Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47084 * 2 1 4 4 C 1.50702 * 109.47381 * 239.99063 * 2 1 3 5 5 O 1.20819 * 119.99870 * 326.15311 * 4 2 1 6 6 O 1.34230 * 119.99645 * 146.14562 * 4 2 1 7 7 C 1.53010 * 109.46768 * 119.99475 * 2 1 3 8 8 H 1.08999 * 109.46949 * 55.64726 * 7 2 1 9 9 N 1.46502 * 109.46928 * 175.64414 * 7 2 1 10 10 S 1.65601 * 119.99698 * 217.27134 * 9 7 2 11 11 O 1.42092 * 104.27948 * 307.74749 * 10 9 7 12 12 O 1.42101 * 104.27518 * 179.88687 * 10 9 7 13 13 C 1.81398 * 104.44856 * 63.82071 * 10 9 7 14 14 C 1.52997 * 109.47132 * 175.58954 * 13 10 9 15 15 C 1.50707 * 109.47144 * 179.97438 * 14 13 10 16 16 H 1.07993 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99866 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47024 * 89.99556 * 19 17 15 21 21 H 1.48496 * 109.47208 * 209.99746 * 19 17 15 22 22 H 1.48505 * 109.46803 * 329.99904 * 19 17 15 23 23 C 1.50701 * 109.46897 * 295.64675 * 7 2 1 24 24 C 1.38242 * 119.99773 * 279.72234 * 23 7 2 25 25 C 1.38232 * 119.99782 * 179.81356 * 24 23 7 26 26 C 1.38239 * 120.00058 * 0.39804 * 25 24 23 27 27 C 1.38232 * 119.99723 * 359.85662 * 26 25 24 28 28 C 1.38229 * 120.00027 * 100.00428 * 23 7 2 29 29 H 1.08994 * 109.47753 * 300.00410 * 1 2 3 30 30 H 1.09004 * 109.46957 * 60.00803 * 1 2 3 31 31 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 32 32 H 0.96701 * 116.99834 * 184.84751 * 6 4 2 33 33 H 0.97001 * 119.99926 * 37.27306 * 9 7 2 34 34 H 1.09001 * 109.46938 * 295.58441 * 13 10 9 35 35 H 1.08997 * 109.47767 * 55.58373 * 13 10 9 36 36 H 1.08994 * 109.47082 * 299.99785 * 14 13 10 37 37 H 1.09000 * 109.47299 * 59.99891 * 14 13 10 38 38 H 0.97004 * 120.00274 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.99762 * 0.02562 * 24 23 7 40 40 H 1.07999 * 119.99926 * 180.23518 * 25 24 23 41 41 H 1.07997 * 119.99840 * 179.82946 * 26 25 24 42 42 H 1.08008 * 119.99540 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00367 * 359.97134 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 8 1.4145 -1.6450 -1.6829 6 8 3.1663 -0.3053 -1.8234 7 6 2.0400 -0.7212 1.2494 8 1 1.6143 -1.7238 1.2893 9 7 3.5012 -0.8127 1.1982 10 16 4.2658 -2.1709 1.7579 11 8 3.7441 -2.3524 3.0670 12 8 5.6464 -1.9067 1.5495 13 6 3.6981 -3.4961 0.6569 14 6 4.4255 -4.7959 1.0062 15 6 3.9535 -5.8971 0.0919 16 1 3.2088 -5.6905 -0.6624 17 6 4.4723 -7.1682 0.2186 18 7 5.3795 -7.4196 1.1370 19 14 3.8877 -8.5329 -0.9150 20 1 4.7458 -8.5718 -2.1263 21 1 3.9722 -9.8352 -0.2065 22 1 2.4803 -8.2765 -1.3135 23 6 1.6275 0.0489 2.4774 24 6 2.3503 1.1593 2.8720 25 6 1.9698 1.8679 3.9962 26 6 0.8713 1.4615 4.7305 27 6 0.1518 0.3481 4.3388 28 6 0.5300 -0.3584 3.2124 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.4107 -0.7442 -2.6497 33 1 4.0208 -0.0778 0.8364 34 1 2.6243 -3.6362 0.7806 35 1 3.9125 -3.2263 -0.3772 36 1 5.4994 -4.6559 0.8825 37 1 4.2110 -5.0658 2.0402 38 1 5.7442 -8.3140 1.2264 39 1 3.2103 1.4750 2.3000 40 1 2.5322 2.7376 4.3023 41 1 0.5756 2.0135 5.6103 42 1 -0.7062 0.0303 4.9128 43 1 -0.0322 -1.2282 2.9065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275007955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -152.175373 kcal Electronic energy + Delta-G solvation = -28573.563055 eV Core-core repulsion = 24517.369997 eV Total energy + Delta-G solvation = -4056.193058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77312 -39.48241 -36.78946 -36.48895 -36.12075 -35.45230 -33.89833 -32.63142 -31.17860 -31.00399 -30.72588 -26.16942 -25.61797 -24.90054 -22.74507 -21.67377 -21.64329 -20.35760 -19.04143 -18.36831 -17.58582 -17.31244 -16.77159 -16.58455 -16.35673 -15.67108 -15.39939 -15.18426 -14.95140 -14.57388 -14.49745 -13.85158 -13.60354 -13.48532 -13.43670 -13.12337 -12.80033 -12.60569 -12.50528 -12.30279 -11.77674 -11.66093 -11.63688 -11.61413 -11.52446 -11.47383 -11.32169 -11.12405 -11.06691 -10.95489 -10.65381 -10.41860 -10.39306 -9.89950 -9.60568 -9.11030 -8.98537 -8.84307 -8.49303 -6.11360 -4.16682 0.71370 1.19398 1.32665 2.05750 2.83566 3.00249 3.27391 3.33547 3.37280 3.66505 4.14949 4.35694 4.38867 4.44868 4.54709 4.67307 4.73234 4.86144 4.91303 5.02505 5.03934 5.20402 5.23843 5.30870 5.39928 5.43936 5.56307 5.60414 5.64123 5.77136 5.84236 5.87757 5.96410 6.34511 6.39604 6.41388 6.46301 6.50018 6.88636 6.96374 7.29289 7.35195 7.76209 7.82315 8.18380 8.86957 9.48146 10.99681 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003784 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.055148 B = 7397.888485 C = 8154.003340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.111 0.889 4 C 0.481 3.519 5 O -0.501 6.501 6 O -0.514 6.514 7 C 0.206 3.794 8 H 0.103 0.897 9 N -1.123 6.123 10 S 2.586 3.414 11 O -0.957 6.957 12 O -0.962 6.962 13 C -0.589 4.589 14 C 0.030 3.970 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.091 4.091 24 C -0.098 4.098 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.100 4.100 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.413 0.587 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 21.374 0.032 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.129 0.871 4 C 0.322 3.678 5 O -0.388 6.388 6 O -0.326 6.326 7 C 0.098 3.902 8 H 0.121 0.879 9 N -0.878 5.878 10 S 2.684 3.316 11 O -0.947 6.947 12 O -0.952 6.952 13 C -0.723 4.723 14 C -0.009 4.009 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.119 4.119 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.272 0.728 33 H 0.251 0.749 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.319 21.004 1.188 23.432 hybrid contribution -0.147 -0.982 -1.812 2.066 sum -10.466 20.022 -0.624 22.601 Atomic orbital electron populations 1.21804 0.90594 1.04372 1.03359 1.21351 0.98504 1.01337 0.89303 0.87054 1.23260 0.77791 0.81891 0.84823 1.90774 1.56698 1.27204 1.64125 1.84506 1.41333 1.64715 1.42083 1.19512 0.80495 0.99613 0.90567 0.87870 1.56089 1.13543 1.36254 1.81932 1.05838 0.74230 0.75146 0.76415 1.93571 1.80293 1.85388 1.35430 1.93562 1.31176 1.83586 1.86881 1.30471 1.11518 1.15854 1.14437 1.18947 0.95506 0.87844 0.98554 1.21001 1.23967 0.93339 1.17526 0.91995 1.25057 0.94904 0.98834 0.95630 1.69956 1.28118 1.21756 1.33071 0.86473 0.79232 0.81084 0.80552 1.20473 1.20990 1.19696 1.19920 0.96259 0.96339 0.96740 1.20909 0.98974 0.94729 0.97031 1.21113 0.97277 1.00088 0.95569 1.21161 0.95814 0.97099 0.99559 1.21110 1.00157 0.95704 0.96749 1.21042 0.96385 0.99446 0.95005 0.90175 0.91543 0.90514 0.72807 0.74873 0.86390 0.86338 0.94725 0.94933 0.92542 0.86048 0.86106 0.86236 0.85918 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.54 37.16 0.32 -0.82 16 2 C -0.08 -0.76 2.50 -91.77 -0.23 -0.99 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.48 5.38 6.81 36.01 0.25 5.63 16 5 O -0.50 -7.30 17.01 -18.74 -0.32 -7.62 16 6 O -0.51 -4.71 13.42 -39.26 -0.53 -5.24 16 7 C 0.21 2.34 1.87 -69.08 -0.13 2.21 16 8 H 0.10 1.22 7.04 -51.93 -0.37 0.86 16 9 N -1.12 -14.32 4.11 -5.88 -0.02 -14.35 16 10 S 2.59 46.82 5.37 -107.50 -0.58 46.25 16 11 O -0.96 -19.84 17.84 -57.54 -1.03 -20.87 16 12 O -0.96 -20.12 18.08 -57.54 -1.04 -21.16 16 13 C -0.59 -11.67 5.83 37.16 0.22 -11.45 16 14 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.09 -1.01 4.21 -104.62 -0.44 -1.45 16 24 C -0.10 -1.03 9.33 -39.58 -0.37 -1.40 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 28 C -0.10 -1.07 8.75 -39.59 -0.35 -1.42 16 29 H 0.08 0.55 6.74 -51.93 -0.35 0.20 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.68 7.85 -51.93 -0.41 0.28 16 32 H 0.41 2.52 9.10 45.56 0.41 2.93 16 33 H 0.42 4.35 8.53 -34.48 -0.29 4.06 16 34 H 0.12 2.15 7.54 -51.92 -0.39 1.76 16 35 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 36 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 1.09 7.49 -52.49 -0.39 0.70 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -38.06 380.77 -9.67 -47.74 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.13 Total: 5.99 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.48 Total: -27.02 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.71 Total: -40.33 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -2.91 Total: -54.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.58 Total: 46.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.06 -9.67 -47.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.440 kcal (2) G-P(sol) polarization free energy of solvation -38.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds