Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21294 * 119.99949 * 2 1 4 4 N 1.34774 * 120.00475 * 180.02562 * 2 1 3 5 5 C 1.40119 * 120.00197 * 185.53676 * 4 2 1 6 6 C 1.38714 * 120.09362 * 24.79679 * 5 4 2 7 7 C 1.38200 * 119.98807 * 180.02562 * 6 5 4 8 8 C 1.38274 * 120.16286 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.17774 * 0.02562 * 8 7 6 10 10 C 1.38544 * 120.01765 * 0.02562 * 9 8 7 11 11 O 1.35976 * 120.08436 * 180.02562 * 10 9 8 12 12 S 1.52194 * 114.00422 * 269.95481 * 11 10 9 13 13 O 1.42101 * 104.27987 * 191.07192 * 12 11 10 14 14 O 1.42099 * 104.27645 * 318.93111 * 12 11 10 15 15 C 1.81395 * 104.44828 * 75.00003 * 12 11 10 16 16 C 1.52997 * 109.47284 * 180.02562 * 15 12 11 17 17 C 1.53006 * 109.47171 * 299.99715 * 16 15 12 18 18 C 1.52998 * 109.47472 * 59.99591 * 16 15 12 19 19 C 1.50699 * 109.47552 * 180.02562 * 16 15 12 20 20 H 1.08003 * 119.99587 * 359.97438 * 19 16 15 21 21 C 1.37879 * 120.00145 * 179.97438 * 19 16 15 22 22 N 1.31509 * 120.00098 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99807 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47167 * 59.99717 * 23 21 19 25 25 H 1.48497 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47165 * 299.99747 * 23 21 19 27 27 H 1.09002 * 109.46867 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46930 * 299.99931 * 1 2 3 29 29 H 1.08994 * 109.47107 * 60.00104 * 1 2 3 30 30 H 0.97003 * 119.99771 * 5.53044 * 4 2 1 31 31 H 1.08004 * 120.00712 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.92053 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.91157 * 179.74388 * 8 7 6 34 34 H 1.08006 * 119.99082 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47348 * 300.00088 * 15 12 11 36 36 H 1.08998 * 109.47204 * 59.99837 * 15 12 11 37 37 H 1.09003 * 109.46596 * 59.99893 * 17 16 15 38 38 H 1.08991 * 109.47606 * 179.97438 * 17 16 15 39 39 H 1.08998 * 109.46894 * 300.00224 * 17 16 15 40 40 H 1.09005 * 109.46690 * 60.00520 * 18 16 15 41 41 H 1.09001 * 109.47282 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.47224 * 300.00676 * 18 16 15 43 43 H 0.97000 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5773 -1.1699 0.1166 6 6 4.2261 -0.1076 0.7287 7 6 5.6034 -0.1124 0.8425 8 6 6.3377 -1.1745 0.3479 9 6 5.6981 -2.2368 -0.2634 10 6 4.3178 -2.2392 -0.3825 11 8 3.6872 -3.2835 -0.9831 12 16 3.5040 -3.1155 -2.4846 13 8 2.6148 -4.1624 -2.8485 14 8 3.1345 -1.7525 -2.6421 15 6 5.1538 -3.4119 -3.1778 16 6 5.1005 -3.2694 -4.7002 17 6 4.1154 -4.2901 -5.2738 18 6 4.6405 -1.8564 -5.0645 19 6 6.4710 -3.5163 -5.2763 20 1 7.2975 -3.7509 -4.6219 21 6 6.6697 -3.4426 -6.6387 22 7 5.6631 -3.1575 -7.4356 23 14 8.3687 -3.7479 -7.3526 24 1 8.8153 -5.1192 -6.9985 25 1 8.3165 -3.6110 -8.8304 26 1 9.3247 -2.7568 -6.7966 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6994 -2.0052 -0.0819 31 1 3.6550 0.7231 1.1163 32 1 6.1073 0.7150 1.3197 33 1 7.4141 -1.1721 0.4353 34 1 6.2746 -3.0650 -0.6483 35 1 5.8556 -2.6845 -2.7696 36 1 5.4817 -4.4184 -2.9180 37 1 3.1240 -4.1120 -4.8572 38 1 4.0770 -4.1884 -6.3583 39 1 4.4431 -5.2968 -5.0143 40 1 5.3423 -1.1293 -4.6560 41 1 4.6029 -1.7548 -6.1491 42 1 3.6491 -1.6783 -4.6479 43 1 5.8030 -3.1053 -8.3940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295260281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -129.678031 kcal Electronic energy + Delta-G solvation = -29332.806788 eV Core-core repulsion = 25277.589288 eV Total energy + Delta-G solvation = -4055.217500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53883 -40.87385 -38.88864 -38.30878 -38.17764 -37.15458 -35.98799 -33.67802 -32.05535 -31.40511 -29.48914 -28.56028 -27.73413 -27.27113 -24.67444 -24.29670 -21.90502 -21.65638 -21.26846 -19.51424 -19.18490 -18.55743 -18.25072 -17.93191 -17.60107 -16.82015 -16.63559 -16.52707 -16.15974 -15.85365 -15.26783 -15.09102 -14.80548 -14.70515 -14.47178 -14.37257 -14.12014 -13.94846 -13.67450 -13.48176 -13.21914 -13.13931 -13.02499 -12.90900 -12.88724 -12.81767 -12.61538 -12.56222 -12.23672 -12.18755 -12.01330 -11.72133 -11.60542 -11.41193 -10.94489 -10.67570 -10.42059 -10.02181 -9.27246 -8.03845 -6.22587 -1.00237 0.05634 0.15468 1.12937 1.46441 1.46456 1.46658 1.53916 1.92201 2.43373 2.56448 2.58913 2.94934 3.19263 3.50541 3.61679 3.79044 3.93677 3.96872 4.09930 4.25130 4.27461 4.41469 4.44917 4.53629 4.59366 4.78047 4.81222 4.91179 4.92736 4.98877 5.00923 5.05496 5.18464 5.28469 5.33841 5.39692 5.47030 5.63215 5.83844 5.93544 6.07411 6.17508 6.31341 6.81313 6.90120 7.45802 8.96252 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.003990 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.902220 B = 7015.467355 C = 7682.144740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.558 6.558 4 N -0.668 5.668 5 C 0.160 3.840 6 C -0.140 4.140 7 C -0.072 4.072 8 C -0.117 4.117 9 C -0.113 4.113 10 C 0.002 3.998 11 O -0.664 6.664 12 S 2.586 3.414 13 O -0.966 6.966 14 O -0.970 6.970 15 C -0.607 4.607 16 C 0.074 3.926 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.518 4.518 20 H 0.066 0.934 21 C 0.019 3.981 22 N -0.908 5.908 23 Si 0.955 3.045 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.270 1.270 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.418 0.582 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 3.878 19.326 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.301 3.699 3 O -0.437 6.437 4 N -0.312 5.312 5 C 0.061 3.939 6 C -0.160 4.160 7 C -0.092 4.092 8 C -0.135 4.135 9 C -0.133 4.133 10 C -0.042 4.042 11 O -0.623 6.623 12 S 2.687 3.313 13 O -0.964 6.964 14 O -0.968 6.968 15 C -0.737 4.737 16 C 0.073 3.927 17 C -0.220 4.220 18 C -0.215 4.215 19 C -0.557 4.557 20 H 0.085 0.915 21 C -0.181 4.181 22 N -0.547 5.547 23 Si 0.781 3.219 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.195 1.195 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.255 0.745 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.836 4.600 19.290 20.198 hybrid contribution 0.850 -1.037 -1.278 1.853 sum -2.986 3.562 18.011 18.602 Atomic orbital electron populations 1.21983 0.86636 1.06784 1.07090 1.21905 0.92812 0.81976 0.73209 1.90651 1.71392 1.32259 1.49357 1.43829 1.04848 1.11184 1.71337 1.18178 0.84121 0.94942 0.96649 1.21533 0.96328 0.98034 1.00083 1.21736 0.92395 0.98914 0.96117 1.21508 1.02445 0.91972 0.97581 1.21678 0.90559 1.01513 0.99591 1.18152 0.91888 0.87205 1.06940 1.85714 1.78929 1.51884 1.45803 1.05756 0.78678 0.73836 0.73006 1.93540 1.63289 1.58906 1.80711 1.93583 1.82835 1.36681 1.83714 1.30695 1.21228 1.12424 1.09386 1.17882 0.96747 0.92727 0.85391 1.22238 0.96316 0.98855 1.04583 1.22185 0.97831 0.97339 1.04173 1.21249 0.93938 1.48289 0.92261 0.91539 1.25678 1.00147 0.94727 0.97534 1.69930 1.31885 1.48805 1.04038 0.85654 0.80399 0.78852 0.76979 1.19632 1.21435 1.19545 0.87992 0.85739 0.87599 0.74519 0.82992 0.81132 0.80610 0.81944 0.84010 0.83930 0.95168 0.90696 0.93970 0.94246 0.90946 0.94921 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.39 71.24 0.74 -1.70 16 2 C 0.51 13.07 7.75 87.66 0.68 13.75 16 3 O -0.56 -18.03 14.27 -3.07 -0.04 -18.08 16 4 N -0.67 -17.82 4.64 -303.14 -1.41 -19.23 16 5 C 0.16 4.64 5.70 38.19 0.22 4.86 16 6 C -0.14 -3.55 8.72 22.37 0.20 -3.35 16 7 C -0.07 -1.36 10.04 22.27 0.22 -1.14 16 8 C -0.12 -2.11 10.04 22.28 0.22 -1.88 16 9 C -0.11 -2.65 8.46 22.34 0.19 -2.46 16 10 C 0.00 0.07 4.81 22.60 0.11 0.18 16 11 O -0.66 -21.22 9.47 -62.37 -0.59 -21.81 16 12 S 2.59 98.84 4.20 -56.49 -0.24 98.60 16 13 O -0.97 -41.74 15.72 -118.57 -1.86 -43.60 16 14 O -0.97 -40.18 13.36 -118.57 -1.58 -41.76 16 15 C -0.61 -23.37 4.40 71.98 0.32 -23.05 16 16 C 0.07 3.58 0.52 -52.93 -0.03 3.56 16 17 C -0.16 -8.08 7.77 71.98 0.56 -7.52 16 18 C -0.16 -7.84 7.78 71.98 0.56 -7.28 16 19 C -0.52 -26.63 8.01 25.60 0.21 -26.43 16 20 H 0.07 3.23 7.74 -2.91 -0.02 3.21 16 21 C 0.02 0.98 5.15 84.66 0.44 1.41 16 22 N -0.91 -49.98 9.35 21.45 0.20 -49.78 16 23 Si 0.96 41.55 29.54 68.60 2.03 43.58 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H 0.10 1.03 7.92 -2.39 -0.02 1.01 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.42 9.60 8.19 -92.71 -0.76 8.84 16 31 H 0.15 3.95 5.79 -2.91 -0.02 3.93 16 32 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.16 3.11 7.50 -2.91 -0.02 3.09 16 35 H 0.14 4.82 6.61 -2.39 -0.02 4.80 16 36 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 37 H 0.03 1.43 5.46 -2.39 -0.01 1.42 16 38 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 42 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 43 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -73.86 353.35 1.42 -72.44 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.30 Total: 30.71 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 4.63 Total: -51.06 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.21 Total: -69.00 kcal Atomic # 8 Polarization: -121.17 SS G_CDS: -4.08 Total: -125.26 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 98.84 SS G_CDS: -0.24 Total: 98.60 kcal Total: -73.86 1.42 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295260281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.242 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds