Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47156 * 2 1 4 4 C 1.46497 * 120.00467 * 270.00308 * 3 2 1 5 5 C 1.50702 * 109.46830 * 269.99976 * 4 3 2 6 6 H 1.07993 * 120.00399 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99736 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99739 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47237 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47010 * 210.00109 * 9 7 5 12 12 H 1.48508 * 109.47133 * 329.99723 * 9 7 5 13 13 C 1.34779 * 119.99887 * 90.00034 * 3 2 1 14 14 O 1.21284 * 120.00071 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99910 * 0.02562 * 13 3 2 16 16 S 1.81399 * 109.46917 * 180.02562 * 15 13 3 17 17 O 1.42098 * 110.54469 * 68.37442 * 16 15 13 18 18 O 1.42103 * 110.54412 * 291.62204 * 16 15 13 19 19 C 1.76206 * 104.44702 * 179.97438 * 16 15 13 20 20 C 1.38270 * 119.94429 * 270.25333 * 19 16 15 21 21 C 1.38138 * 120.05794 * 180.26125 * 20 19 16 22 22 C 1.38736 * 119.94337 * 359.46080 * 21 20 19 23 23 O 1.35893 * 120.05957 * 180.30421 * 22 21 20 24 24 C 1.42899 * 117.00392 * 180.02562 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28279 * 22 21 20 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46996 * 299.99776 * 1 2 3 28 28 H 1.08996 * 109.46779 * 59.99800 * 1 2 3 29 29 H 1.09005 * 109.46725 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47385 * 240.00320 * 2 1 3 31 31 H 1.08996 * 109.47290 * 120.00327 * 2 1 3 32 32 H 1.09005 * 109.46976 * 29.99254 * 4 3 2 33 33 H 1.08993 * 109.47825 * 149.99896 * 4 3 2 34 34 H 0.97006 * 120.00255 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47299 * 60.00007 * 15 13 3 36 36 H 1.09003 * 109.46779 * 299.99841 * 15 13 3 37 37 H 1.08004 * 119.97397 * 0.02562 * 20 19 16 38 38 H 1.08002 * 120.03311 * 179.74549 * 21 20 19 39 39 H 1.08992 * 109.47458 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.46729 * 299.99846 * 24 23 22 41 41 H 1.09001 * 109.47001 * 59.99870 * 24 23 22 42 42 H 1.07993 * 120.02463 * 180.02562 * 25 22 21 43 43 H 1.08006 * 119.96944 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 5.3913 2.1836 -3.2573 9 14 3.0124 3.4343 -3.9298 10 1 3.1146 4.8546 -3.5090 11 1 3.4059 3.3110 -5.3564 12 1 1.6129 2.9672 -3.7602 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9924 1.3059 2.4723 16 16 2.3844 2.4176 3.8511 17 8 1.4497 3.4861 3.9115 18 8 3.7828 2.6632 3.9115 19 6 2.0474 1.4641 5.2941 20 6 0.7841 1.4854 5.8559 21 6 0.5187 0.7431 6.9902 22 6 1.5180 -0.0331 7.5593 23 8 1.2578 -0.7691 8.6716 24 6 2.3342 -1.5440 9.2034 25 6 2.7832 -0.0570 6.9906 26 6 3.0449 0.6914 5.8593 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 5.7174 2.5742 -4.0832 35 1 2.6229 0.4187 2.5299 36 1 0.9445 1.0114 2.5302 37 1 0.0052 2.0860 5.4097 38 1 -0.4670 0.7633 7.4311 39 1 1.9926 -2.0821 10.0875 40 1 2.6735 -2.2578 8.4526 41 1 3.1577 -0.8836 9.4752 42 1 3.5625 -0.6607 7.4315 43 1 4.0298 0.6735 5.4164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289586813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -104.102960 kcal Electronic energy + Delta-G solvation = -27515.787974 eV Core-core repulsion = 23461.679492 eV Total energy + Delta-G solvation = -4054.108482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60066 -39.43089 -37.90507 -36.95337 -35.82976 -35.61972 -32.83772 -31.62865 -30.94881 -30.68591 -30.17782 -27.89160 -27.39365 -23.38787 -23.15096 -22.93681 -22.50300 -19.35856 -18.76510 -18.54135 -17.72385 -17.01535 -16.83627 -16.48834 -16.39044 -16.27046 -15.75513 -15.15467 -15.06337 -14.78368 -14.23605 -14.03942 -13.88153 -13.68347 -13.60811 -13.36681 -13.26495 -12.80455 -12.49690 -12.44811 -12.29426 -11.92612 -11.87370 -11.82186 -11.78311 -11.57152 -11.38076 -11.09626 -11.00916 -10.85754 -10.76471 -10.50495 -10.21254 -9.67955 -9.50885 -9.47226 -8.98995 -8.61387 -7.94345 -6.11164 -4.11123 -0.00040 0.59124 0.88917 2.66905 2.92537 2.96192 3.11392 3.28101 3.33559 3.36692 3.51619 4.04188 4.11013 4.29564 4.37512 4.40701 4.54552 4.58321 4.63820 4.79219 4.87083 4.96096 5.03957 5.04948 5.20357 5.21500 5.25739 5.41241 5.49765 5.56037 5.57189 5.76514 5.79805 5.84011 6.03072 6.20697 6.28208 6.55778 6.79337 6.84946 7.12421 7.54690 7.95132 8.37511 8.59739 8.91580 9.47734 11.01952 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.002696 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.089486 B =10384.088959 C =10579.998576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.576 5.576 4 C 0.213 3.787 5 C -0.534 4.534 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.534 3.466 14 O -0.534 6.534 15 C -0.651 4.651 16 S 2.537 3.463 17 O -0.924 6.924 18 O -0.919 6.919 19 C -0.703 4.703 20 C 0.015 3.985 21 C -0.173 4.173 22 C 0.177 3.823 23 O -0.313 6.313 24 C 0.022 3.978 25 C -0.230 4.230 26 C 0.019 3.981 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.138 0.862 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -11.461 21.967 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.306 5.306 4 C 0.093 3.907 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.318 3.682 14 O -0.412 6.412 15 C -0.780 4.780 16 S 2.712 3.288 17 O -0.921 6.921 18 O -0.916 6.916 19 C -0.789 4.789 20 C -0.003 4.003 21 C -0.192 4.192 22 C 0.130 3.870 23 O -0.225 6.225 24 C -0.072 4.072 25 C -0.249 4.249 26 C 0.000 4.000 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.156 0.844 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.753 -10.039 21.873 26.360 hybrid contribution -0.460 -0.715 -0.418 0.947 sum -11.213 -10.754 21.456 26.490 Atomic orbital electron populations 1.22255 0.96430 1.01897 1.02502 1.21561 0.93677 0.83422 1.03593 1.47824 1.62689 1.13542 1.06582 1.19809 0.97787 0.93658 0.79477 1.21287 0.95133 1.33439 1.07357 0.90548 1.24847 0.95030 0.95693 0.97322 1.69889 1.15069 1.44715 1.23542 0.86862 0.81358 0.81773 0.79781 1.19707 1.20999 1.19052 1.18912 0.79000 0.86315 0.83968 1.90832 1.46318 1.17407 1.86641 1.30851 1.13766 1.18823 1.14515 1.04494 0.75119 0.74910 0.74301 1.93535 1.64661 1.48199 1.85728 1.93561 1.30091 1.82426 1.85549 1.30798 1.02033 1.21240 1.24805 1.20827 0.94606 0.92359 0.92544 1.20558 0.99520 1.00624 0.98514 1.19352 0.93462 0.89016 0.85153 1.86106 1.39182 1.57404 1.39814 1.23181 0.89871 0.94741 0.99439 1.21377 0.96686 1.06361 1.00508 1.20829 0.97983 0.88668 0.92482 0.92884 0.91884 0.91652 0.89150 0.91090 0.94683 0.94063 0.92450 0.82302 0.82607 0.83189 0.84124 0.87802 0.92098 0.92109 0.84382 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.24 37.16 0.38 -1.58 16 2 C 0.10 1.45 5.93 -4.04 -0.02 1.43 16 3 N -0.58 -11.45 2.46 -175.06 -0.43 -11.88 16 4 C 0.21 5.11 4.23 -5.19 -0.02 5.09 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.75 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.53 10.71 7.69 -10.98 -0.08 10.63 16 14 O -0.53 -13.25 15.44 5.55 0.09 -13.17 16 15 C -0.65 -8.63 5.01 36.01 0.18 -8.45 16 16 S 2.54 38.51 4.29 -107.50 -0.46 38.05 16 17 O -0.92 -16.41 17.13 -57.55 -0.99 -17.39 16 18 O -0.92 -17.24 17.12 -57.55 -0.99 -18.23 16 19 C -0.70 -8.07 5.66 -39.56 -0.22 -8.30 16 20 C 0.02 0.16 9.46 -39.61 -0.37 -0.22 16 21 C -0.17 -1.58 9.99 -39.43 -0.39 -1.97 16 22 C 0.18 1.62 6.69 -39.21 -0.26 1.36 16 23 O -0.31 -2.54 10.50 -19.40 -0.20 -2.74 16 24 C 0.02 0.10 9.81 101.05 0.99 1.09 16 25 C -0.23 -2.02 9.04 -39.43 -0.36 -2.37 16 26 C 0.02 0.20 9.46 -39.61 -0.37 -0.18 16 27 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.35 8.07 -51.92 -0.42 0.93 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 33 H 0.04 1.06 6.85 -51.93 -0.36 0.70 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.16 1.57 7.40 -51.93 -0.38 1.18 16 36 H 0.16 1.40 7.19 -51.92 -0.37 1.03 16 37 H 0.15 1.26 7.57 -52.48 -0.40 0.86 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 41 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 42 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 43 H 0.15 1.37 7.57 -52.48 -0.40 0.97 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -39.95 373.66 -8.06 -48.01 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.81 Total: -1.41 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.00 Total: -16.93 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.34 Total: -38.56 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -2.09 Total: -51.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.46 Total: 38.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.95 -8.06 -48.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289586813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.093 kcal (2) G-P(sol) polarization free energy of solvation -39.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds