Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 O 1.42905 * 109.46871 * 179.97438 * 16 15 13 18 18 C 1.35901 * 116.99937 * 179.97438 * 17 16 15 19 19 C 1.38731 * 120.05759 * 359.73302 * 18 17 16 20 20 C 1.38142 * 119.94313 * 179.73821 * 19 18 17 21 21 C 1.38270 * 120.05389 * 0.50784 * 20 19 18 22 22 S 1.76196 * 119.94064 * 179.74237 * 21 20 19 23 23 C 1.81398 * 104.45091 * 270.02359 * 22 21 20 24 24 O 1.42104 * 104.27890 * 26.09604 * 22 21 20 25 25 O 1.42103 * 104.27652 * 153.95298 * 22 21 20 26 26 C 1.38266 * 120.11348 * 359.76837 * 21 20 19 27 27 C 1.38146 * 120.05175 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 36 36 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 37 37 H 1.08004 * 120.02394 * 359.97438 * 19 18 17 38 38 H 1.07996 * 119.96820 * 180.23154 * 20 19 18 39 39 H 1.08997 * 109.47159 * 60.00515 * 23 22 21 40 40 H 1.08999 * 109.47550 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47379 * 299.99922 * 23 22 21 42 42 H 1.07998 * 119.97331 * 179.97438 * 26 21 20 43 43 H 1.08000 * 120.02146 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 8 3.1769 -0.4189 5.9257 18 6 3.2829 0.3174 7.0631 19 6 2.9409 1.6619 7.0549 20 6 3.0445 2.4068 8.2136 21 6 3.4985 1.8160 9.3784 22 16 3.6358 2.7705 10.8530 23 6 5.3209 3.4403 10.8034 24 8 2.6810 3.8100 10.6878 25 8 3.5083 1.8183 11.9000 26 6 3.8453 0.4776 9.3878 27 6 3.7385 -0.2729 8.2329 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 3.3726 1.0773 4.5141 36 1 1.7011 0.6461 4.9483 37 1 2.5905 2.1248 6.1442 38 1 2.7748 3.4525 8.2086 39 1 5.4424 4.0524 9.9098 40 1 5.4953 4.0512 11.6891 41 1 6.0377 2.6194 10.7819 42 1 4.2000 0.0185 10.2987 43 1 4.0100 -1.3182 8.2407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299699341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -150.803504 kcal Electronic energy + Delta-G solvation = -26053.264235 eV Core-core repulsion = 21997.130665 eV Total energy + Delta-G solvation = -4056.133569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40393 -40.55864 -38.63828 -38.10403 -36.93481 -36.77752 -34.37073 -33.36954 -32.15621 -31.30836 -30.49890 -30.12765 -27.35738 -26.01160 -24.06972 -23.53661 -22.46026 -21.14594 -20.00478 -19.68148 -18.80028 -18.38188 -17.56557 -17.48744 -17.18800 -17.09265 -17.06440 -16.32492 -16.05355 -15.91644 -15.64751 -14.92183 -14.67120 -14.53248 -14.45994 -14.31072 -14.17730 -13.89910 -13.88610 -13.66891 -13.19008 -13.11012 -13.07711 -13.00101 -12.83687 -12.82244 -12.69456 -12.27909 -12.16630 -12.11714 -11.98617 -11.89719 -11.65068 -11.13082 -10.83974 -10.59141 -10.19388 -9.79332 -9.66307 -8.18484 -6.36064 -0.80953 -0.15016 0.20129 1.45152 1.46853 1.54661 1.71279 1.74342 1.97948 2.37328 2.38238 2.79572 3.07266 3.12135 3.21832 3.55088 3.71859 3.79005 3.88740 4.05702 4.12652 4.15143 4.19650 4.31317 4.43824 4.52331 4.68899 4.69365 4.74679 4.83675 4.90982 4.93017 5.00561 5.04077 5.08216 5.16444 5.41833 5.57311 5.58949 5.67157 5.87959 6.08648 6.15109 6.71616 6.90538 7.30982 7.50706 8.87459 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.001636 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.271033 B =17108.836496 C =17421.262812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.264 1.264 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.602 6.602 15 C -0.125 4.125 16 C 0.077 3.923 17 O -0.311 6.311 18 C 0.168 3.832 19 C -0.243 4.243 20 C 0.006 3.994 21 C -0.704 4.704 22 S 2.513 3.487 23 C -0.626 4.626 24 O -0.982 6.982 25 O -0.975 6.975 26 C 0.009 3.991 27 C -0.177 4.177 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.449 -1.330 26.179 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.213 1.213 10 H -0.195 1.195 11 H -0.189 1.189 12 N -0.351 5.351 13 C 0.290 3.710 14 O -0.484 6.484 15 C -0.165 4.165 16 C 0.002 3.998 17 O -0.224 6.224 18 C 0.121 3.879 19 C -0.262 4.262 20 C -0.012 4.012 21 C -0.790 4.790 22 S 2.696 3.304 23 C -0.780 4.780 24 O -0.979 6.979 25 O -0.972 6.972 26 C -0.009 4.009 27 C -0.196 4.196 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.525 -0.514 26.605 28.615 hybrid contribution 0.274 -0.381 -2.068 2.120 sum 10.798 -0.894 24.537 26.823 Atomic orbital electron populations 1.21908 0.98327 0.99515 0.99612 1.18356 0.91115 0.92004 0.81962 0.98236 1.21523 1.32657 1.13641 0.90739 0.90675 1.25820 0.94898 0.95604 1.02407 1.70047 1.36911 1.23930 1.24676 0.85383 0.78654 0.78669 0.77537 1.21350 1.19518 1.18899 1.46244 1.64833 1.14437 1.09576 1.20925 0.77579 0.86941 0.85543 1.90663 1.53377 1.18354 1.86026 1.21398 1.06232 0.99322 0.89503 1.22450 0.99962 0.95056 0.82343 1.85990 1.80257 1.39025 1.17112 1.19591 0.91279 0.90263 0.86732 1.21632 1.09195 0.94243 1.01136 1.20943 0.89592 1.00583 0.90118 1.30556 1.20116 1.08944 1.19390 1.04634 0.78952 0.73795 0.73004 1.30049 1.19236 1.14787 1.13919 1.93536 1.60042 1.58284 1.86076 1.93531 1.87244 1.61989 1.54455 1.21070 0.90483 0.91145 0.98233 1.20851 1.06073 1.02529 0.90156 0.91573 0.94026 0.96828 0.92562 0.75626 0.85537 0.85478 0.91220 0.91562 0.84440 0.82804 0.83227 0.82916 0.82592 0.81138 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.52 2.56 44.24 0.11 13.63 16 3 H 0.00 -0.02 7.58 -2.38 -0.02 -0.03 16 4 C -0.55 -28.12 8.73 25.60 0.22 -27.89 16 5 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.68 5.30 84.66 0.45 1.12 16 7 N -0.92 -51.86 11.32 21.45 0.24 -51.62 16 8 Si 0.97 41.07 29.54 68.60 2.03 43.10 16 9 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 N -0.70 -27.11 5.07 -446.09 -2.26 -29.37 16 13 C 0.50 18.17 7.79 87.66 0.68 18.85 16 14 O -0.60 -27.35 15.65 -3.04 -0.05 -27.40 16 15 C -0.12 -2.93 6.07 29.85 0.18 -2.75 16 16 C 0.08 1.87 4.03 71.98 0.29 2.16 16 17 O -0.31 -6.96 10.14 -92.43 -0.94 -7.90 16 18 C 0.17 3.60 6.69 22.51 0.15 3.75 16 19 C -0.24 -5.18 9.04 22.37 0.20 -4.98 16 20 C 0.01 0.12 9.46 22.25 0.21 0.33 16 21 C -0.70 -11.16 5.66 22.28 0.13 -11.04 16 22 S 2.51 32.38 5.80 -56.49 -0.33 32.05 16 23 C -0.63 -1.45 10.80 113.37 1.22 -0.23 16 24 O -0.98 -20.54 17.12 -127.65 -2.19 -22.73 16 25 O -0.97 -18.51 17.12 -127.65 -2.19 -20.69 16 26 C 0.01 0.14 9.46 22.25 0.21 0.35 16 27 C -0.18 -3.02 9.99 22.37 0.22 -2.80 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.41 12.83 8.54 -92.71 -0.79 12.04 16 33 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 1.77 7.61 -2.39 -0.02 1.75 16 36 H 0.07 1.73 7.63 -2.39 -0.02 1.71 16 37 H 0.14 2.98 6.30 -2.91 -0.02 2.96 16 38 H 0.15 2.39 7.57 -2.91 -0.02 2.36 16 39 H 0.15 -0.01 8.14 -2.39 -0.02 -0.02 16 40 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.17 1.62 7.57 -2.91 -0.02 1.60 16 43 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -79.54 377.86 -0.48 -80.02 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.25 Total: 20.04 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.95 Total: -15.50 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.02 Total: -80.99 kcal Atomic # 8 Polarization: -73.36 SS G_CDS: -5.36 Total: -78.72 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 32.38 SS G_CDS: -0.33 Total: 32.05 kcal Total: -79.54 -0.48 -80.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299699341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.788 kcal (2) G-P(sol) polarization free energy of solvation -79.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds