Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47624 * 2 1 4 4 S 1.81401 * 109.47051 * 120.00169 * 2 1 3 5 5 O 1.42101 * 108.57779 * 70.51256 * 4 2 1 6 6 O 1.42098 * 108.57933 * 299.48328 * 4 2 1 7 7 C 1.81403 * 101.92338 * 184.99552 * 4 2 1 8 8 C 1.52997 * 109.47125 * 179.97438 * 7 4 2 9 9 N 1.46499 * 109.47058 * 180.02562 * 8 7 4 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47413 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47271 * 120.00166 * 23 21 19 26 26 H 1.48507 * 109.46838 * 239.99679 * 23 21 19 27 27 H 1.09003 * 109.46611 * 300.00384 * 1 2 3 28 28 H 1.09005 * 109.46828 * 59.99537 * 1 2 3 29 29 H 1.08994 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47099 * 239.99704 * 2 1 3 31 31 H 1.08998 * 109.46853 * 59.99736 * 3 2 1 32 32 H 1.08997 * 109.47242 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46606 * 300.00337 * 3 2 1 34 34 H 1.09004 * 109.46872 * 59.99835 * 7 4 2 35 35 H 1.09000 * 109.46934 * 300.00318 * 7 4 2 36 36 H 1.08999 * 109.46796 * 60.00389 * 8 7 4 37 37 H 1.08995 * 109.47178 * 299.99916 * 8 7 4 38 38 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 39 39 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 40 40 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 42 42 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8552 1.4811 5 8 1.8619 -2.2432 1.3455 6 8 1.6605 -0.1637 2.6284 7 6 3.9266 -0.6033 1.3540 8 6 4.6209 -1.2693 2.5437 9 7 6.0680 -1.0653 2.4413 10 6 6.8879 -1.5682 3.3854 11 8 6.4265 -2.1917 4.3219 12 6 8.3452 -1.3634 3.2820 13 6 8.8796 -0.6484 2.2078 14 6 10.2420 -0.4599 2.1172 15 6 11.0858 -0.9771 3.0871 16 6 10.5722 -1.6866 4.1537 17 6 9.2025 -1.8860 4.2616 18 8 8.6960 -2.5820 5.3084 19 6 9.5815 -3.1539 6.1488 20 1 10.6394 -2.9788 6.0198 21 6 9.1339 -3.9673 7.1794 22 7 7.8457 -4.1801 7.3369 23 14 10.3608 -4.7591 8.3443 24 1 11.7385 -4.3642 7.9556 25 1 10.0886 -4.3068 9.7322 26 1 10.2305 -6.2367 8.2707 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.1445 0.4647 1.3578 35 1 4.2907 -1.0451 0.4264 36 1 4.4029 -2.3373 2.5402 37 1 4.2567 -0.8271 3.4710 38 1 6.4361 -0.5683 1.6941 39 1 8.2258 -0.2396 1.4517 40 1 10.6539 0.0927 1.2858 41 1 12.1521 -0.8247 3.0074 42 1 11.2364 -2.0869 4.9053 43 1 7.5326 -4.7492 8.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290369403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -104.444665 kcal Electronic energy + Delta-G solvation = -27077.687481 eV Core-core repulsion = 23023.564182 eV Total energy + Delta-G solvation = -4054.123299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.63786 -38.17786 -37.25540 -36.37114 -36.28093 -35.52855 -34.97634 -32.35625 -31.54435 -29.88897 -28.94593 -27.84152 -25.43450 -24.31349 -23.04166 -22.35133 -21.31153 -20.11362 -18.95439 -18.08441 -17.68728 -17.45840 -16.51939 -16.30248 -15.90376 -15.54182 -15.35632 -14.81534 -14.65526 -14.25630 -14.19554 -13.97817 -13.81895 -13.74957 -13.60830 -13.19633 -12.85912 -12.77579 -12.56246 -12.34820 -12.30231 -12.20491 -12.03557 -11.90334 -11.74223 -11.72147 -11.32192 -11.22109 -11.14799 -10.92520 -10.80545 -10.56815 -10.44505 -9.59304 -8.91123 -8.88887 -8.69450 -8.30781 -7.33539 -6.45049 -4.05150 -0.37874 1.67989 2.29005 2.41458 3.11912 3.12933 3.18795 3.22141 3.63988 3.69670 3.70945 3.93054 4.05382 4.10557 4.25492 4.53121 4.58324 4.62505 4.94753 4.97257 5.04800 5.11184 5.12684 5.15343 5.25742 5.39325 5.48690 5.51526 5.53556 5.60676 5.65553 5.79121 6.04413 6.08984 6.53092 6.65144 6.77740 6.88384 7.03232 7.21191 7.27632 7.66619 7.89946 8.03154 8.93966 9.02317 9.65858 10.68652 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002620 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.149408 B =10685.283356 C =12289.585615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.575 4.575 3 C -0.148 4.148 4 S 2.424 3.576 5 O -0.931 6.931 6 O -0.927 6.927 7 C -0.632 4.632 8 C 0.138 3.862 9 N -0.739 5.739 10 C 0.553 3.447 11 O -0.496 6.496 12 C -0.228 4.228 13 C -0.038 4.038 14 C -0.232 4.232 15 C -0.050 4.050 16 C -0.237 4.237 17 C 0.189 3.811 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.095 0.905 21 C 0.044 3.956 22 N -0.830 5.830 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 11.140 -17.686 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.685 4.685 3 C -0.206 4.206 4 S 2.603 3.397 5 O -0.928 6.928 6 O -0.924 6.924 7 C -0.760 4.760 8 C 0.012 3.988 9 N -0.397 5.397 10 C 0.342 3.658 11 O -0.369 6.369 12 C -0.233 4.233 13 C -0.057 4.057 14 C -0.251 4.251 15 C -0.069 4.069 16 C -0.256 4.256 17 C 0.129 3.871 18 O -0.020 6.020 19 C -0.480 4.480 20 H 0.112 0.888 21 C -0.164 4.164 22 N -0.461 5.461 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.101 10.000 -16.033 20.973 hybrid contribution 1.406 0.353 -0.706 1.613 sum -7.694 10.353 -16.739 21.133 Atomic orbital electron populations 1.21637 0.89760 1.03973 1.04752 1.30073 1.07254 1.09802 1.21348 1.21780 1.01669 0.92103 1.05081 1.08193 0.77815 0.76116 0.77531 1.93613 1.82949 1.29705 1.86487 1.93601 1.78072 1.75513 1.45196 1.30691 1.25676 1.11301 1.08361 1.20752 0.82277 1.00839 0.94905 1.45801 1.05123 1.60119 1.28671 1.18298 0.86398 0.79193 0.81884 1.90973 1.76650 1.38171 1.31148 1.18772 0.91478 1.13355 0.99653 1.20737 0.95148 0.95013 0.94827 1.20448 0.93256 1.09336 1.02043 1.20898 0.98622 0.94304 0.93062 1.21160 0.94967 1.07462 1.01993 1.19267 0.90905 0.90067 0.86895 1.84174 1.34578 1.54138 1.29154 1.21557 0.89388 1.28281 1.08770 0.88755 1.25411 0.97023 0.96367 0.97592 1.70133 1.12986 1.33310 1.29674 0.85646 0.79380 0.78945 0.79405 1.18973 1.19984 1.19983 0.90539 0.90046 0.90876 0.84481 0.90274 0.90952 0.90216 0.84161 0.84284 0.90107 0.90068 0.77067 0.87134 0.87289 0.87165 0.85020 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.58 -3.17 3.35 -26.73 -0.09 -3.26 16 3 C -0.15 -0.63 8.90 37.16 0.33 -0.30 16 4 S 2.42 23.36 4.26 -107.50 -0.46 22.90 16 5 O -0.93 -12.57 18.10 -57.83 -1.05 -13.61 16 6 O -0.93 -12.18 18.06 -57.83 -1.04 -13.22 16 7 C -0.63 -5.17 5.31 37.16 0.20 -4.98 16 8 C 0.14 1.97 5.68 -4.04 -0.02 1.95 16 9 N -0.74 -11.59 5.51 -61.35 -0.34 -11.93 16 10 C 0.55 12.16 7.76 -12.47 -0.10 12.06 16 11 O -0.50 -13.74 15.17 -16.57 -0.25 -13.99 16 12 C -0.23 -4.89 5.89 -104.81 -0.62 -5.51 16 13 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 14 C -0.23 -3.69 10.03 -39.61 -0.40 -4.09 16 15 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 16 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 17 C 0.19 4.67 6.66 -38.60 -0.26 4.41 16 18 O -0.12 -3.63 7.84 -21.08 -0.17 -3.79 16 19 C -0.40 -11.45 9.49 30.90 0.29 -11.16 16 20 H 0.10 2.42 5.21 -52.49 -0.27 2.15 16 21 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 22 N -0.83 -25.22 13.67 55.48 0.76 -24.46 16 23 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.18 6.39 -51.93 -0.33 -0.15 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.14 0.74 6.77 -51.92 -0.35 0.38 16 35 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.39 4.55 6.50 -40.82 -0.27 4.29 16 39 H 0.11 1.35 6.40 -52.49 -0.34 1.01 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -40.57 374.56 -9.11 -49.68 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.64 Total: 5.10 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.55 Total: -17.89 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.42 Total: -36.39 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.51 Total: -44.62 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 23.36 SS G_CDS: -0.46 Total: 22.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.57 -9.11 -49.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290369403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.768 kcal (2) G-P(sol) polarization free energy of solvation -40.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds