Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21294 * 119.99949 * 2 1 4 4 N 1.34774 * 120.00475 * 180.02562 * 2 1 3 5 5 C 1.40119 * 120.00197 * 185.53676 * 4 2 1 6 6 C 1.38714 * 120.09362 * 24.79679 * 5 4 2 7 7 C 1.38200 * 119.98807 * 180.02562 * 6 5 4 8 8 C 1.38274 * 120.16286 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.17774 * 0.02562 * 8 7 6 10 10 C 1.38544 * 120.01765 * 0.02562 * 9 8 7 11 11 O 1.35976 * 120.08436 * 180.02562 * 10 9 8 12 12 S 1.52194 * 114.00422 * 269.95481 * 11 10 9 13 13 O 1.42101 * 104.27987 * 191.07192 * 12 11 10 14 14 O 1.42099 * 104.27645 * 318.93111 * 12 11 10 15 15 C 1.81395 * 104.44828 * 75.00003 * 12 11 10 16 16 C 1.52997 * 109.47284 * 180.02562 * 15 12 11 17 17 C 1.53006 * 109.47171 * 299.99715 * 16 15 12 18 18 C 1.52998 * 109.47472 * 59.99591 * 16 15 12 19 19 C 1.50699 * 109.47552 * 180.02562 * 16 15 12 20 20 H 1.08003 * 119.99587 * 359.97438 * 19 16 15 21 21 C 1.37879 * 120.00145 * 179.97438 * 19 16 15 22 22 N 1.31509 * 120.00098 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99807 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47167 * 59.99717 * 23 21 19 25 25 H 1.48497 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47165 * 299.99747 * 23 21 19 27 27 H 1.09002 * 109.46867 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46930 * 299.99931 * 1 2 3 29 29 H 1.08994 * 109.47107 * 60.00104 * 1 2 3 30 30 H 0.97003 * 119.99771 * 5.53044 * 4 2 1 31 31 H 1.08004 * 120.00712 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.92053 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.91157 * 179.74388 * 8 7 6 34 34 H 1.08006 * 119.99082 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47348 * 300.00088 * 15 12 11 36 36 H 1.08998 * 109.47204 * 59.99837 * 15 12 11 37 37 H 1.09003 * 109.46596 * 59.99893 * 17 16 15 38 38 H 1.08991 * 109.47606 * 179.97438 * 17 16 15 39 39 H 1.08998 * 109.46894 * 300.00224 * 17 16 15 40 40 H 1.09005 * 109.46690 * 60.00520 * 18 16 15 41 41 H 1.09001 * 109.47282 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.47224 * 300.00676 * 18 16 15 43 43 H 0.97000 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5773 -1.1699 0.1166 6 6 4.2261 -0.1076 0.7287 7 6 5.6034 -0.1124 0.8425 8 6 6.3377 -1.1745 0.3479 9 6 5.6981 -2.2368 -0.2634 10 6 4.3178 -2.2392 -0.3825 11 8 3.6872 -3.2835 -0.9831 12 16 3.5040 -3.1155 -2.4846 13 8 2.6148 -4.1624 -2.8485 14 8 3.1345 -1.7525 -2.6421 15 6 5.1538 -3.4119 -3.1778 16 6 5.1005 -3.2694 -4.7002 17 6 4.1154 -4.2901 -5.2738 18 6 4.6405 -1.8564 -5.0645 19 6 6.4710 -3.5163 -5.2763 20 1 7.2975 -3.7509 -4.6219 21 6 6.6697 -3.4426 -6.6387 22 7 5.6631 -3.1575 -7.4356 23 14 8.3687 -3.7479 -7.3526 24 1 8.8153 -5.1192 -6.9985 25 1 8.3165 -3.6110 -8.8304 26 1 9.3247 -2.7568 -6.7966 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6994 -2.0052 -0.0819 31 1 3.6550 0.7231 1.1163 32 1 6.1073 0.7150 1.3197 33 1 7.4141 -1.1721 0.4353 34 1 6.2746 -3.0650 -0.6483 35 1 5.8556 -2.6845 -2.7696 36 1 5.4817 -4.4184 -2.9180 37 1 3.1240 -4.1120 -4.8572 38 1 4.0770 -4.1884 -6.3583 39 1 4.4431 -5.2968 -5.0143 40 1 5.3423 -1.1293 -4.6560 41 1 4.6029 -1.7548 -6.1491 42 1 3.6491 -1.6783 -4.6479 43 1 5.8030 -3.1053 -8.3940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295260281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -107.176262 kcal Electronic energy + Delta-G solvation = -29331.831039 eV Core-core repulsion = 25277.589288 eV Total energy + Delta-G solvation = -4054.241750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43119 -39.77723 -37.84265 -36.73114 -36.34564 -35.55588 -34.95232 -31.74206 -31.17820 -30.43418 -28.63551 -26.87493 -25.75708 -25.26727 -23.61790 -23.27474 -20.70816 -20.58522 -19.53076 -18.25230 -17.84014 -17.30161 -17.21524 -16.34874 -16.03535 -15.64192 -15.34820 -14.94610 -14.82036 -14.73993 -14.22757 -13.74071 -13.43742 -13.22423 -13.06186 -12.91540 -12.85475 -12.56697 -12.45477 -12.22091 -12.17142 -12.01183 -11.65679 -11.58402 -11.18122 -11.09347 -11.01069 -10.76647 -10.72232 -10.44598 -10.32419 -10.13370 -9.94847 -9.69428 -9.57429 -9.05782 -8.73766 -8.42585 -8.26474 -6.06027 -4.18222 0.38561 1.08239 1.20289 2.39652 2.49706 2.83893 3.25622 3.31244 3.32574 3.54539 4.05966 4.34114 4.36137 4.43212 4.61736 4.80897 4.87426 4.96285 5.13320 5.16155 5.19311 5.24044 5.35394 5.57424 5.59156 5.63457 5.86923 5.99761 6.10532 6.21658 6.29360 6.31682 6.65232 6.74888 6.78264 6.85395 6.99480 7.11585 7.27733 7.46354 7.64777 7.86602 7.94363 8.05273 8.29146 8.79615 9.47244 10.95467 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.003990 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.902220 B = 7015.467355 C = 7682.144740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.519 3.481 3 O -0.521 6.521 4 N -0.664 5.664 5 C 0.180 3.820 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.122 4.122 9 C -0.106 4.106 10 C 0.041 3.959 11 O -0.678 6.678 12 S 2.567 3.433 13 O -0.937 6.937 14 O -0.951 6.951 15 C -0.602 4.602 16 C 0.086 3.914 17 C -0.165 4.165 18 C -0.163 4.163 19 C -0.503 4.503 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.413 0.587 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.025 0.975 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 3.714 17.625 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.309 3.691 3 O -0.396 6.396 4 N -0.308 5.308 5 C 0.082 3.918 6 C -0.143 4.143 7 C -0.104 4.104 8 C -0.141 4.141 9 C -0.127 4.127 10 C -0.003 4.003 11 O -0.637 6.637 12 S 2.668 3.332 13 O -0.935 6.935 14 O -0.949 6.949 15 C -0.734 4.734 16 C 0.084 3.916 17 C -0.222 4.222 18 C -0.220 4.220 19 C -0.543 4.543 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.249 0.751 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.044 0.956 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.360 4.466 17.597 18.929 hybrid contribution 1.301 -1.061 -0.879 1.895 sum -4.059 3.404 16.717 17.536 Atomic orbital electron populations 1.21881 0.90354 1.04882 1.05904 1.20981 0.90992 0.82724 0.74447 1.90684 1.70233 1.31145 1.47529 1.43652 1.04930 1.10616 1.71607 1.17815 0.83322 0.94513 0.96156 1.21354 0.95027 0.98412 0.99495 1.21255 0.93317 0.98104 0.97760 1.21032 1.00636 0.93201 0.99225 1.21276 0.91369 1.00301 0.99729 1.17733 0.90744 0.86824 1.05048 1.85747 1.78655 1.51499 1.47753 1.06391 0.79366 0.74830 0.72587 1.93587 1.62387 1.58122 1.79428 1.93620 1.82650 1.35724 1.82950 1.30763 1.19815 1.10460 1.12349 1.17906 0.97633 0.93611 0.82485 1.22293 0.95639 0.98303 1.05991 1.22268 0.97436 0.96554 1.05788 1.20885 0.92943 1.48589 0.91851 0.92291 1.24931 0.96992 0.94750 0.96984 1.69784 1.30229 1.48069 1.04047 0.86583 0.84219 0.78765 0.77982 1.20248 1.21154 1.20225 0.90176 0.88120 0.87835 0.75141 0.82594 0.84626 0.84344 0.83633 0.85967 0.85881 0.95587 0.88441 0.94342 0.94397 0.88584 0.95374 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.39 36.01 0.37 -0.99 16 2 C 0.52 6.71 7.75 -10.98 -0.09 6.62 16 3 O -0.52 -8.33 14.27 5.55 0.08 -8.25 16 4 N -0.66 -8.91 4.64 -9.75 -0.05 -8.96 16 5 C 0.18 2.67 5.70 -83.50 -0.48 2.19 16 6 C -0.12 -1.63 8.72 -39.42 -0.34 -1.97 16 7 C -0.09 -0.93 10.04 -39.58 -0.40 -1.32 16 8 C -0.12 -1.32 10.04 -39.57 -0.40 -1.72 16 9 C -0.11 -1.38 8.46 -39.47 -0.33 -1.71 16 10 C 0.04 0.62 4.81 -39.07 -0.19 0.43 16 11 O -0.68 -11.10 9.47 -51.99 -0.49 -11.59 16 12 S 2.57 49.71 4.20 -107.50 -0.45 49.26 16 13 O -0.94 -20.25 15.72 -67.04 -1.05 -21.30 16 14 O -0.95 -19.72 13.36 -67.04 -0.90 -20.61 16 15 C -0.60 -12.00 4.40 37.16 0.16 -11.84 16 16 C 0.09 2.08 0.52 -155.66 -0.08 2.00 16 17 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 18 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 19 C -0.50 -13.14 8.01 -34.44 -0.28 -13.42 16 20 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 23 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.41 4.74 8.19 -40.82 -0.33 4.41 16 31 H 0.16 2.04 5.79 -52.48 -0.30 1.74 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.15 1.62 7.50 -52.48 -0.39 1.22 16 35 H 0.12 2.20 6.61 -51.92 -0.34 1.86 16 36 H 0.12 2.21 8.14 -51.92 -0.42 1.78 16 37 H 0.03 0.61 5.46 -51.93 -0.28 0.32 16 38 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -33.85 353.35 -9.07 -42.92 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.48 Total: 8.80 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -1.55 Total: -27.59 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.47 Total: -32.45 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -2.36 Total: -61.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 49.71 SS G_CDS: -0.45 Total: 49.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.85 -9.07 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295260281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.256 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds