Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00214 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47014 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46911 * 179.97438 * 16 15 13 18 18 C 1.35903 * 116.99589 * 179.97438 * 17 16 15 19 19 C 1.38731 * 120.05670 * 359.73084 * 18 17 16 20 20 C 1.38143 * 119.94148 * 179.74161 * 19 18 17 21 21 C 1.38269 * 120.05884 * 0.50965 * 20 19 18 22 22 S 1.76195 * 119.94870 * 179.74679 * 21 20 19 23 23 C 1.81399 * 104.44802 * 270.02122 * 22 21 20 24 24 O 1.42106 * 104.27607 * 26.08988 * 22 21 20 25 25 O 1.42097 * 104.27888 * 153.94763 * 22 21 20 26 26 C 1.38266 * 120.10844 * 359.76376 * 21 20 19 27 27 C 1.38155 * 120.05672 * 359.97438 * 26 21 20 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 33 33 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 34 34 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 35 35 H 1.09001 * 109.46901 * 300.00065 * 16 15 13 36 36 H 1.09002 * 109.47469 * 59.99902 * 16 15 13 37 37 H 1.08001 * 120.03047 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.97294 * 180.22989 * 20 19 18 39 39 H 1.09000 * 109.47321 * 59.99895 * 23 22 21 40 40 H 1.09004 * 109.47272 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.46928 * 299.99712 * 23 22 21 42 42 H 1.08003 * 119.97407 * 180.02562 * 26 21 20 43 43 H 1.07998 * 120.02740 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.1456 -2.2878 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 6 2.7018 0.2549 -4.7586 17 8 3.1791 -0.4184 -5.9252 18 6 3.2853 0.3179 -7.0625 19 6 2.9319 1.6595 -7.0572 20 6 3.0458 2.4070 -8.2133 21 6 3.5015 1.8168 -9.3776 22 16 3.6393 2.7714 -10.8521 23 6 2.0253 2.5914 -11.6603 24 8 3.8205 4.1035 -10.3915 25 8 4.6494 2.1122 -11.6033 26 6 3.8490 0.4786 -9.3869 27 6 3.7421 -0.2721 -8.2320 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1617 3.4844 32 1 2.2491 -1.6317 -1.1527 33 1 3.6492 -1.1201 -3.3980 34 1 1.9777 -1.5506 -3.8326 35 1 1.7026 0.6471 -4.9483 36 1 3.3742 1.0770 -4.5133 37 1 2.5716 2.1199 -6.1491 38 1 2.7743 3.4524 -8.2088 39 1 1.2446 2.9711 -11.0012 40 1 2.0205 3.1570 -12.5921 41 1 1.8410 1.5384 -11.8731 42 1 4.2052 0.0199 -10.2975 43 1 4.0132 -1.3175 -8.2399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299699342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -124.208336 kcal Electronic energy + Delta-G solvation = -26052.228618 eV Core-core repulsion = 21997.248302 eV Total energy + Delta-G solvation = -4054.980316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.56084 -39.09625 -37.80612 -37.43206 -36.25888 -34.96426 -32.61573 -32.19371 -31.40306 -30.42081 -29.82002 -28.81185 -25.36418 -24.92152 -23.33124 -22.51188 -20.91193 -19.55022 -19.38165 -18.80436 -17.82781 -16.96722 -16.66312 -16.59543 -16.47363 -15.86367 -15.48229 -15.31591 -15.01377 -14.66595 -14.25219 -14.09521 -13.90769 -13.77453 -13.63113 -13.34602 -13.25456 -12.94960 -12.51766 -12.41367 -12.32998 -12.27644 -11.97759 -11.72843 -11.49695 -11.20296 -11.14690 -11.05323 -11.04437 -10.97204 -10.81032 -10.37745 -10.31058 -9.48125 -9.24561 -9.12046 -8.89511 -8.63190 -8.04675 -6.19224 -4.28914 -0.29592 0.57846 0.91884 2.51480 2.70159 3.07524 3.18742 3.20265 3.27506 3.29955 3.59518 3.74654 4.07580 4.30368 4.32657 4.33308 4.44082 4.53723 4.72974 4.83811 4.87456 5.00860 5.13326 5.17433 5.17759 5.22241 5.47117 5.52015 5.62543 5.67409 5.69976 5.74763 5.90504 6.28990 6.73451 6.86819 6.98959 7.05767 7.33160 7.45221 7.61193 7.82148 8.06760 8.52569 8.68408 8.96992 9.38795 10.86789 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.001636 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.615918 B =17110.723374 C =17443.014015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.558 6.558 15 C -0.142 4.142 16 C 0.072 3.928 17 O -0.311 6.311 18 C 0.192 3.808 19 C -0.229 4.229 20 C 0.018 3.982 21 C -0.705 4.705 22 S 2.506 3.494 23 C -0.651 4.651 24 O -0.940 6.940 25 O -0.942 6.942 26 C 0.012 3.988 27 C -0.175 4.175 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.391 0.609 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -1.645 -26.931 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.438 6.438 15 C -0.182 4.182 16 C -0.003 4.003 17 O -0.223 6.223 18 C 0.145 3.855 19 C -0.248 4.248 20 C -0.001 4.001 21 C -0.793 4.793 22 S 2.686 3.314 23 C -0.801 4.801 24 O -0.937 6.937 25 O -0.939 6.939 26 C -0.007 4.007 27 C -0.195 4.195 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.107 -0.428 -26.990 27.075 hybrid contribution -0.384 -1.295 1.495 2.015 sum 1.723 -1.723 -25.495 25.611 Atomic orbital electron populations 1.22083 0.98354 0.99174 1.00966 1.18795 0.91109 0.94035 0.79917 0.93276 1.21239 1.32540 1.13296 0.90262 0.91956 1.24898 0.94768 0.94956 0.99142 1.69905 1.35821 1.22414 1.23886 0.86372 0.78615 0.79513 0.82466 1.19721 1.20837 1.20843 1.46519 1.64571 1.13696 1.10383 1.20031 0.78933 0.87399 0.84614 1.90677 1.51798 1.16051 1.85280 1.21534 1.04569 0.99530 0.92609 1.22645 1.00512 0.95306 0.81856 1.86035 1.79845 1.39216 1.17181 1.19344 0.89781 0.89977 0.86406 1.21555 1.08517 0.93879 1.00858 1.20747 0.89501 0.99412 0.90430 1.30296 1.21340 1.08673 1.18972 1.04911 0.77073 0.74529 0.74881 1.30244 1.23498 1.12161 1.14207 1.93589 1.84889 1.35021 1.80225 1.93576 1.53151 1.75940 1.71211 1.20712 0.90596 0.91153 0.98247 1.20568 1.06667 1.01550 0.90678 0.95408 0.89057 0.96666 0.92552 0.77660 0.88120 0.88210 0.90522 0.90454 0.83829 0.83796 0.84961 0.85151 0.85000 0.83562 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.46 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.79 8.73 -34.45 -0.30 -14.10 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.70 -13.74 5.07 -54.93 -0.28 -14.02 16 13 C 0.51 9.17 7.79 -10.99 -0.09 9.09 16 14 O -0.56 -12.28 15.64 5.56 0.09 -12.19 16 15 C -0.14 -1.79 6.07 -27.88 -0.17 -1.96 16 16 C 0.07 0.88 4.03 37.16 0.15 1.03 16 17 O -0.31 -3.62 10.14 -19.43 -0.20 -3.82 16 18 C 0.19 2.11 6.69 -39.22 -0.26 1.85 16 19 C -0.23 -2.40 9.04 -39.43 -0.36 -2.75 16 20 C 0.02 0.17 9.46 -39.60 -0.37 -0.21 16 21 C -0.71 -5.96 5.66 -39.56 -0.22 -6.19 16 22 S 2.51 17.75 5.80 -107.50 -0.62 17.13 16 23 C -0.65 -1.92 10.80 101.05 1.09 -0.83 16 24 O -0.94 -9.92 17.12 -57.54 -0.99 -10.91 16 25 O -0.94 -9.45 17.12 -57.54 -0.99 -10.43 16 26 C 0.01 0.10 9.46 -39.60 -0.37 -0.28 16 27 C -0.18 -1.63 9.99 -39.43 -0.39 -2.02 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.07 8.14 -51.94 -0.42 0.64 16 35 H 0.08 0.94 7.61 -51.93 -0.39 0.55 16 36 H 0.08 0.99 7.63 -51.93 -0.40 0.59 16 37 H 0.14 1.45 6.30 -52.49 -0.33 1.12 16 38 H 0.14 1.09 7.57 -52.49 -0.40 0.70 16 39 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 40 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 41 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16 42 H 0.15 0.87 7.57 -52.48 -0.40 0.47 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -35.55 377.86 -8.81 -44.35 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.90 Total: 4.39 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.23 Total: -11.64 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.35 Total: -37.79 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -2.08 Total: -37.35 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 17.75 SS G_CDS: -0.62 Total: 17.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.55 -8.81 -44.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299699342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.855 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds