Wall clock time and date at job start Sat Apr 11 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47084 * 2 1 4 4 C 1.50702 * 109.47381 * 239.99063 * 2 1 3 5 5 O 1.20819 * 119.99870 * 326.15311 * 4 2 1 6 6 O 1.34230 * 119.99645 * 146.14562 * 4 2 1 7 7 C 1.53010 * 109.46768 * 119.99475 * 2 1 3 8 8 H 1.08999 * 109.46949 * 55.64726 * 7 2 1 9 9 N 1.46502 * 109.46928 * 175.64414 * 7 2 1 10 10 S 1.65601 * 119.99698 * 217.27134 * 9 7 2 11 11 O 1.42092 * 104.27948 * 307.74749 * 10 9 7 12 12 O 1.42101 * 104.27518 * 179.88687 * 10 9 7 13 13 C 1.81398 * 104.44856 * 63.82071 * 10 9 7 14 14 C 1.52997 * 109.47132 * 175.58954 * 13 10 9 15 15 C 1.50707 * 109.47144 * 179.97438 * 14 13 10 16 16 H 1.07993 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99866 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47024 * 89.99556 * 19 17 15 21 21 H 1.48496 * 109.47208 * 209.99746 * 19 17 15 22 22 H 1.48505 * 109.46803 * 329.99904 * 19 17 15 23 23 C 1.50701 * 109.46897 * 295.64675 * 7 2 1 24 24 C 1.38242 * 119.99773 * 279.72234 * 23 7 2 25 25 C 1.38232 * 119.99782 * 179.81356 * 24 23 7 26 26 C 1.38239 * 120.00058 * 0.39804 * 25 24 23 27 27 C 1.38232 * 119.99723 * 359.85662 * 26 25 24 28 28 C 1.38229 * 120.00027 * 100.00428 * 23 7 2 29 29 H 1.08994 * 109.47753 * 300.00410 * 1 2 3 30 30 H 1.09004 * 109.46957 * 60.00803 * 1 2 3 31 31 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 32 32 H 0.96701 * 116.99834 * 184.84751 * 6 4 2 33 33 H 0.97001 * 119.99926 * 37.27306 * 9 7 2 34 34 H 1.09001 * 109.46938 * 295.58441 * 13 10 9 35 35 H 1.08997 * 109.47767 * 55.58373 * 13 10 9 36 36 H 1.08994 * 109.47082 * 299.99785 * 14 13 10 37 37 H 1.09000 * 109.47299 * 59.99891 * 14 13 10 38 38 H 0.97004 * 120.00274 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.99762 * 0.02562 * 24 23 7 40 40 H 1.07999 * 119.99926 * 180.23518 * 25 24 23 41 41 H 1.07997 * 119.99840 * 179.82946 * 26 25 24 42 42 H 1.08008 * 119.99540 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00367 * 359.97134 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 8 1.4145 -1.6450 -1.6829 6 8 3.1663 -0.3053 -1.8234 7 6 2.0400 -0.7212 1.2494 8 1 1.6143 -1.7238 1.2893 9 7 3.5012 -0.8127 1.1982 10 16 4.2658 -2.1709 1.7579 11 8 3.7441 -2.3524 3.0670 12 8 5.6464 -1.9067 1.5495 13 6 3.6981 -3.4961 0.6569 14 6 4.4255 -4.7959 1.0062 15 6 3.9535 -5.8971 0.0919 16 1 3.2088 -5.6905 -0.6624 17 6 4.4723 -7.1682 0.2186 18 7 5.3795 -7.4196 1.1370 19 14 3.8877 -8.5329 -0.9150 20 1 4.7458 -8.5718 -2.1263 21 1 3.9722 -9.8352 -0.2065 22 1 2.4803 -8.2765 -1.3135 23 6 1.6275 0.0489 2.4774 24 6 2.3503 1.1593 2.8720 25 6 1.9698 1.8679 3.9962 26 6 0.8713 1.4615 4.7305 27 6 0.1518 0.3481 4.3388 28 6 0.5300 -0.3584 3.2124 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.4107 -0.7442 -2.6497 33 1 4.0208 -0.0778 0.8364 34 1 2.6243 -3.6362 0.7806 35 1 3.9125 -3.2263 -0.3772 36 1 5.4994 -4.6559 0.8825 37 1 4.2110 -5.0658 2.0402 38 1 5.7442 -8.3140 1.2264 39 1 3.2103 1.4750 2.3000 40 1 2.5322 2.7376 4.3023 41 1 0.5756 2.0135 5.6103 42 1 -0.7062 0.0303 4.9128 43 1 -0.0322 -1.2282 2.9065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275007955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:08 Heat of formation + Delta-G solvation = -180.252323 kcal Electronic energy + Delta-G solvation = -28574.780563 eV Core-core repulsion = 24517.369997 eV Total energy + Delta-G solvation = -4057.410566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62866 -40.26933 -38.22230 -37.48501 -37.08692 -37.00062 -35.94759 -33.55326 -33.18953 -31.72776 -31.50907 -27.65675 -26.97063 -25.71533 -23.79004 -23.34346 -22.41998 -21.18659 -20.41404 -19.37289 -19.02246 -18.51522 -18.02517 -17.65827 -17.42432 -17.02813 -16.67370 -16.53626 -16.26805 -15.95956 -15.40006 -15.16801 -14.63420 -14.50657 -14.36564 -14.18647 -14.01564 -13.80989 -13.59117 -13.46862 -13.24528 -13.17356 -13.03434 -12.97357 -12.84091 -12.62511 -12.48804 -12.33842 -12.26057 -12.21257 -12.12870 -11.81925 -11.80176 -11.56158 -11.23633 -10.67740 -10.63343 -9.72342 -9.61231 -8.28935 -6.42955 -0.79631 0.43011 0.58977 1.18679 1.38191 1.39875 1.51485 1.70263 2.09888 2.35482 2.69032 2.91499 3.04202 3.16997 3.58881 3.64727 3.73810 3.79533 3.95868 4.03789 4.15376 4.24254 4.29804 4.37288 4.48887 4.50938 4.67323 4.70852 4.82745 4.86360 4.96481 5.12601 5.20643 5.21844 5.23144 5.26639 5.62718 5.64762 5.65373 5.69977 5.72159 6.00035 6.03484 6.17808 6.69664 6.99220 7.27180 8.83297 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003784 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.055148 B = 7397.888485 C = 8154.003340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 H 0.138 0.862 4 C 0.482 3.518 5 O -0.540 6.540 6 O -0.509 6.509 7 C 0.201 3.799 8 H 0.095 0.905 9 N -1.102 6.102 10 S 2.618 3.382 11 O -0.983 6.983 12 O -0.990 6.990 13 C -0.592 4.592 14 C 0.025 3.975 15 C -0.540 4.540 16 H 0.069 0.931 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.117 4.117 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.426 0.574 33 H 0.431 0.569 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 22.986 -0.637 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.156 0.844 4 C 0.325 3.675 5 O -0.430 6.430 6 O -0.322 6.322 7 C 0.094 3.906 8 H 0.113 0.887 9 N -0.863 5.863 10 S 2.714 3.286 11 O -0.972 6.972 12 O -0.981 6.981 13 C -0.723 4.723 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.571 5.571 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.287 0.713 33 H 0.269 0.731 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.564 22.629 0.496 25.417 hybrid contribution 0.238 -1.370 -1.563 2.092 sum -11.327 21.259 -1.068 24.112 Atomic orbital electron populations 1.21808 0.89644 1.03899 1.04514 1.21400 0.99200 1.02057 0.87094 0.84364 1.23670 0.77614 0.81212 0.85044 1.90765 1.57882 1.28947 1.65362 1.84484 1.40378 1.64562 1.42824 1.19692 0.78868 0.99864 0.92207 0.88743 1.55526 1.14588 1.34570 1.81614 1.04589 0.73312 0.75226 0.75446 1.93536 1.80662 1.86135 1.36897 1.93516 1.33330 1.84114 1.87094 1.30385 1.11707 1.14127 1.16083 1.18778 0.94758 0.90803 0.97039 1.21444 1.24118 0.94354 1.17950 0.91262 1.26067 0.94875 1.01720 0.97217 1.70089 1.29465 1.22600 1.34928 0.85346 0.79201 0.77524 0.78418 1.19445 1.20441 1.18541 1.19910 0.96955 0.96875 0.96815 1.21158 0.99400 0.94750 0.97720 1.21440 0.97507 1.00620 0.95221 1.21510 0.95478 0.96973 1.00121 1.21406 1.00813 0.95764 0.96552 1.21261 0.96735 1.00014 0.95591 0.88915 0.90425 0.91855 0.71265 0.73072 0.84999 0.84766 0.97217 0.97409 0.92267 0.84859 0.84101 0.84028 0.84167 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.54 71.98 0.61 -1.39 16 2 C -0.08 -1.24 2.50 -11.54 -0.03 -1.27 16 3 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.48 10.02 6.81 71.24 0.49 10.51 16 5 O -0.54 -15.30 17.01 21.99 0.37 -14.92 16 6 O -0.51 -8.31 13.42 -51.42 -0.69 -9.00 16 7 C 0.20 4.29 1.87 44.25 0.08 4.37 16 8 H 0.09 2.19 7.04 -2.39 -0.02 2.17 16 9 N -1.10 -26.72 4.11 -172.51 -0.71 -27.42 16 10 S 2.62 94.97 5.37 -56.49 -0.30 94.66 16 11 O -0.98 -41.08 17.84 -127.65 -2.28 -43.36 16 12 O -0.99 -41.62 18.08 -127.65 -2.31 -43.93 16 13 C -0.59 -23.69 5.83 71.98 0.42 -23.27 16 14 C 0.03 1.35 4.98 29.85 0.15 1.50 16 15 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 16 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 19 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 C -0.10 -2.16 4.21 -19.87 -0.08 -2.24 16 24 C -0.11 -2.12 9.33 22.27 0.21 -1.91 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 26 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.12 -2.37 8.75 22.27 0.19 -2.17 16 29 H 0.09 1.08 6.74 -2.39 -0.02 1.07 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 32 H 0.43 4.46 9.10 -74.06 -0.67 3.78 16 33 H 0.43 8.13 8.53 -96.74 -0.83 7.30 16 34 H 0.13 4.85 7.54 -2.39 -0.02 4.83 16 35 H 0.13 4.87 8.14 -2.39 -0.02 4.85 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.13 2.07 7.49 -2.91 -0.02 2.05 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.13 2.36 8.04 -2.91 -0.02 2.34 16 Total: -1.00 -82.94 380.77 -0.65 -83.59 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -0.45 Total: 22.84 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 3.41 Total: -51.81 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -0.42 Total: -84.35 kcal Atomic # 8 Polarization: -106.31 SS G_CDS: -4.90 Total: -111.21 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 94.97 SS G_CDS: -0.30 Total: 94.66 kcal Total: -82.94 -0.65 -83.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.664 kcal (2) G-P(sol) polarization free energy of solvation -82.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds