Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47624 * 2 1 4 4 S 1.81401 * 109.47051 * 120.00169 * 2 1 3 5 5 O 1.42101 * 108.57779 * 70.51256 * 4 2 1 6 6 O 1.42098 * 108.57933 * 299.48328 * 4 2 1 7 7 C 1.81403 * 101.92338 * 184.99552 * 4 2 1 8 8 C 1.52997 * 109.47125 * 179.97438 * 7 4 2 9 9 N 1.46499 * 109.47058 * 180.02562 * 8 7 4 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47413 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47271 * 120.00166 * 23 21 19 26 26 H 1.48507 * 109.46838 * 239.99679 * 23 21 19 27 27 H 1.09003 * 109.46611 * 300.00384 * 1 2 3 28 28 H 1.09005 * 109.46828 * 59.99537 * 1 2 3 29 29 H 1.08994 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47099 * 239.99704 * 2 1 3 31 31 H 1.08998 * 109.46853 * 59.99736 * 3 2 1 32 32 H 1.08997 * 109.47242 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46606 * 300.00337 * 3 2 1 34 34 H 1.09004 * 109.46872 * 59.99835 * 7 4 2 35 35 H 1.09000 * 109.46934 * 300.00318 * 7 4 2 36 36 H 1.08999 * 109.46796 * 60.00389 * 8 7 4 37 37 H 1.08995 * 109.47178 * 299.99916 * 8 7 4 38 38 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 39 39 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 40 40 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 42 42 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8552 1.4811 5 8 1.8619 -2.2432 1.3455 6 8 1.6605 -0.1637 2.6284 7 6 3.9266 -0.6033 1.3540 8 6 4.6209 -1.2693 2.5437 9 7 6.0680 -1.0653 2.4413 10 6 6.8879 -1.5682 3.3854 11 8 6.4265 -2.1917 4.3219 12 6 8.3452 -1.3634 3.2820 13 6 8.8796 -0.6484 2.2078 14 6 10.2420 -0.4599 2.1172 15 6 11.0858 -0.9771 3.0871 16 6 10.5722 -1.6866 4.1537 17 6 9.2025 -1.8860 4.2616 18 8 8.6960 -2.5820 5.3084 19 6 9.5815 -3.1539 6.1488 20 1 10.6394 -2.9788 6.0198 21 6 9.1339 -3.9673 7.1794 22 7 7.8457 -4.1801 7.3369 23 14 10.3608 -4.7591 8.3443 24 1 11.7385 -4.3642 7.9556 25 1 10.0886 -4.3068 9.7322 26 1 10.2305 -6.2367 8.2707 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.1445 0.4647 1.3578 35 1 4.2907 -1.0451 0.4264 36 1 4.4029 -2.3373 2.5402 37 1 4.2567 -0.8271 3.4710 38 1 6.4361 -0.5683 1.6941 39 1 8.2258 -0.2396 1.4517 40 1 10.6539 0.0927 1.2858 41 1 12.1521 -0.8247 3.0074 42 1 11.2364 -2.0869 4.9053 43 1 7.5326 -4.7492 8.0573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290369403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -138.012343 kcal Electronic energy + Delta-G solvation = -27079.143085 eV Core-core repulsion = 23023.564182 eV Total energy + Delta-G solvation = -4055.578903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31447 -39.88536 -38.12590 -38.03756 -37.15372 -36.44510 -35.95445 -34.33894 -32.94165 -31.17922 -30.56656 -28.27866 -27.39544 -25.51387 -24.17741 -23.31102 -22.81974 -21.67684 -19.86586 -19.76440 -19.30198 -18.23191 -17.92733 -17.34991 -16.96257 -16.77077 -16.47026 -16.33486 -15.88897 -15.79109 -15.69382 -15.37127 -15.28044 -14.76267 -14.39599 -14.28089 -14.20396 -14.11208 -13.55590 -13.42224 -13.24218 -13.19999 -13.06923 -13.06502 -12.88326 -12.69467 -12.54516 -12.34426 -12.31298 -12.28374 -12.09905 -11.98980 -11.44408 -11.15208 -10.85542 -10.64622 -10.23969 -9.80479 -9.04098 -8.45538 -6.16819 -1.10829 0.11089 0.73126 1.31490 1.42549 1.51805 1.73344 2.04914 2.12668 2.15483 2.67879 2.86900 2.98887 3.21719 3.36382 3.46753 3.60421 3.62997 3.83558 3.96639 4.08754 4.22584 4.23701 4.29673 4.46101 4.52223 4.60574 4.64595 4.66502 4.70768 4.82186 4.90845 4.97567 5.07325 5.13418 5.13810 5.29323 5.36005 5.47948 5.61299 5.70337 5.95258 6.17770 6.64521 6.93777 7.42172 7.79836 8.75342 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002620 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.149408 B =10685.283356 C =12289.585615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.535 4.535 3 C -0.160 4.160 4 S 2.400 3.600 5 O -0.985 6.985 6 O -0.979 6.979 7 C -0.614 4.614 8 C 0.124 3.876 9 N -0.708 5.708 10 C 0.543 3.457 11 O -0.570 6.570 12 C -0.245 4.245 13 C -0.027 4.027 14 C -0.199 4.199 15 C -0.039 4.039 16 C -0.258 4.258 17 C 0.147 3.853 18 O -0.191 6.191 19 C -0.426 4.426 20 H 0.108 0.892 21 C -0.025 4.025 22 N -0.907 5.907 23 Si 1.024 2.976 24 H -0.244 1.244 25 H -0.269 1.269 26 H -0.270 1.270 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.175 0.825 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.420 0.580 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.122 0.878 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 14.680 -23.241 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.649 4.649 3 C -0.217 4.217 4 S 2.587 3.413 5 O -0.982 6.982 6 O -0.976 6.976 7 C -0.743 4.743 8 C -0.001 4.001 9 N -0.365 5.365 10 C 0.334 3.666 11 O -0.449 6.449 12 C -0.250 4.250 13 C -0.046 4.046 14 C -0.217 4.217 15 C -0.057 4.057 16 C -0.277 4.277 17 C 0.092 3.908 18 O -0.093 6.093 19 C -0.502 4.502 20 H 0.126 0.874 21 C -0.224 4.224 22 N -0.543 5.543 23 Si 0.842 3.158 24 H -0.166 1.166 25 H -0.194 1.194 26 H -0.195 1.195 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.192 0.808 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.199 0.801 35 H 0.200 0.800 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.260 0.740 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.481 13.597 -21.664 26.385 hybrid contribution 0.639 -0.384 0.494 0.894 sum -5.842 13.212 -21.170 25.629 Atomic orbital electron populations 1.21835 0.90086 1.04005 1.05735 1.29776 1.06779 1.10361 1.18002 1.21997 1.03513 0.90495 1.05732 1.08546 0.78519 0.75330 0.78899 1.93546 1.83909 1.33151 1.87608 1.93537 1.79158 1.75772 1.49106 1.30557 1.23188 1.13521 1.07011 1.20810 0.81802 1.00201 0.97300 1.45444 1.05196 1.58309 1.27597 1.18700 0.87507 0.78548 0.81893 1.90956 1.77889 1.41601 1.34429 1.19241 0.91092 1.13984 1.00688 1.21355 0.96789 0.92766 0.93653 1.21205 0.92481 1.06123 1.01914 1.21457 1.01289 0.91771 0.91229 1.21294 0.93461 1.09152 1.03830 1.20140 0.93292 0.90231 0.87183 1.84185 1.35790 1.57640 1.31726 1.22089 0.90131 1.28722 1.09279 0.87431 1.26805 0.99165 0.96890 0.99525 1.70334 1.15911 1.36349 1.31677 0.84481 0.77218 0.77620 0.76459 1.16646 1.19415 1.19461 0.91454 0.87128 0.91523 0.80780 0.91296 0.88329 0.87916 0.80111 0.79961 0.92613 0.92454 0.74041 0.81522 0.81508 0.82851 0.86036 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.54 -4.02 3.35 30.59 0.10 -3.92 16 3 C -0.16 -0.58 8.90 71.98 0.64 0.06 16 4 S 2.40 45.78 4.26 -56.49 -0.24 45.54 16 5 O -0.99 -28.11 18.10 -127.37 -2.30 -30.42 16 6 O -0.98 -27.41 18.06 -127.37 -2.30 -29.71 16 7 C -0.61 -8.34 5.31 71.98 0.38 -7.96 16 8 C 0.12 3.64 5.68 86.38 0.49 4.13 16 9 N -0.71 -21.36 5.51 -466.29 -2.57 -23.92 16 10 C 0.54 24.79 7.76 86.69 0.67 25.47 16 11 O -0.57 -34.63 15.17 16.88 0.26 -34.37 16 12 C -0.25 -10.47 5.89 -19.99 -0.12 -10.59 16 13 C -0.03 -0.76 9.54 22.52 0.21 -0.55 16 14 C -0.20 -4.91 10.03 22.25 0.22 -4.68 16 15 C -0.04 -1.18 10.03 22.30 0.22 -0.95 16 16 C -0.26 -10.93 9.16 22.36 0.20 -10.72 16 17 C 0.15 7.57 6.66 22.91 0.15 7.72 16 18 O -0.19 -12.31 7.84 0.74 0.01 -12.31 16 19 C -0.43 -26.12 9.49 67.93 0.64 -25.48 16 20 H 0.11 5.89 5.21 -2.91 -0.02 5.87 16 21 C -0.02 -1.50 5.49 84.85 0.47 -1.04 16 22 N -0.91 -60.70 13.67 21.62 0.30 -60.40 16 23 Si 1.02 45.05 29.55 68.60 2.03 47.08 16 24 H -0.24 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 -0.14 6.39 -2.39 -0.02 -0.16 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.18 0.98 6.77 -2.39 -0.02 0.96 16 35 H 0.18 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.42 7.74 6.50 -92.71 -0.60 7.14 16 39 H 0.17 2.72 6.40 -2.91 -0.02 2.70 16 40 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 43 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -108.24 374.56 0.58 -107.66 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.44 Total: 20.21 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.96 Total: -29.35 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.27 Total: -84.33 kcal Atomic # 8 Polarization: -102.46 SS G_CDS: -4.34 Total: -106.81 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.24 Total: 45.54 kcal Total: -108.24 0.58 -107.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290369403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.355 kcal (2) G-P(sol) polarization free energy of solvation -108.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds