Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47156 * 2 1 4 4 C 1.46497 * 120.00467 * 270.00308 * 3 2 1 5 5 C 1.50702 * 109.46830 * 269.99976 * 4 3 2 6 6 H 1.07993 * 120.00399 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99736 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99739 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00124 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47237 * 89.99686 * 9 7 5 11 11 H 1.48499 * 109.47010 * 210.00109 * 9 7 5 12 12 H 1.48508 * 109.47133 * 329.99723 * 9 7 5 13 13 C 1.34779 * 119.99887 * 90.00034 * 3 2 1 14 14 O 1.21284 * 120.00071 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99910 * 0.02562 * 13 3 2 16 16 S 1.81399 * 109.46917 * 180.02562 * 15 13 3 17 17 O 1.42098 * 110.54469 * 68.37442 * 16 15 13 18 18 O 1.42103 * 110.54412 * 291.62204 * 16 15 13 19 19 C 1.76206 * 104.44702 * 179.97438 * 16 15 13 20 20 C 1.38270 * 119.94429 * 270.25333 * 19 16 15 21 21 C 1.38138 * 120.05794 * 180.26125 * 20 19 16 22 22 C 1.38736 * 119.94337 * 359.46080 * 21 20 19 23 23 O 1.35893 * 120.05957 * 180.30421 * 22 21 20 24 24 C 1.42899 * 117.00392 * 180.02562 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28279 * 22 21 20 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46996 * 299.99776 * 1 2 3 28 28 H 1.08996 * 109.46779 * 59.99800 * 1 2 3 29 29 H 1.09005 * 109.46725 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47385 * 240.00320 * 2 1 3 31 31 H 1.08996 * 109.47290 * 120.00327 * 2 1 3 32 32 H 1.09005 * 109.46976 * 29.99254 * 4 3 2 33 33 H 1.08993 * 109.47825 * 149.99896 * 4 3 2 34 34 H 0.97006 * 120.00255 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47299 * 60.00007 * 15 13 3 36 36 H 1.09003 * 109.46779 * 299.99841 * 15 13 3 37 37 H 1.08004 * 119.97397 * 0.02562 * 20 19 16 38 38 H 1.08002 * 120.03311 * 179.74549 * 21 20 19 39 39 H 1.08992 * 109.47458 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.46729 * 299.99846 * 24 23 22 41 41 H 1.09001 * 109.47001 * 59.99870 * 24 23 22 42 42 H 1.07993 * 120.02463 * 180.02562 * 25 22 21 43 43 H 1.08006 * 119.96944 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 5.3913 2.1836 -3.2573 9 14 3.0124 3.4343 -3.9298 10 1 3.1146 4.8546 -3.5090 11 1 3.4059 3.3110 -5.3564 12 1 1.6129 2.9672 -3.7602 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9924 1.3059 2.4723 16 16 2.3844 2.4176 3.8511 17 8 1.4497 3.4861 3.9115 18 8 3.7828 2.6632 3.9115 19 6 2.0474 1.4641 5.2941 20 6 0.7841 1.4854 5.8559 21 6 0.5187 0.7431 6.9902 22 6 1.5180 -0.0331 7.5593 23 8 1.2578 -0.7691 8.6716 24 6 2.3342 -1.5440 9.2034 25 6 2.7832 -0.0570 6.9906 26 6 3.0449 0.6914 5.8593 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 5.7174 2.5742 -4.0832 35 1 2.6229 0.4187 2.5299 36 1 0.9445 1.0114 2.5302 37 1 0.0052 2.0860 5.4097 38 1 -0.4670 0.7633 7.4311 39 1 1.9926 -2.0821 10.0875 40 1 2.6735 -2.2578 8.4526 41 1 3.1577 -0.8836 9.4752 42 1 3.5625 -0.6607 7.4315 43 1 4.0298 0.6735 5.4164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289586813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -135.453081 kcal Electronic energy + Delta-G solvation = -27517.147417 eV Core-core repulsion = 23461.679492 eV Total energy + Delta-G solvation = -4055.467925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23232 -40.99647 -38.56117 -38.22263 -37.30410 -36.96995 -34.91924 -32.39524 -32.30352 -31.61399 -31.29110 -29.18920 -28.30581 -24.62521 -24.28433 -24.05018 -23.56413 -20.62567 -19.87314 -19.46520 -19.14777 -18.78027 -17.88494 -17.69453 -17.60304 -16.91951 -16.79371 -16.65854 -16.21828 -15.81108 -15.76453 -14.98221 -14.86639 -14.75405 -14.60997 -14.52515 -14.26543 -14.03242 -13.90550 -13.70662 -13.41816 -13.21531 -13.16607 -13.14056 -12.89774 -12.58594 -12.49629 -12.33132 -12.16479 -12.05053 -12.00247 -11.92571 -11.75927 -11.73349 -11.15699 -10.84275 -10.20959 -9.68649 -9.59747 -8.35159 -6.40852 -1.12004 -0.20357 0.19249 1.31698 1.37358 1.43097 1.44218 1.83785 2.07830 2.19032 2.30044 2.40354 2.90028 2.99269 3.07400 3.29184 3.61571 3.75191 3.87546 4.03229 4.13617 4.24681 4.27033 4.37967 4.38735 4.40577 4.47515 4.60118 4.72082 4.74865 4.82224 4.84363 4.90926 4.97624 5.01199 5.03637 5.11886 5.39558 5.44110 5.51469 5.52128 6.17426 6.21536 6.42834 6.60973 7.01166 7.24036 8.81584 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.002696 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.089486 B =10384.088959 C =10579.998576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.582 5.582 4 C 0.218 3.782 5 C -0.540 4.540 6 H 0.033 0.967 7 C 0.011 3.989 8 N -0.943 5.943 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.234 1.234 13 C 0.517 3.483 14 O -0.596 6.596 15 C -0.632 4.632 16 S 2.529 3.471 17 O -0.963 6.963 18 O -0.972 6.972 19 C -0.698 4.698 20 C 0.010 3.990 21 C -0.175 4.175 22 C 0.177 3.823 23 O -0.322 6.322 24 C 0.011 3.989 25 C -0.227 4.227 26 C 0.007 3.993 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.198 0.802 36 H 0.207 0.793 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.165 0.835 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -13.963 23.576 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.034 4.034 3 N -0.311 5.311 4 C 0.096 3.904 5 C -0.578 4.578 6 H 0.051 0.949 7 C -0.187 4.187 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.157 1.157 13 C 0.304 3.696 14 O -0.479 6.479 15 C -0.762 4.762 16 S 2.712 3.288 17 O -0.961 6.961 18 O -0.969 6.969 19 C -0.789 4.789 20 C -0.009 4.009 21 C -0.195 4.195 22 C 0.130 3.870 23 O -0.234 6.234 24 C -0.083 4.083 25 C -0.246 4.246 26 C -0.012 4.012 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.215 0.785 36 H 0.224 0.776 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.183 0.817 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.619 -12.567 23.475 29.908 hybrid contribution 0.476 -0.116 -0.731 0.880 sum -13.143 -12.684 22.744 29.171 Atomic orbital electron populations 1.22228 0.93555 1.04157 1.02549 1.22010 0.96032 0.80346 1.04967 1.47947 1.62439 1.15527 1.05227 1.19478 0.95327 0.93347 0.82217 1.21544 0.96973 1.32489 1.06842 0.94904 1.25847 0.96739 0.97106 0.98998 1.70041 1.17354 1.46399 1.24489 0.85761 0.80652 0.78987 0.77866 1.20434 1.19847 1.15722 1.19911 0.77730 0.85988 0.85997 1.90801 1.48855 1.20376 1.87852 1.30738 1.17824 1.18514 1.09111 1.04057 0.73671 0.75561 0.75523 1.93479 1.64881 1.51059 1.86632 1.93497 1.32769 1.84018 1.86657 1.30044 1.03379 1.22174 1.23278 1.21021 0.94238 0.92624 0.93006 1.20811 1.00609 1.00032 0.98006 1.19540 0.93477 0.88677 0.85305 1.86110 1.40789 1.57352 1.39150 1.23510 0.89471 0.94890 1.00461 1.21627 0.97421 1.05907 0.99650 1.20998 0.97959 0.88965 0.93319 0.91422 0.93364 0.88204 0.90260 0.87442 0.92315 0.96052 0.92205 0.78471 0.77569 0.81995 0.82089 0.85825 0.90899 0.91365 0.81747 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.24 71.98 0.74 -2.40 16 2 C 0.09 2.29 5.93 86.38 0.51 2.80 16 3 N -0.58 -22.81 2.46 -826.15 -2.03 -24.84 16 4 C 0.22 10.56 4.23 85.63 0.36 10.92 16 5 C -0.54 -31.79 9.94 25.60 0.25 -31.54 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 7 C 0.01 0.68 5.47 84.66 0.46 1.14 16 8 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 9 Si 0.94 44.61 27.47 68.60 1.88 46.50 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 13 C 0.52 20.77 7.69 87.66 0.67 21.45 16 14 O -0.60 -30.99 15.44 -3.04 -0.05 -31.04 16 15 C -0.63 -15.56 5.01 71.24 0.36 -15.20 16 16 S 2.53 77.52 4.29 -56.49 -0.24 77.28 16 17 O -0.96 -35.21 17.13 -127.64 -2.19 -37.39 16 18 O -0.97 -38.39 17.12 -127.64 -2.19 -40.58 16 19 C -0.70 -15.08 5.66 22.28 0.13 -14.96 16 20 C 0.01 0.18 9.46 22.25 0.21 0.39 16 21 C -0.18 -2.69 9.99 22.37 0.22 -2.47 16 22 C 0.18 2.71 6.69 22.51 0.15 2.86 16 23 O -0.32 -4.17 10.50 -92.34 -0.97 -5.14 16 24 C 0.01 0.06 9.81 113.37 1.11 1.17 16 25 C -0.23 -3.34 9.04 22.37 0.20 -3.14 16 26 C 0.01 0.13 9.46 22.25 0.21 0.34 16 27 H 0.07 1.08 7.22 -2.39 -0.02 1.07 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 31 H 0.11 1.98 6.44 -2.39 -0.02 1.96 16 32 H 0.06 2.55 7.13 -2.38 -0.02 2.53 16 33 H 0.02 1.12 6.85 -2.39 -0.02 1.10 16 34 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 35 H 0.20 3.27 7.40 -2.39 -0.02 3.25 16 36 H 0.21 2.85 7.19 -2.39 -0.02 2.84 16 37 H 0.16 2.42 7.57 -2.91 -0.02 2.39 16 38 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 41 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 42 H 0.17 1.43 6.30 -2.91 -0.02 1.41 16 43 H 0.15 2.68 7.57 -2.91 -0.02 2.66 16 Total: -1.00 -94.77 373.66 1.09 -93.68 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.97 Total: 9.85 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 5.60 Total: -28.63 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.73 Total: -84.53 kcal Atomic # 8 Polarization: -108.77 SS G_CDS: -5.39 Total: -114.16 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: 77.52 SS G_CDS: -0.24 Total: 77.28 kcal Total: -94.77 1.09 -93.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289586813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.774 kcal (2) G-P(sol) polarization free energy of solvation -94.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds