Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47681 * 2 1 4 4 C 1.46500 * 119.99810 * 270.00051 * 3 2 1 5 5 C 1.50697 * 109.46860 * 269.99375 * 4 3 2 6 6 H 1.07997 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00034 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00308 * 180.02562 * 7 5 4 9 9 Si 1.86811 * 119.99773 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46861 * 89.99418 * 9 7 5 11 11 H 1.48499 * 109.47079 * 209.99772 * 9 7 5 12 12 H 1.48501 * 109.46767 * 329.99762 * 9 7 5 13 13 C 1.34773 * 120.00023 * 89.99460 * 3 2 1 14 14 O 1.21276 * 120.00228 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99995 * 0.02562 * 13 3 2 16 16 O 1.42904 * 109.47159 * 179.97438 * 15 13 3 17 17 C 1.35898 * 116.99940 * 179.97438 * 16 15 13 18 18 C 1.38747 * 120.05546 * 0.02562 * 17 16 15 19 19 C 1.38125 * 119.94590 * 179.97438 * 18 17 16 20 20 C 1.38289 * 120.05159 * 359.97438 * 19 18 17 21 21 C 1.38243 * 120.11362 * 359.97438 * 20 19 18 22 22 C 1.38163 * 120.05442 * 0.02562 * 21 20 19 23 23 S 1.76201 * 120.02752 * 179.97438 * 22 21 20 24 24 C 1.81396 * 104.45319 * 115.01771 * 23 22 21 25 25 O 1.42096 * 104.27821 * 231.09247 * 23 22 21 26 26 O 1.42101 * 104.28050 * 358.94385 * 23 22 21 27 27 H 1.09009 * 109.46907 * 59.99918 * 1 2 3 28 28 H 1.08997 * 109.47838 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47231 * 300.00423 * 1 2 3 30 30 H 1.08998 * 109.47231 * 239.99577 * 2 1 3 31 31 H 1.09009 * 109.46907 * 120.00082 * 2 1 3 32 32 H 1.08992 * 109.47255 * 29.99787 * 4 3 2 33 33 H 1.09004 * 109.46968 * 150.00065 * 4 3 2 34 34 H 0.97004 * 119.99872 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47357 * 59.99584 * 15 13 3 36 36 H 1.08995 * 109.46759 * 299.99718 * 15 13 3 37 37 H 1.08000 * 120.03041 * 359.95195 * 18 17 16 38 38 H 1.07993 * 119.97844 * 179.72247 * 19 18 17 39 39 H 1.08004 * 119.94552 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.97523 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.46982 * 59.99645 * 24 23 22 42 42 H 1.08997 * 109.47352 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47083 * 300.00240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3427 1.2301 -1.0960 7 6 4.1493 2.3893 -2.8779 8 7 5.3912 2.1823 -3.2577 9 14 3.0130 3.4349 -3.9293 10 1 3.1165 4.8552 -3.5082 11 1 3.4060 3.3116 -5.3560 12 1 1.6133 2.9689 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6916 4.8143 18 6 1.6704 0.3949 4.9974 19 6 1.4956 -0.1007 6.2748 20 6 1.7777 0.6943 7.3706 21 6 2.2356 1.9862 7.1908 22 6 2.4121 2.4865 5.9151 23 16 2.9952 4.1335 5.6868 24 6 4.6130 3.9348 4.8908 25 8 2.0633 4.7133 4.7843 26 8 3.1475 4.6376 7.0067 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.5819 1.6876 -2.0283 33 1 2.0958 3.1410 -1.1384 34 1 5.7173 2.5727 -4.0837 35 1 2.6226 0.4186 2.5300 36 1 0.9444 1.0115 2.5301 37 1 1.4500 -0.2263 4.1419 38 1 1.1345 -1.1083 6.4179 39 1 1.6400 0.3052 8.3687 40 1 2.4548 2.6052 8.0483 41 1 4.4895 3.4116 3.9424 42 1 5.0518 4.9159 4.7096 43 1 5.2696 3.3572 5.5414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284987620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -99.523791 kcal Electronic energy + Delta-G solvation = -28115.342884 eV Core-core repulsion = 24061.432969 eV Total energy + Delta-G solvation = -4053.909914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68748 -39.19227 -37.65067 -36.87079 -35.83974 -35.52949 -32.83225 -31.79432 -30.69990 -30.42718 -29.39593 -29.06080 -27.03388 -23.67487 -23.15538 -23.03145 -21.94674 -19.48993 -18.69617 -18.49265 -17.24825 -17.08062 -16.80520 -16.48486 -16.16048 -15.96961 -15.67715 -15.11199 -15.10654 -14.54886 -14.50406 -14.05761 -13.67385 -13.57211 -13.28688 -13.05556 -12.99146 -12.84084 -12.51351 -12.42331 -12.30829 -11.99866 -11.94992 -11.86213 -11.85429 -11.57105 -11.33443 -11.07133 -11.00803 -10.82496 -10.63622 -10.56245 -10.21945 -9.68298 -9.61726 -9.18916 -8.69739 -8.64488 -7.89560 -6.14728 -4.14396 0.10727 0.60462 1.03982 2.50770 2.87040 3.07223 3.18656 3.26190 3.31916 3.34939 3.77263 3.83230 4.19865 4.34808 4.39872 4.52413 4.68013 4.73146 4.85721 4.87697 4.91949 4.94789 5.13419 5.17653 5.18903 5.22853 5.38445 5.40588 5.54622 5.69974 5.80335 5.80763 5.84219 6.01114 6.03547 6.25556 6.31670 6.58019 6.83284 6.90257 7.18513 7.53067 8.02701 8.38331 8.74275 8.87657 9.44985 10.98381 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.003336 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.662778 B = 8391.729772 C = 9601.014539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.508 6.508 15 C 0.039 3.961 16 O -0.285 6.285 17 C 0.223 3.777 18 C -0.230 4.230 19 C -0.027 4.027 20 C -0.182 4.182 21 C 0.013 3.987 22 C -0.691 4.691 23 S 2.504 3.496 24 C -0.645 4.645 25 O -0.918 6.918 26 O -0.951 6.951 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -7.767 19.263 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.293 3.707 14 O -0.383 6.383 15 C -0.039 4.039 16 O -0.195 6.195 17 C 0.175 3.825 18 C -0.249 4.249 19 C -0.045 4.045 20 C -0.201 4.201 21 C -0.006 4.006 22 C -0.777 4.777 23 S 2.682 3.318 24 C -0.795 4.795 25 O -0.915 6.915 26 O -0.948 6.948 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.885 -6.165 19.236 21.684 hybrid contribution -0.213 -0.804 -0.949 1.262 sum -8.098 -6.969 18.287 21.179 Atomic orbital electron populations 1.22267 0.96472 1.01838 1.02537 1.21530 0.93637 0.83658 1.03369 1.47857 1.64340 1.13474 1.06448 1.19716 0.97527 0.93550 0.79408 1.21293 0.95254 1.33254 1.07287 0.90716 1.24843 0.95010 0.95706 0.97321 1.69888 1.15129 1.44806 1.23571 0.86862 0.81405 0.81730 0.79769 1.19763 1.21026 1.19035 1.19602 0.79813 0.87181 0.84128 1.90757 1.43774 1.17227 1.86503 1.22875 1.02497 0.93201 0.85341 1.86171 1.80786 1.41185 1.11404 1.18453 0.88996 0.91392 0.83694 1.21384 1.08726 0.95551 0.99267 1.21252 0.92197 0.99227 0.91831 1.21190 1.04797 0.94772 0.99342 1.20874 0.90005 0.95076 0.94637 1.29860 1.24741 1.25989 0.97129 1.05068 0.77725 0.74011 0.74975 1.30149 1.21716 1.12372 1.15296 1.93646 1.58304 1.74091 1.65493 1.93535 1.87337 1.77332 1.36629 0.91830 0.91703 0.93003 0.89115 0.91637 0.94859 0.94280 0.92473 0.88690 0.88765 0.84404 0.84961 0.84958 0.83166 0.83947 0.84935 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.10 1.39 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.26 2.46 -175.06 -0.43 -11.69 16 4 C 0.22 5.11 4.23 -5.19 -0.02 5.09 16 5 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 6 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 9 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.51 9.97 7.75 -10.98 -0.09 9.88 16 14 O -0.51 -12.48 16.08 -14.35 -0.23 -12.71 16 15 C 0.04 0.54 3.77 36.01 0.14 0.68 16 16 O -0.28 -4.39 7.66 -45.52 -0.35 -4.74 16 17 C 0.22 2.86 6.62 -39.22 -0.26 2.60 16 18 C -0.23 -2.26 9.04 -39.43 -0.36 -2.62 16 19 C -0.03 -0.22 10.04 -39.60 -0.40 -0.61 16 20 C -0.18 -1.51 10.04 -39.56 -0.40 -1.90 16 21 C 0.01 0.13 9.50 -39.61 -0.38 -0.25 16 22 C -0.69 -8.51 5.59 -39.44 -0.22 -8.73 16 23 S 2.50 33.06 5.38 -107.50 -0.58 32.48 16 24 C -0.64 -7.00 10.73 101.05 1.08 -5.92 16 25 O -0.92 -16.35 17.23 -62.71 -1.08 -17.43 16 26 O -0.95 -13.37 16.74 -57.54 -0.96 -14.33 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.54 7.22 -51.93 -0.38 0.17 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.07 0.69 6.44 -51.92 -0.33 0.35 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.10 1.03 6.92 -51.93 -0.36 0.67 16 36 H 0.09 1.02 6.71 -51.93 -0.35 0.67 16 37 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.15 1.30 7.21 -52.49 -0.38 0.92 16 41 H 0.14 1.80 7.39 -51.92 -0.38 1.42 16 42 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -38.99 371.91 -8.68 -47.67 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.78 Total: -0.04 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.98 Total: -15.05 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.34 Total: -37.93 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.62 Total: -49.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 33.06 SS G_CDS: -0.58 Total: 32.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.99 -8.68 -47.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284987620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.849 kcal (2) G-P(sol) polarization free energy of solvation -38.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds