Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99787 * 2 1 4 4 N 1.34780 * 120.00383 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00205 * 184.31276 * 4 2 1 6 6 C 1.38927 * 120.04059 * 212.78382 * 5 4 2 7 7 C 1.38125 * 120.03710 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.12385 * 359.67318 * 7 6 5 9 9 C 1.38763 * 120.08435 * 0.60830 * 8 7 6 10 10 O 1.35896 * 120.02124 * 179.69469 * 9 8 7 11 11 S 1.52197 * 114.00035 * 269.72143 * 10 9 8 12 12 O 1.42100 * 104.27663 * 318.92928 * 11 10 9 13 13 O 1.42097 * 104.28317 * 191.07018 * 11 10 9 14 14 C 1.81400 * 104.44811 * 74.99917 * 11 10 9 15 15 C 1.53004 * 109.47347 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46961 * 300.00257 * 15 14 11 17 17 C 1.52997 * 109.46879 * 59.99789 * 15 14 11 18 18 C 1.50696 * 109.47527 * 179.97438 * 15 14 11 19 19 H 1.08007 * 120.00036 * 1.06280 * 18 15 14 20 20 C 1.37876 * 120.00328 * 181.05826 * 18 15 14 21 21 N 1.31516 * 120.00160 * 194.46855 * 20 18 15 22 22 Si 1.86796 * 119.99798 * 14.47395 * 20 18 15 23 23 H 1.48506 * 109.47195 * 84.31629 * 22 20 18 24 24 H 1.48498 * 109.47113 * 204.31655 * 22 20 18 25 25 H 1.48500 * 109.47216 * 324.31836 * 22 20 18 26 26 C 1.38624 * 119.96010 * 359.41585 * 9 8 7 27 27 H 1.08998 * 109.47555 * 269.99909 * 1 2 3 28 28 H 1.08998 * 109.47449 * 30.00206 * 1 2 3 29 29 H 1.09007 * 109.47218 * 150.00119 * 1 2 3 30 30 H 0.96998 * 119.99660 * 4.31899 * 4 2 1 31 31 H 1.07995 * 119.98224 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.93672 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.95887 * 180.29856 * 8 7 6 34 34 H 1.09004 * 109.47300 * 299.99841 * 14 11 10 35 35 H 1.08993 * 109.47162 * 60.00112 * 14 11 10 36 36 H 1.09002 * 109.47380 * 70.21627 * 16 15 14 37 37 H 1.08998 * 109.47517 * 190.21846 * 16 15 14 38 38 H 1.09007 * 109.46998 * 310.21741 * 16 15 14 39 39 H 1.09004 * 109.47247 * 60.00643 * 17 15 14 40 40 H 1.09001 * 109.47267 * 179.97438 * 17 15 14 41 41 H 1.08992 * 109.47771 * 300.00129 * 17 15 14 42 42 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.06744 * 180.25728 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5771 -1.1688 0.0916 6 6 4.3148 -2.1558 -0.5500 7 6 5.6931 -2.1577 -0.4596 8 6 6.3422 -1.1745 0.2633 9 6 5.6101 -0.1896 0.9111 10 8 6.2493 0.7728 1.6266 11 16 6.4652 0.4154 3.0902 12 8 5.2491 -0.2064 3.4822 13 8 6.8925 1.6313 3.6886 14 6 7.8186 -0.7922 3.0662 15 6 8.1328 -1.2347 4.4968 16 6 8.5489 -0.0187 5.3269 17 6 6.8893 -1.8745 5.1174 18 6 9.2567 -2.2383 4.4769 19 1 9.7140 -2.5186 3.5394 20 6 9.7014 -2.7989 5.6555 21 7 10.8468 -3.4446 5.6855 22 14 8.6771 -2.6412 7.2095 23 1 7.6499 -3.7134 7.2362 24 1 9.5579 -2.7699 8.3981 25 1 8.0090 -1.3152 7.2297 26 6 4.2267 -0.1847 0.8231 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6980 -2.0060 -0.0624 31 1 3.8104 -2.9221 -1.1198 32 1 6.2650 -2.9260 -0.9587 33 1 7.4202 -1.1758 0.3283 34 1 7.5220 -1.6588 2.4752 35 1 8.7043 -0.3366 2.6237 36 1 7.6823 0.6211 5.4939 37 1 8.9448 -0.3518 6.2863 38 1 9.3161 0.5412 4.7919 39 1 6.5929 -2.7408 4.5261 40 1 7.1132 -2.1901 6.1364 41 1 6.0761 -1.1489 5.1318 42 1 11.1594 -3.8393 6.5146 43 1 3.6554 0.5835 1.3231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295355131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -119.071847 kcal Electronic energy + Delta-G solvation = -28755.731442 eV Core-core repulsion = 24700.973860 eV Total energy + Delta-G solvation = -4054.757582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32673 -41.16191 -38.98527 -38.54146 -38.37595 -37.23185 -35.79273 -34.06025 -32.05414 -31.44055 -29.69037 -29.07036 -28.19246 -27.10843 -24.85161 -24.19019 -22.10349 -21.66701 -21.30276 -19.67719 -19.07577 -18.37385 -18.16776 -17.84751 -17.50875 -17.41817 -17.28003 -16.63513 -16.16778 -16.05160 -15.22077 -15.09980 -15.05232 -14.84249 -14.63984 -14.58108 -14.24588 -14.19273 -14.00858 -13.57874 -13.39352 -13.33338 -13.28037 -13.07302 -12.98902 -12.83264 -12.73051 -12.65627 -12.55534 -12.03983 -11.89481 -11.83710 -11.62024 -11.04457 -10.97868 -10.69749 -10.51061 -10.02450 -9.34646 -8.34681 -6.34283 -1.05942 -0.02442 0.14876 1.06572 1.30068 1.36164 1.43311 1.47532 2.00894 2.29788 2.49730 2.52624 2.89858 2.99322 3.54825 3.66920 3.70678 3.85642 3.91217 4.01207 4.07921 4.20163 4.26240 4.42284 4.47165 4.50993 4.54561 4.64094 4.65387 4.69843 4.88357 4.97116 4.98798 5.06990 5.09936 5.15142 5.21396 5.30559 5.31678 5.48399 5.60367 5.80629 6.25696 6.35998 6.68271 7.06637 7.30046 8.80789 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.003497 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.629059 B = 8005.119962 C = 8237.871354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.498 3.502 3 O -0.582 6.582 4 N -0.657 5.657 5 C 0.148 3.852 6 C -0.111 4.111 7 C -0.072 4.072 8 C -0.152 4.152 9 C 0.051 3.949 10 O -0.674 6.674 11 S 2.588 3.412 12 O -0.971 6.971 13 O -0.966 6.966 14 C -0.596 4.596 15 C 0.050 3.950 16 C -0.180 4.180 17 C -0.187 4.187 18 C -0.502 4.502 19 H 0.056 0.944 20 C 0.030 3.970 21 N -0.933 5.933 22 Si 0.914 3.086 23 H -0.272 1.272 24 H -0.306 1.306 25 H -0.226 1.226 26 C -0.129 4.129 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.438 0.562 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.267 0.733 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 -1.328 -16.194 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.461 6.461 4 N -0.305 5.305 5 C 0.053 3.947 6 C -0.132 4.132 7 C -0.090 4.090 8 C -0.173 4.173 9 C 0.010 3.990 10 O -0.633 6.633 11 S 2.689 3.311 12 O -0.969 6.969 13 O -0.964 6.964 14 C -0.726 4.726 15 C 0.047 3.953 16 C -0.238 4.238 17 C -0.243 4.243 18 C -0.541 4.541 19 H 0.075 0.925 20 C -0.169 4.169 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.198 1.198 24 H -0.235 1.235 25 H -0.151 1.151 26 C -0.152 4.152 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.279 0.721 31 H 0.203 0.797 32 H 0.204 0.796 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.749 0.013 -15.923 26.155 hybrid contribution 0.569 -0.302 1.227 1.386 sum -20.180 -0.289 -14.696 24.966 Atomic orbital electron populations 1.21943 0.86149 1.07219 1.06627 1.22126 0.93081 0.82410 0.73446 1.90774 1.72010 1.33433 1.49895 1.43598 1.03632 1.11127 1.72177 1.17665 0.84731 0.96137 0.96160 1.21623 0.94181 0.99102 0.98293 1.21419 0.94261 0.97110 0.96203 1.21826 1.02359 0.94098 0.99003 1.18284 0.90986 0.89518 1.00226 1.85698 1.78153 1.54214 1.45214 1.05633 0.76995 0.75861 0.72630 1.93549 1.43787 1.78867 1.80739 1.93548 1.84293 1.44816 1.73759 1.30586 1.18009 1.16775 1.07265 1.18178 0.94710 0.94274 0.88112 1.22757 1.01427 0.97783 1.01822 1.22845 0.97648 1.02671 1.01166 1.20868 1.15716 1.23196 0.94275 0.92530 1.25609 0.94979 0.94829 1.01499 1.70039 1.20025 1.38362 1.28739 0.86747 0.78639 0.80933 0.79315 1.19829 1.23464 1.15092 1.21185 0.92865 1.01273 0.99862 0.87080 0.88474 0.85915 0.72114 0.79653 0.79615 0.82248 0.82924 0.83418 0.93509 0.91989 0.91648 0.90532 0.93565 0.92043 0.92412 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.31 71.23 0.73 -0.37 16 2 C 0.50 9.22 7.70 87.65 0.67 9.89 16 3 O -0.58 -17.95 14.71 -3.06 -0.04 -17.99 16 4 N -0.66 -9.39 5.34 -303.55 -1.62 -11.01 16 5 C 0.15 3.16 6.29 38.14 0.24 3.40 16 6 C -0.11 -1.52 9.96 22.41 0.22 -1.30 16 7 C -0.07 -1.09 10.03 22.24 0.22 -0.87 16 8 C -0.15 -3.52 8.46 22.39 0.19 -3.33 16 9 C 0.05 1.62 4.79 22.49 0.11 1.73 16 10 O -0.67 -24.24 10.05 -61.47 -0.62 -24.86 16 11 S 2.59 100.26 4.20 -56.49 -0.24 100.02 16 12 O -0.97 -39.36 13.88 -118.57 -1.65 -41.00 16 13 O -0.97 -42.74 15.94 -118.57 -1.89 -44.63 16 14 C -0.60 -21.99 4.39 71.98 0.32 -21.67 16 15 C 0.05 2.23 0.52 -52.93 -0.03 2.20 16 16 C -0.18 -8.15 6.95 71.98 0.50 -7.65 16 17 C -0.19 -8.04 7.21 71.98 0.52 -7.52 16 18 C -0.50 -26.64 8.62 25.60 0.22 -26.42 16 19 H 0.06 3.19 7.99 -2.91 -0.02 3.17 16 20 C 0.03 1.67 5.31 84.65 0.45 2.12 16 21 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 22 Si 0.91 43.53 22.79 68.60 1.56 45.09 16 23 H -0.27 -12.44 7.10 99.48 0.71 -11.74 16 24 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.23 -9.99 4.67 99.48 0.46 -9.52 16 26 C -0.13 -4.04 7.66 22.49 0.17 -3.87 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 30 H 0.44 1.80 8.81 -92.71 -0.82 0.98 16 31 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 3.11 7.52 -2.91 -0.02 3.09 16 34 H 0.15 4.82 6.62 -2.39 -0.02 4.81 16 35 H 0.15 4.95 8.14 -2.39 -0.02 4.93 16 36 H 0.05 2.00 6.21 -2.39 -0.01 1.98 16 37 H 0.06 2.84 4.34 -2.39 -0.01 2.83 16 38 H 0.06 2.81 8.11 -2.38 -0.02 2.79 16 39 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 40 H 0.05 2.04 2.26 -2.39 -0.01 2.03 16 41 H 0.06 2.50 5.46 -2.39 -0.01 2.49 16 42 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.12 4.37 6.34 -2.91 -0.02 4.35 16 Total: -1.00 -85.26 346.75 0.35 -84.91 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.00 Total: 18.68 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 4.54 Total: -53.67 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.32 Total: -66.55 kcal Atomic # 8 Polarization: -124.29 SS G_CDS: -4.20 Total: -128.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.56 Total: 45.09 kcal Atomic # 16 Polarization: 100.26 SS G_CDS: -0.24 Total: 100.02 kcal Total: -85.26 0.35 -84.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295355131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.163 kcal (2) G-P(sol) polarization free energy of solvation -85.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds