Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46490 * 2 1 4 4 C 1.50699 * 109.47352 * 120.00237 * 2 1 3 5 5 O 1.20823 * 119.99866 * 0.02562 * 4 2 1 6 6 O 1.34225 * 119.99872 * 180.27967 * 4 2 1 7 7 C 1.52997 * 109.47052 * 240.00726 * 2 1 3 8 8 H 1.09000 * 109.46990 * 294.64003 * 7 2 1 9 9 N 1.46501 * 109.47680 * 54.64132 * 7 2 1 10 10 S 1.65593 * 120.00197 * 216.52882 * 9 7 2 11 11 O 1.42097 * 104.27874 * 181.72671 * 10 9 7 12 12 O 1.42105 * 104.27658 * 309.58474 * 10 9 7 13 13 C 1.81398 * 104.45149 * 65.65511 * 10 9 7 14 14 C 1.53005 * 109.47247 * 184.84474 * 13 10 9 15 15 C 1.50700 * 109.46897 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00447 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99700 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99938 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47183 * 89.99911 * 19 17 15 21 21 H 1.48507 * 109.46665 * 209.99599 * 19 17 15 22 22 H 1.48504 * 109.47015 * 329.99543 * 19 17 15 23 23 C 1.50702 * 109.46864 * 174.64125 * 7 2 1 24 24 C 1.38242 * 120.00135 * 279.72238 * 23 7 2 25 25 C 1.38227 * 120.00243 * 179.81242 * 24 23 7 26 26 C 1.38245 * 119.99944 * 0.39884 * 25 24 23 27 27 C 1.38235 * 119.99498 * 359.85375 * 26 25 24 28 28 C 1.38231 * 120.00442 * 359.95850 * 27 26 25 29 29 H 1.08999 * 109.47110 * 304.66948 * 1 2 3 30 30 H 1.08993 * 109.47104 * 64.67271 * 1 2 3 31 31 H 1.08998 * 109.46379 * 184.67169 * 1 2 3 32 32 H 0.96698 * 116.99988 * 179.72840 * 6 4 2 33 33 H 0.96999 * 119.99726 * 36.52319 * 9 7 2 34 34 H 1.09002 * 109.47279 * 304.84373 * 13 10 9 35 35 H 1.08999 * 109.47095 * 64.84355 * 13 10 9 36 36 H 1.09002 * 109.46899 * 300.00132 * 14 13 10 37 37 H 1.08999 * 109.47170 * 59.99927 * 14 13 10 38 38 H 0.96996 * 119.99729 * 179.97438 * 18 17 15 39 39 H 1.07999 * 119.99348 * 0.02562 * 24 23 7 40 40 H 1.07994 * 120.00472 * 180.23500 * 25 24 23 41 41 H 1.07992 * 119.99896 * 179.83414 * 26 25 24 42 42 H 1.07999 * 119.99762 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00179 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 1.2473 -1.1701 2.0255 6 8 3.3521 -0.8281 1.4456 7 6 2.0400 -0.7211 -1.2493 8 1 1.7572 -1.7727 -1.2027 9 7 1.4493 -0.1089 -2.4420 10 16 1.0308 -1.0531 -3.7364 11 8 0.5401 -0.1303 -4.6992 12 8 2.1921 -1.8311 -3.9927 13 6 -0.3135 -2.1013 -3.1163 14 6 -0.7107 -3.1121 -4.1941 15 6 -1.8272 -3.9833 -3.6787 16 1 -2.2144 -3.8316 -2.6820 17 6 -2.3536 -4.9748 -4.4793 18 7 -1.8817 -5.1599 -5.6928 19 14 -3.7379 -6.0542 -3.8407 20 1 -5.0446 -5.4336 -4.1763 21 1 -3.6505 -7.3959 -4.4714 22 1 -3.6190 -6.1914 -2.3668 23 6 3.5412 -0.6072 -1.3174 24 6 4.1256 0.5507 -1.7959 25 6 5.5025 0.6567 -1.8547 26 6 6.2952 -0.3983 -1.4428 27 6 5.7108 -1.5581 -0.9692 28 6 4.3338 -1.6626 -0.9068 29 1 -0.3633 0.5846 0.8452 30 1 -0.3633 0.4396 -0.9288 31 1 -0.3632 -1.0243 0.0837 32 1 3.6263 -1.2885 2.2505 33 1 1.3032 0.8495 -2.4734 34 1 0.0214 -2.6328 -2.2256 35 1 -1.1733 -1.4796 -2.8667 36 1 -1.0457 -2.5806 -5.0849 37 1 0.1491 -3.7337 -4.4438 38 1 -2.2518 -5.8576 -6.2559 39 1 3.5062 1.3738 -2.1204 40 1 5.9591 1.5626 -2.2249 41 1 7.3710 -0.3165 -1.4912 42 1 6.3300 -2.3825 -0.6478 43 1 3.8772 -2.5689 -0.5372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275007953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -147.020661 kcal Electronic energy + Delta-G solvation = -28516.936561 eV Core-core repulsion = 24460.967028 eV Total energy + Delta-G solvation = -4055.969533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86355 -39.29699 -36.91425 -36.56765 -36.23153 -35.47015 -33.92338 -32.17963 -31.20234 -31.05692 -30.74754 -26.47178 -25.64007 -24.40257 -22.70096 -21.72119 -21.62640 -20.44504 -19.15929 -18.32636 -17.61131 -17.26862 -16.85509 -16.69992 -16.16380 -15.72798 -15.42400 -15.11237 -14.92925 -14.57585 -14.38150 -14.01834 -13.62569 -13.48586 -13.38868 -13.03194 -12.70169 -12.56239 -12.47045 -12.06371 -11.81361 -11.79129 -11.67065 -11.62194 -11.53457 -11.39662 -11.28646 -11.09415 -11.03152 -10.95950 -10.76624 -10.44403 -10.40253 -9.90876 -9.61985 -9.11997 -8.84888 -8.70962 -8.51497 -6.13723 -4.19374 0.68512 1.33532 1.45855 1.95089 2.72634 3.10928 3.25711 3.32197 3.34937 3.76057 4.14240 4.27105 4.36000 4.46285 4.57237 4.66124 4.81068 4.91029 4.98146 5.06887 5.09968 5.21634 5.21847 5.34521 5.50420 5.56902 5.58047 5.60714 5.67630 5.79971 5.95206 6.00534 6.05414 6.29655 6.44112 6.44935 6.51641 6.59567 6.91155 7.00808 7.27278 7.33437 7.68320 7.79315 8.15472 8.84112 9.45661 10.97270 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003650 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.468737 B = 7669.816812 C = 8503.061620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.117 0.883 4 C 0.485 3.515 5 O -0.509 6.509 6 O -0.502 6.502 7 C 0.207 3.793 8 H 0.099 0.901 9 N -1.117 6.117 10 S 2.587 3.413 11 O -0.964 6.964 12 O -0.954 6.954 13 C -0.591 4.591 14 C 0.029 3.971 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.091 4.091 24 C -0.098 4.098 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.078 4.078 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.406 0.594 33 H 0.414 0.586 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 12.873 13.952 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.135 0.865 4 C 0.326 3.674 5 O -0.397 6.397 6 O -0.313 6.313 7 C 0.098 3.902 8 H 0.117 0.883 9 N -0.872 5.872 10 S 2.684 3.316 11 O -0.955 6.955 12 O -0.944 6.944 13 C -0.724 4.724 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.092 4.092 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.097 4.097 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.248 0.752 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.348 12.713 12.780 22.430 hybrid contribution -0.998 -0.685 1.314 1.787 sum 12.350 12.029 14.094 22.268 Atomic orbital electron populations 1.21829 0.90660 1.04552 1.03320 1.21414 0.98468 1.01134 0.89575 0.86534 1.23184 0.80239 0.76815 0.87177 1.90748 1.57033 1.45290 1.46605 1.84721 1.25651 1.73049 1.47844 1.19407 0.89531 0.97479 0.83768 0.88304 1.56000 1.78359 1.20813 1.32037 1.05845 0.77034 0.75186 0.73515 1.93562 1.82606 1.61946 1.57377 1.93581 1.46270 1.71643 1.82861 1.30495 1.16148 1.13716 1.12078 1.18959 0.98596 0.92289 0.91161 1.20993 1.18055 1.16107 1.00832 0.91993 1.25062 0.97161 0.97335 0.94868 1.69954 1.41979 1.32801 1.08072 0.86480 0.82069 0.79750 0.79063 1.20447 1.21007 1.19724 1.19924 0.94289 0.94979 1.00046 1.20812 0.94777 0.97241 0.98802 1.21043 0.93710 0.98897 1.00704 1.21096 0.99507 0.93797 0.99204 1.21019 0.94677 0.97767 1.00350 1.20820 0.93678 0.97478 0.97708 0.91275 0.90255 0.90724 0.73590 0.75174 0.86428 0.85856 0.94983 0.94656 0.92517 0.86406 0.86397 0.86515 0.86282 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.40 37.16 0.31 -1.02 16 2 C -0.09 -0.75 2.53 -91.77 -0.23 -0.99 16 3 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.48 4.78 7.58 36.01 0.27 5.06 16 5 O -0.51 -6.57 16.68 -18.75 -0.31 -6.89 16 6 O -0.50 -3.85 10.26 -39.24 -0.40 -4.25 16 7 C 0.21 2.25 1.85 -69.08 -0.13 2.12 16 8 H 0.10 1.12 7.00 -51.93 -0.36 0.76 16 9 N -1.12 -12.89 3.62 -5.88 -0.02 -12.91 16 10 S 2.59 43.93 5.37 -107.50 -0.58 43.35 16 11 O -0.96 -19.03 18.08 -57.54 -1.04 -20.07 16 12 O -0.95 -19.27 17.80 -57.54 -1.02 -20.30 16 13 C -0.59 -10.77 5.95 37.16 0.22 -10.55 16 14 C 0.03 0.72 4.98 -27.88 -0.14 0.59 16 15 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.09 -1.05 4.00 -104.62 -0.42 -1.46 16 24 C -0.10 -1.07 9.33 -39.58 -0.37 -1.44 16 25 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 28 C -0.08 -0.89 7.58 -39.59 -0.30 -1.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.62 7.24 -51.93 -0.38 0.25 16 31 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 32 H 0.41 1.61 9.10 45.56 0.41 2.02 16 33 H 0.41 3.60 8.46 -34.46 -0.29 3.31 16 34 H 0.12 1.90 7.39 -51.92 -0.38 1.52 16 35 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 1.07 7.51 -52.49 -0.39 0.68 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.22 8.04 -52.49 -0.42 0.80 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -37.60 376.49 -9.53 -47.12 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.15 Total: 4.44 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.38 Total: -26.72 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.72 Total: -38.44 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.78 Total: -51.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 43.93 SS G_CDS: -0.58 Total: 43.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.60 -9.53 -47.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.899 kcal (2) G-P(sol) polarization free energy of solvation -37.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds