10 -0.98 9.31 -39.58 -0.37 -1.35 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.11 -1.14 10.05 -39.59 -0.40 -1.54 16 27 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 28 C -0.08 -0.89 7.57 -39.58 -0.30 -1.19 16 29 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 30 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 1.58 9.10 45.56 0.41 2.00 16 33 H 0.41 3.65 8.47 -34.47 -0.29 3.36 16 34 H 0.12 2.07 7.84 -51.92 -0.41 1.67 16 35 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 0.99 7.54 -52.49 -0.40 0.59 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -36.93 376.64 -9.53 -46.46 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.21 Total: 4.98 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.35 Total: -26.83 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.71 Total: -38.64 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -2.76 Total: -51.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 44.45 SS G_CDS: -0.58 Total: 43.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.93 -9.53 -46.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.755 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds