Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46490 * 2 1 4 4 C 1.50699 * 109.47352 * 120.00237 * 2 1 3 5 5 O 1.20823 * 119.99866 * 0.02562 * 4 2 1 6 6 O 1.34225 * 119.99872 * 180.27967 * 4 2 1 7 7 C 1.52997 * 109.47052 * 240.00726 * 2 1 3 8 8 H 1.09000 * 109.46990 * 294.64003 * 7 2 1 9 9 N 1.46501 * 109.47680 * 54.64132 * 7 2 1 10 10 S 1.65593 * 120.00197 * 216.52882 * 9 7 2 11 11 O 1.42097 * 104.27874 * 181.72671 * 10 9 7 12 12 O 1.42105 * 104.27658 * 309.58474 * 10 9 7 13 13 C 1.81398 * 104.45149 * 65.65511 * 10 9 7 14 14 C 1.53005 * 109.47247 * 184.84474 * 13 10 9 15 15 C 1.50700 * 109.46897 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00447 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99700 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99938 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47183 * 89.99911 * 19 17 15 21 21 H 1.48507 * 109.46665 * 209.99599 * 19 17 15 22 22 H 1.48504 * 109.47015 * 329.99543 * 19 17 15 23 23 C 1.50702 * 109.46864 * 174.64125 * 7 2 1 24 24 C 1.38242 * 120.00135 * 279.72238 * 23 7 2 25 25 C 1.38227 * 120.00243 * 179.81242 * 24 23 7 26 26 C 1.38245 * 119.99944 * 0.39884 * 25 24 23 27 27 C 1.38235 * 119.99498 * 359.85375 * 26 25 24 28 28 C 1.38231 * 120.00442 * 359.95850 * 27 26 25 29 29 H 1.08999 * 109.47110 * 304.66948 * 1 2 3 30 30 H 1.08993 * 109.47104 * 64.67271 * 1 2 3 31 31 H 1.08998 * 109.46379 * 184.67169 * 1 2 3 32 32 H 0.96698 * 116.99988 * 179.72840 * 6 4 2 33 33 H 0.96999 * 119.99726 * 36.52319 * 9 7 2 34 34 H 1.09002 * 109.47279 * 304.84373 * 13 10 9 35 35 H 1.08999 * 109.47095 * 64.84355 * 13 10 9 36 36 H 1.09002 * 109.46899 * 300.00132 * 14 13 10 37 37 H 1.08999 * 109.47170 * 59.99927 * 14 13 10 38 38 H 0.96996 * 119.99729 * 179.97438 * 18 17 15 39 39 H 1.07999 * 119.99348 * 0.02562 * 24 23 7 40 40 H 1.07994 * 120.00472 * 180.23500 * 25 24 23 41 41 H 1.07992 * 119.99896 * 179.83414 * 26 25 24 42 42 H 1.07999 * 119.99762 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00179 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 1.2473 -1.1701 2.0255 6 8 3.3521 -0.8281 1.4456 7 6 2.0400 -0.7211 -1.2493 8 1 1.7572 -1.7727 -1.2027 9 7 1.4493 -0.1089 -2.4420 10 16 1.0308 -1.0531 -3.7364 11 8 0.5401 -0.1303 -4.6992 12 8 2.1921 -1.8311 -3.9927 13 6 -0.3135 -2.1013 -3.1163 14 6 -0.7107 -3.1121 -4.1941 15 6 -1.8272 -3.9833 -3.6787 16 1 -2.2144 -3.8316 -2.6820 17 6 -2.3536 -4.9748 -4.4793 18 7 -1.8817 -5.1599 -5.6928 19 14 -3.7379 -6.0542 -3.8407 20 1 -5.0446 -5.4336 -4.1763 21 1 -3.6505 -7.3959 -4.4714 22 1 -3.6190 -6.1914 -2.3668 23 6 3.5412 -0.6072 -1.3174 24 6 4.1256 0.5507 -1.7959 25 6 5.5025 0.6567 -1.8547 26 6 6.2952 -0.3983 -1.4428 27 6 5.7108 -1.5581 -0.9692 28 6 4.3338 -1.6626 -0.9068 29 1 -0.3633 0.5846 0.8452 30 1 -0.3633 0.4396 -0.9288 31 1 -0.3632 -1.0243 0.0837 32 1 3.6263 -1.2885 2.2505 33 1 1.3032 0.8495 -2.4734 34 1 0.0214 -2.6328 -2.2256 35 1 -1.1733 -1.4796 -2.8667 36 1 -1.0457 -2.5806 -5.0849 37 1 0.1491 -3.7337 -4.4438 38 1 -2.2518 -5.8576 -6.2559 39 1 3.5062 1.3738 -2.1204 40 1 5.9591 1.5626 -2.2249 41 1 7.3710 -0.3165 -1.4912 42 1 6.3300 -2.3825 -0.6478 43 1 3.8772 -2.5689 -0.5372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275007953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -174.592085 kcal Electronic energy + Delta-G solvation = -28518.132148 eV Core-core repulsion = 24460.967028 eV Total energy + Delta-G solvation = -4057.165120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63728 -40.08955 -38.16333 -37.63627 -37.02858 -36.97047 -35.88900 -33.16186 -33.02545 -31.85327 -31.54928 -27.59949 -27.23430 -25.21273 -23.75639 -23.30352 -22.44198 -21.22218 -20.40330 -19.30160 -18.95016 -18.38370 -18.04071 -17.70513 -17.24878 -16.95846 -16.67605 -16.51240 -16.12221 -15.95106 -15.32269 -15.03129 -14.76947 -14.47719 -14.37583 -14.14493 -13.85198 -13.72776 -13.58630 -13.23439 -13.20067 -13.11415 -13.02955 -12.92627 -12.78397 -12.63654 -12.41766 -12.28093 -12.23582 -12.08232 -12.06770 -11.77273 -11.73960 -11.57977 -11.18988 -10.63856 -10.55078 -9.63677 -9.51187 -8.25439 -6.38851 -0.72463 0.53959 0.66903 1.17196 1.41261 1.42467 1.53580 1.76046 2.22438 2.38339 2.78849 2.97081 3.08337 3.25353 3.49761 3.66358 3.78325 3.91287 4.05995 4.12982 4.20237 4.25345 4.32380 4.39066 4.53644 4.56891 4.76133 4.76663 4.86900 4.90757 5.00379 5.19239 5.26816 5.28622 5.29403 5.33087 5.66812 5.68236 5.69537 5.74917 5.78216 6.06570 6.08353 6.24917 6.74955 7.04584 7.31323 8.86770 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003650 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.468737 B = 7669.816812 C = 8503.061620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 H 0.144 0.856 4 C 0.491 3.509 5 O -0.544 6.544 6 O -0.497 6.497 7 C 0.204 3.796 8 H 0.092 0.908 9 N -1.094 6.094 10 S 2.617 3.383 11 O -0.992 6.992 12 O -0.987 6.987 13 C -0.592 4.592 14 C 0.022 3.978 15 C -0.537 4.537 16 H 0.075 0.925 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.422 0.578 33 H 0.432 0.568 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 14.047 15.737 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.162 0.838 4 C 0.334 3.666 5 O -0.434 6.434 6 O -0.309 6.309 7 C 0.096 3.904 8 H 0.110 0.890 9 N -0.854 5.854 10 S 2.714 3.286 11 O -0.982 6.982 12 O -0.977 6.977 13 C -0.724 4.724 14 C -0.017 4.017 15 C -0.576 4.576 16 H 0.093 0.907 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.116 4.116 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.283 0.717 33 H 0.270 0.730 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.605 13.901 14.578 24.308 hybrid contribution -0.934 -1.000 0.798 1.584 sum 12.671 12.900 15.376 23.736 Atomic orbital electron populations 1.21884 0.90783 1.03772 1.04361 1.21388 0.98308 1.02149 0.87982 0.83847 1.23286 0.80468 0.75981 0.86911 1.90741 1.57954 1.46826 1.47910 1.84691 1.24460 1.72868 1.48858 1.19515 0.89613 0.97434 0.83873 0.89012 1.55365 1.77690 1.21206 1.31152 1.04625 0.75861 0.74515 0.73632 1.93519 1.82928 1.62487 1.59286 1.93540 1.47396 1.72877 1.83863 1.30404 1.18153 1.13194 1.10654 1.18801 0.97220 0.93265 0.92432 1.21510 1.18400 1.16297 1.01396 0.90650 1.26072 0.99939 0.99032 0.95017 1.70097 1.43803 1.33796 1.09618 0.85367 0.78702 0.77529 0.79005 1.19573 1.20895 1.18290 1.20014 0.94311 0.95486 1.00798 1.21102 0.95518 0.97560 0.98864 1.21384 0.93709 0.99796 1.00334 1.21431 1.00772 0.93524 0.98555 1.21294 0.94586 0.98603 1.00207 1.21003 0.94395 0.97700 0.98472 0.90559 0.88964 0.92411 0.71728 0.73013 0.84341 0.83455 0.97575 0.97418 0.92431 0.84816 0.84426 0.84436 0.84698 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.40 71.98 0.60 -1.82 16 2 C -0.08 -1.20 2.53 -11.54 -0.03 -1.23 16 3 H 0.14 1.46 8.14 -2.38 -0.02 1.45 16 4 C 0.49 8.91 7.58 71.24 0.54 9.45 16 5 O -0.54 -13.51 16.68 21.97 0.37 -13.14 16 6 O -0.50 -6.75 10.26 -51.37 -0.53 -7.28 16 7 C 0.20 4.10 1.85 44.24 0.08 4.18 16 8 H 0.09 1.99 7.00 -2.39 -0.02 1.97 16 9 N -1.09 -23.25 3.62 -172.52 -0.62 -23.88 16 10 S 2.62 87.86 5.37 -56.49 -0.30 87.56 16 11 O -0.99 -38.81 18.08 -127.65 -2.31 -41.12 16 12 O -0.99 -40.20 17.80 -127.65 -2.27 -42.47 16 13 C -0.59 -21.37 5.95 71.98 0.43 -20.94 16 14 C 0.02 1.11 4.98 29.85 0.15 1.26 16 15 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 16 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 18 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 19 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 C -0.10 -2.24 4.00 -19.86 -0.08 -2.32 16 24 C -0.11 -2.21 9.33 22.27 0.21 -2.00 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 26 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 27 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 28 C -0.10 -2.10 7.58 22.27 0.17 -1.93 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.20 7.24 -2.39 -0.02 1.19 16 31 H 0.06 1.14 7.97 -2.39 -0.02 1.12 16 32 H 0.42 2.67 9.10 -74.06 -0.67 1.99 16 33 H 0.43 6.34 8.46 -96.75 -0.82 5.52 16 34 H 0.14 4.36 7.39 -2.39 -0.02 4.35 16 35 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 39 H 0.13 2.06 7.51 -2.91 -0.02 2.04 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.12 2.41 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -82.35 376.49 -0.37 -82.72 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.45 Total: 19.33 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 3.44 Total: -50.70 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -0.34 Total: -80.13 kcal Atomic # 8 Polarization: -99.26 SS G_CDS: -4.74 Total: -104.00 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 87.86 SS G_CDS: -0.30 Total: 87.56 kcal Total: -82.35 -0.37 -82.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.874 kcal (2) G-P(sol) polarization free energy of solvation -82.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds