Wall clock time and date at job start Sat Apr 11 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99787 * 2 1 4 4 N 1.34780 * 120.00383 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00205 * 184.31276 * 4 2 1 6 6 C 1.38927 * 120.04059 * 212.78382 * 5 4 2 7 7 C 1.38125 * 120.03710 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.12385 * 359.67318 * 7 6 5 9 9 C 1.38763 * 120.08435 * 0.60830 * 8 7 6 10 10 O 1.35896 * 120.02124 * 179.69469 * 9 8 7 11 11 S 1.52197 * 114.00035 * 269.72143 * 10 9 8 12 12 O 1.42100 * 104.27663 * 318.92928 * 11 10 9 13 13 O 1.42097 * 104.28317 * 191.07018 * 11 10 9 14 14 C 1.81400 * 104.44811 * 74.99917 * 11 10 9 15 15 C 1.53004 * 109.47347 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46961 * 300.00257 * 15 14 11 17 17 C 1.52997 * 109.46879 * 59.99789 * 15 14 11 18 18 C 1.50696 * 109.47527 * 179.97438 * 15 14 11 19 19 H 1.08007 * 120.00036 * 1.06280 * 18 15 14 20 20 C 1.37876 * 120.00328 * 181.05826 * 18 15 14 21 21 N 1.31516 * 120.00160 * 194.46855 * 20 18 15 22 22 Si 1.86796 * 119.99798 * 14.47395 * 20 18 15 23 23 H 1.48506 * 109.47195 * 84.31629 * 22 20 18 24 24 H 1.48498 * 109.47113 * 204.31655 * 22 20 18 25 25 H 1.48500 * 109.47216 * 324.31836 * 22 20 18 26 26 C 1.38624 * 119.96010 * 359.41585 * 9 8 7 27 27 H 1.08998 * 109.47555 * 269.99909 * 1 2 3 28 28 H 1.08998 * 109.47449 * 30.00206 * 1 2 3 29 29 H 1.09007 * 109.47218 * 150.00119 * 1 2 3 30 30 H 0.96998 * 119.99660 * 4.31899 * 4 2 1 31 31 H 1.07995 * 119.98224 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.93672 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.95887 * 180.29856 * 8 7 6 34 34 H 1.09004 * 109.47300 * 299.99841 * 14 11 10 35 35 H 1.08993 * 109.47162 * 60.00112 * 14 11 10 36 36 H 1.09002 * 109.47380 * 70.21627 * 16 15 14 37 37 H 1.08998 * 109.47517 * 190.21846 * 16 15 14 38 38 H 1.09007 * 109.46998 * 310.21741 * 16 15 14 39 39 H 1.09004 * 109.47247 * 60.00643 * 17 15 14 40 40 H 1.09001 * 109.47267 * 179.97438 * 17 15 14 41 41 H 1.08992 * 109.47771 * 300.00129 * 17 15 14 42 42 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.06744 * 180.25728 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5771 -1.1688 0.0916 6 6 4.3148 -2.1558 -0.5500 7 6 5.6931 -2.1577 -0.4596 8 6 6.3422 -1.1745 0.2633 9 6 5.6101 -0.1896 0.9111 10 8 6.2493 0.7728 1.6266 11 16 6.4652 0.4154 3.0902 12 8 5.2491 -0.2064 3.4822 13 8 6.8925 1.6313 3.6886 14 6 7.8186 -0.7922 3.0662 15 6 8.1328 -1.2347 4.4968 16 6 8.5489 -0.0187 5.3269 17 6 6.8893 -1.8745 5.1174 18 6 9.2567 -2.2383 4.4769 19 1 9.7140 -2.5186 3.5394 20 6 9.7014 -2.7989 5.6555 21 7 10.8468 -3.4446 5.6855 22 14 8.6771 -2.6412 7.2095 23 1 7.6499 -3.7134 7.2362 24 1 9.5579 -2.7699 8.3981 25 1 8.0090 -1.3152 7.2297 26 6 4.2267 -0.1847 0.8231 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6980 -2.0060 -0.0624 31 1 3.8104 -2.9221 -1.1198 32 1 6.2650 -2.9260 -0.9587 33 1 7.4202 -1.1758 0.3283 34 1 7.5220 -1.6588 2.4752 35 1 8.7043 -0.3366 2.6237 36 1 7.6823 0.6211 5.4939 37 1 8.9448 -0.3518 6.2863 38 1 9.3161 0.5412 4.7919 39 1 6.5929 -2.7408 4.5261 40 1 7.1132 -2.1901 6.1364 41 1 6.0761 -1.1489 5.1318 42 1 11.1594 -3.8393 6.5146 43 1 3.6554 0.5835 1.3231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295355131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:25 Heat of formation + Delta-G solvation = -90.291767 kcal Electronic energy + Delta-G solvation = -28754.483444 eV Core-core repulsion = 24700.973860 eV Total energy + Delta-G solvation = -4053.509584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27837 -40.21318 -38.00599 -36.85434 -36.73229 -35.65796 -34.94542 -31.98083 -31.32212 -30.53912 -28.93718 -27.55027 -26.39856 -25.04997 -23.82136 -23.29169 -20.98747 -20.69213 -19.64863 -18.41782 -17.65409 -17.46318 -16.71649 -16.53622 -16.44269 -16.16611 -15.72056 -15.49428 -14.96338 -14.73398 -14.29169 -13.82874 -13.52544 -13.47015 -13.24097 -13.14436 -12.94951 -12.85147 -12.68274 -12.52185 -12.38467 -12.15507 -11.93526 -11.70881 -11.67695 -11.59855 -11.14577 -11.04904 -10.78985 -10.74871 -10.21936 -10.18448 -10.07559 -9.96467 -9.15250 -9.00420 -8.77089 -8.50374 -8.48628 -6.21039 -4.18549 0.30175 0.93799 1.13891 2.20648 2.38359 2.68109 3.24029 3.33562 3.37820 3.40285 3.99041 4.23223 4.32695 4.37541 4.60614 4.68324 4.74922 4.82068 4.93932 4.95934 5.08090 5.10674 5.23253 5.31064 5.39286 5.49899 5.85504 5.86481 5.95215 6.01239 6.06170 6.12690 6.18408 6.29468 6.41367 6.47511 6.66027 6.70777 6.85188 6.95990 7.10385 7.29692 7.60179 7.70732 8.36775 8.81290 9.42836 10.91415 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.003497 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.629059 B = 8005.119962 C = 8237.871354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.521 6.521 4 N -0.672 5.672 5 C 0.157 3.843 6 C -0.134 4.134 7 C -0.079 4.079 8 C -0.143 4.143 9 C 0.096 3.904 10 O -0.672 6.672 11 S 2.572 3.428 12 O -0.958 6.958 13 O -0.932 6.932 14 C -0.597 4.597 15 C 0.058 3.942 16 C -0.173 4.173 17 C -0.182 4.182 18 C -0.508 4.508 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.246 1.246 26 C -0.097 4.097 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.415 0.585 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.266 0.734 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 0.639 -14.428 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.396 6.396 4 N -0.318 5.318 5 C 0.063 3.937 6 C -0.155 4.155 7 C -0.098 4.098 8 C -0.164 4.164 9 C 0.054 3.946 10 O -0.631 6.631 11 S 2.673 3.327 12 O -0.956 6.956 13 O -0.930 6.930 14 C -0.728 4.728 15 C 0.055 3.945 16 C -0.230 4.230 17 C -0.238 4.238 18 C -0.546 4.546 19 H 0.097 0.903 20 C -0.126 4.126 21 N -0.525 5.525 22 Si 0.705 3.295 23 H -0.208 1.208 24 H -0.229 1.229 25 H -0.172 1.172 26 C -0.119 4.119 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.252 0.748 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.452 2.008 -14.161 23.347 hybrid contribution -0.074 -0.855 0.890 1.236 sum -18.527 1.152 -13.272 22.819 Atomic orbital electron populations 1.21893 0.90300 1.05316 1.05452 1.21117 0.91111 0.83083 0.75069 1.90792 1.70480 1.31210 1.47117 1.43614 1.04721 1.10216 1.73279 1.17391 0.83085 0.96579 0.96654 1.21050 0.94311 0.99809 1.00312 1.20829 0.93595 0.97633 0.97740 1.21483 1.01554 0.94305 0.99025 1.17787 0.90422 0.88176 0.98241 1.85738 1.77847 1.53401 1.46076 1.06182 0.77465 0.76625 0.72473 1.93587 1.43245 1.78768 1.80013 1.93600 1.83886 1.43389 1.72161 1.30653 1.17247 1.15658 1.09229 1.18201 0.95557 0.95156 0.85580 1.22707 1.00786 0.97495 1.02054 1.22821 0.97716 1.01873 1.01437 1.20637 1.15346 1.23287 0.95373 0.90292 1.24954 0.94263 0.94740 0.98594 1.69932 1.18262 1.36367 1.27904 0.87439 0.79687 0.79689 0.82662 1.20796 1.22891 1.17188 1.21186 0.92719 1.00169 0.97845 0.88136 0.88365 0.89806 0.74823 0.84572 0.83721 0.83536 0.85262 0.84883 0.94462 0.91260 0.92157 0.91720 0.92926 0.93158 0.92390 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.31 36.00 0.37 -0.42 16 2 C 0.51 4.92 7.70 -10.99 -0.08 4.84 16 3 O -0.52 -7.70 14.71 5.55 0.08 -7.62 16 4 N -0.67 -5.59 5.34 -9.88 -0.05 -5.64 16 5 C 0.16 1.83 6.29 -83.72 -0.53 1.30 16 6 C -0.13 -1.21 9.96 -39.37 -0.39 -1.60 16 7 C -0.08 -0.77 10.03 -39.63 -0.40 -1.17 16 8 C -0.14 -1.80 8.46 -39.40 -0.33 -2.13 16 9 C 0.10 1.52 4.79 -39.24 -0.19 1.33 16 10 O -0.67 -11.84 10.05 -51.74 -0.52 -12.36 16 11 S 2.57 49.75 4.20 -107.50 -0.45 49.30 16 12 O -0.96 -19.36 13.88 -67.04 -0.93 -20.29 16 13 O -0.93 -20.34 15.94 -67.04 -1.07 -21.41 16 14 C -0.60 -11.32 4.39 37.16 0.16 -11.15 16 15 C 0.06 1.33 0.52 -155.66 -0.08 1.25 16 16 C -0.17 -3.96 6.95 37.16 0.26 -3.71 16 17 C -0.18 -4.06 7.21 37.16 0.27 -3.79 16 18 C -0.51 -13.55 8.62 -34.44 -0.30 -13.85 16 19 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 20 C 0.08 2.17 5.31 -17.82 -0.09 2.07 16 21 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 22 Si 0.87 21.42 22.79 -169.99 -3.87 17.55 16 23 H -0.28 -6.76 7.10 56.52 0.40 -6.36 16 24 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.25 -5.68 4.67 56.52 0.26 -5.41 16 26 C -0.10 -1.50 7.66 -39.25 -0.30 -1.80 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.42 1.66 8.81 -40.82 -0.36 1.30 16 31 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.15 1.58 7.52 -52.49 -0.39 1.19 16 34 H 0.13 2.15 6.62 -51.92 -0.34 1.81 16 35 H 0.13 2.28 8.14 -51.93 -0.42 1.86 16 36 H 0.04 0.80 6.21 -51.93 -0.32 0.48 16 37 H 0.07 1.62 4.34 -51.93 -0.23 1.39 16 38 H 0.06 1.30 8.11 -51.92 -0.42 0.88 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 1.21 2.26 -51.93 -0.12 1.09 16 41 H 0.05 1.06 5.46 -51.93 -0.28 0.77 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.15 2.56 6.34 -52.48 -0.33 2.23 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -37.08 346.75 -7.90 -44.98 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.45 Total: 4.56 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -1.63 Total: -28.84 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.72 Total: -31.10 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -2.44 Total: -61.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -3.87 Total: 17.55 kcal Atomic # 16 Polarization: 49.75 SS G_CDS: -0.45 Total: 49.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.08 -7.90 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295355131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.308 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds