Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00214 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47014 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46911 * 179.97438 * 16 15 13 18 18 C 1.35903 * 116.99589 * 179.97438 * 17 16 15 19 19 C 1.38731 * 120.05670 * 359.73084 * 18 17 16 20 20 C 1.38143 * 119.94148 * 179.74161 * 19 18 17 21 21 C 1.38269 * 120.05884 * 0.50965 * 20 19 18 22 22 S 1.76195 * 119.94870 * 179.74679 * 21 20 19 23 23 C 1.81399 * 104.44802 * 270.02122 * 22 21 20 24 24 O 1.42106 * 104.27607 * 26.08988 * 22 21 20 25 25 O 1.42097 * 104.27888 * 153.94763 * 22 21 20 26 26 C 1.38266 * 120.10844 * 359.76376 * 21 20 19 27 27 C 1.38155 * 120.05672 * 359.97438 * 26 21 20 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 33 33 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 34 34 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 35 35 H 1.09001 * 109.46901 * 300.00065 * 16 15 13 36 36 H 1.09002 * 109.47469 * 59.99902 * 16 15 13 37 37 H 1.08001 * 120.03047 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.97294 * 180.22989 * 20 19 18 39 39 H 1.09000 * 109.47321 * 59.99895 * 23 22 21 40 40 H 1.09004 * 109.47272 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.46928 * 299.99712 * 23 22 21 42 42 H 1.08003 * 119.97407 * 180.02562 * 26 21 20 43 43 H 1.07998 * 120.02740 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.1456 -2.2878 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 6 2.7018 0.2549 -4.7586 17 8 3.1791 -0.4184 -5.9252 18 6 3.2853 0.3179 -7.0625 19 6 2.9319 1.6595 -7.0572 20 6 3.0458 2.4070 -8.2133 21 6 3.5015 1.8168 -9.3776 22 16 3.6393 2.7714 -10.8521 23 6 2.0253 2.5914 -11.6603 24 8 3.8205 4.1035 -10.3915 25 8 4.6494 2.1122 -11.6033 26 6 3.8490 0.4786 -9.3869 27 6 3.7421 -0.2721 -8.2320 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1617 3.4844 32 1 2.2491 -1.6317 -1.1527 33 1 3.6492 -1.1201 -3.3980 34 1 1.9777 -1.5506 -3.8326 35 1 1.7026 0.6471 -4.9483 36 1 3.3742 1.0770 -4.5133 37 1 2.5716 2.1199 -6.1491 38 1 2.7743 3.4524 -8.2088 39 1 1.2446 2.9711 -11.0012 40 1 2.0205 3.1570 -12.5921 41 1 1.8410 1.5384 -11.8731 42 1 4.2052 0.0199 -10.2975 43 1 4.0132 -1.3175 -8.2399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299699342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -150.956759 kcal Electronic energy + Delta-G solvation = -26053.388517 eV Core-core repulsion = 21997.248302 eV Total energy + Delta-G solvation = -4056.140215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40364 -40.55945 -38.63773 -38.10432 -36.93486 -36.77923 -34.37404 -33.36992 -32.15537 -31.30840 -30.49852 -30.12655 -27.36237 -26.01184 -24.06951 -23.53705 -22.46148 -21.14525 -20.00449 -19.68137 -18.80373 -18.38396 -17.56022 -17.49484 -17.19606 -17.08628 -17.07027 -16.32457 -16.05162 -15.91136 -15.64831 -14.92462 -14.66889 -14.53065 -14.47250 -14.25762 -14.23724 -13.89633 -13.86578 -13.68840 -13.19035 -13.10989 -13.07511 -13.00231 -12.85646 -12.82515 -12.69184 -12.29306 -12.13187 -12.11759 -11.98581 -11.89662 -11.64991 -11.10878 -10.84359 -10.61008 -10.19342 -9.79277 -9.66283 -8.19304 -6.36614 -0.80876 -0.15002 0.20123 1.43595 1.44957 1.56522 1.71291 1.74463 1.98002 2.37341 2.37687 2.79479 3.07393 3.11646 3.21864 3.55123 3.71891 3.79040 3.88770 4.05740 4.12724 4.15236 4.19737 4.31355 4.43867 4.52375 4.69014 4.69342 4.75015 4.83694 4.91251 4.93026 5.00637 5.04107 5.08198 5.16454 5.42076 5.57334 5.59062 5.67209 5.87930 6.08662 6.15128 6.71708 6.90449 7.30718 7.50610 8.87096 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.001636 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.615918 B =17110.723374 C =17443.014015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.602 6.602 15 C -0.125 4.125 16 C 0.077 3.923 17 O -0.311 6.311 18 C 0.168 3.832 19 C -0.243 4.243 20 C 0.006 3.994 21 C -0.704 4.704 22 S 2.513 3.487 23 C -0.626 4.626 24 O -0.982 6.982 25 O -0.975 6.975 26 C 0.009 3.991 27 C -0.177 4.177 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -3.852 -28.764 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.351 5.351 13 C 0.290 3.710 14 O -0.484 6.484 15 C -0.165 4.165 16 C 0.002 3.998 17 O -0.224 6.224 18 C 0.121 3.879 19 C -0.262 4.262 20 C -0.012 4.012 21 C -0.790 4.790 22 S 2.696 3.304 23 C -0.780 4.780 24 O -0.980 6.980 25 O -0.972 6.972 26 C -0.009 4.009 27 C -0.196 4.196 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.184 -2.677 -28.825 29.031 hybrid contribution -0.432 -0.542 1.905 2.027 sum 1.752 -3.219 -26.920 27.169 Atomic orbital electron populations 1.21901 0.98197 0.99566 0.99638 1.18371 0.91217 0.91979 0.81964 0.98292 1.21584 1.32487 1.13557 0.90753 0.90700 1.25806 0.94919 0.95610 1.02396 1.70055 1.37052 1.23938 1.24556 0.85289 0.78061 0.78514 0.78410 1.18287 1.21128 1.20492 1.46245 1.64840 1.14440 1.09564 1.20919 0.77570 0.86937 0.85554 1.90661 1.53399 1.18316 1.86040 1.21396 1.06167 0.99371 0.89522 1.22450 1.00037 0.94955 0.82370 1.85990 1.80258 1.39040 1.17095 1.19592 0.91286 0.90291 0.86696 1.21631 1.09155 0.94213 1.01204 1.20944 0.89832 0.99996 0.90468 1.30557 1.20134 1.08960 1.19353 1.04640 0.78621 0.73029 0.74116 1.30048 1.18845 1.14489 1.14578 1.93536 1.86556 1.36908 1.80957 1.93530 1.56321 1.76111 1.71273 1.21073 0.89900 0.91080 0.98883 1.20853 1.05978 1.02566 0.90214 0.93947 0.91612 0.96727 0.92567 0.75627 0.85738 0.85279 0.91076 0.91707 0.84440 0.82806 0.83208 0.82919 0.82572 0.81137 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.27 13.46 2.56 44.25 0.11 13.57 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -28.09 8.73 25.60 0.22 -27.87 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -51.91 11.32 21.44 0.24 -51.67 16 8 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 9 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.70 -27.09 5.07 -446.09 -2.26 -29.35 16 13 C 0.50 18.16 7.79 87.66 0.68 18.84 16 14 O -0.60 -27.33 15.64 -3.02 -0.05 -27.38 16 15 C -0.12 -2.93 6.07 29.85 0.18 -2.75 16 16 C 0.08 1.87 4.03 71.98 0.29 2.16 16 17 O -0.31 -6.96 10.14 -92.45 -0.94 -7.89 16 18 C 0.17 3.60 6.69 22.51 0.15 3.75 16 19 C -0.24 -5.18 9.04 22.37 0.20 -4.98 16 20 C 0.01 0.12 9.46 22.25 0.21 0.33 16 21 C -0.70 -11.16 5.66 22.28 0.13 -11.03 16 22 S 2.51 32.37 5.80 -56.49 -0.33 32.04 16 23 C -0.63 -1.38 10.80 113.37 1.22 -0.16 16 24 O -0.98 -20.58 17.12 -127.65 -2.19 -22.76 16 25 O -0.98 -18.54 17.12 -127.65 -2.19 -20.72 16 26 C 0.01 0.14 9.46 22.26 0.21 0.35 16 27 C -0.18 -3.02 9.99 22.37 0.22 -2.80 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 30 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.41 12.83 8.54 -92.71 -0.79 12.04 16 33 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 1.78 7.61 -2.39 -0.02 1.76 16 36 H 0.06 1.71 7.63 -2.39 -0.02 1.69 16 37 H 0.14 2.98 6.30 -2.91 -0.02 2.96 16 38 H 0.15 2.38 7.57 -2.91 -0.02 2.36 16 39 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.17 1.62 7.57 -2.91 -0.02 1.60 16 43 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -79.75 377.86 -0.48 -80.23 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.25 Total: 19.61 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.95 Total: -15.39 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.02 Total: -81.02 kcal Atomic # 8 Polarization: -73.40 SS G_CDS: -5.36 Total: -78.76 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 32.37 SS G_CDS: -0.33 Total: 32.04 kcal Total: -79.75 -0.48 -80.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299699342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.728 kcal (2) G-P(sol) polarization free energy of solvation -79.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds