Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35984 * 116.99879 * 2 1 4 4 C 1.38715 * 120.06826 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.90007 * 179.97438 * 4 3 2 6 6 C 1.39126 * 120.29321 * 0.02562 * 5 4 3 7 7 C 1.38349 * 119.78473 * 0.11633 * 6 5 4 8 8 C 1.38506 * 119.88359 * 359.81608 * 7 6 5 9 9 C 1.50786 * 121.40546 * 179.77072 * 7 6 5 10 10 H 1.08998 * 109.42865 * 257.82723 * 9 7 6 11 11 N 1.46500 * 109.43287 * 137.92161 * 9 7 6 12 12 S 1.65601 * 120.00060 * 125.39049 * 11 9 7 13 13 O 1.42095 * 104.27576 * 308.98846 * 12 11 9 14 14 O 1.42095 * 104.27998 * 181.12723 * 12 11 9 15 15 C 1.81403 * 104.44746 * 65.05655 * 12 11 9 16 16 C 1.53001 * 109.47169 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.47335 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00021 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00084 * 179.72179 * 17 16 15 20 20 N 1.31515 * 119.99885 * 180.27736 * 19 17 16 21 21 Si 1.86798 * 120.00026 * 0.27824 * 19 17 16 22 22 H 1.48502 * 109.46881 * 89.99656 * 21 19 17 23 23 H 1.48499 * 109.47071 * 209.99806 * 21 19 17 24 24 H 1.48501 * 109.47037 * 329.99964 * 21 19 17 25 25 C 1.53062 * 109.69646 * 17.85113 * 9 7 6 26 26 C 1.53407 * 108.29845 * 311.77972 * 25 9 7 27 27 O 1.35950 * 118.43530 * 180.40887 * 6 5 4 28 28 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46698 * 299.99072 * 1 2 3 30 30 H 1.08995 * 109.47596 * 59.99940 * 1 2 3 31 31 H 1.08003 * 120.05009 * 359.93090 * 4 3 2 32 32 H 1.08000 * 119.85356 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.86807 * 180.10397 * 8 7 6 34 34 H 0.97000 * 120.00164 * 305.38420 * 11 9 7 35 35 H 1.09004 * 109.47025 * 60.00155 * 15 12 11 36 36 H 1.09002 * 109.47135 * 300.00166 * 15 12 11 37 37 H 1.08996 * 109.47343 * 59.99986 * 16 15 12 38 38 H 1.09002 * 109.47180 * 300.00080 * 16 15 12 39 39 H 0.96996 * 119.99614 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.69795 * 71.47676 * 25 9 7 41 41 H 1.08990 * 109.69894 * 192.07579 * 25 9 7 42 42 H 1.08996 * 109.68828 * 305.00216 * 26 25 9 43 43 H 1.08998 * 109.71201 * 184.45916 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9220 3.6032 0.0000 6 6 3.3112 3.6790 0.0005 7 6 4.0629 2.5176 -0.0019 8 6 3.4297 1.2857 -0.0010 9 6 5.5703 2.5572 -0.0066 10 1 5.9353 2.3501 -1.0125 11 7 6.0873 1.5448 0.9176 12 16 7.1745 0.4152 0.3844 13 8 6.5730 -0.1261 -0.7836 14 8 7.4234 -0.3968 1.5237 15 6 8.6511 1.3764 -0.0471 16 6 9.7415 0.4336 -0.5601 17 6 10.9680 1.2322 -0.9192 18 1 10.9698 2.3049 -0.7936 19 6 12.0900 0.5928 -1.4022 20 7 13.1622 1.2891 -1.7104 21 14 12.0871 -1.2626 -1.6188 22 1 11.6107 -1.6008 -2.9841 23 1 13.4645 -1.7850 -1.4316 24 1 11.1837 -1.8770 -0.6130 25 6 6.0513 3.9419 0.4338 26 6 5.2695 4.9978 -0.3582 27 8 3.8924 4.9080 0.0096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2135 2.3216 -0.0021 32 1 1.3341 4.5091 -0.0008 33 1 4.0167 0.3792 -0.0012 34 1 5.7929 1.5363 1.8418 35 1 9.0122 1.9037 0.8360 36 1 8.4004 2.0984 -0.8242 37 1 9.3802 -0.0933 -1.4432 38 1 9.9923 -0.2887 0.2167 39 1 13.9514 0.8393 -2.0505 40 1 5.8680 4.0725 1.5003 41 1 7.1169 4.0431 0.2286 42 1 5.3772 4.8098 -1.4264 43 1 5.6491 5.9915 -0.1203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341641600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -150.969574 kcal Electronic energy + Delta-G solvation = -27947.983588 eV Core-core repulsion = 23891.842817 eV Total energy + Delta-G solvation = -4056.140771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88606 -40.22300 -38.26787 -37.55578 -37.10156 -36.95689 -35.89845 -33.48119 -32.46997 -31.61829 -30.68788 -28.03972 -27.87156 -25.99910 -24.31974 -23.53442 -23.19779 -21.21293 -20.45357 -19.45347 -19.17862 -18.71627 -18.29261 -17.88388 -17.34481 -17.04107 -16.66409 -16.38429 -16.31841 -16.16732 -15.94691 -15.30993 -15.07019 -14.84598 -14.78005 -14.52319 -14.17315 -13.99233 -13.82064 -13.39890 -13.27431 -13.18218 -13.16915 -13.07089 -13.02415 -12.95643 -12.68995 -12.26284 -12.23058 -12.08879 -11.95736 -11.70862 -11.51771 -11.32896 -11.19466 -10.83704 -10.64567 -9.93430 -8.72796 -8.36021 -6.41062 -0.78935 0.16127 0.41801 1.31755 1.34433 1.43607 1.70590 2.29682 2.31684 2.45438 2.67798 2.72482 2.98312 3.18069 3.44077 3.63894 3.74107 3.82369 3.89458 3.94209 4.08012 4.12172 4.21117 4.36575 4.40011 4.42441 4.54355 4.57273 4.61334 4.70902 4.73162 4.90319 4.95584 4.97546 5.07193 5.08551 5.18434 5.29961 5.35190 5.47628 5.55222 5.99187 6.17435 6.35057 6.54905 6.65249 7.23382 8.79229 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003142 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.338108 B = 8910.600543 C =10110.613893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.079 3.921 4 C -0.160 4.160 5 C -0.113 4.113 6 C 0.100 3.900 7 C -0.139 4.139 8 C -0.124 4.124 9 C 0.190 3.810 10 H 0.105 0.895 11 N -1.098 6.098 12 S 2.612 3.388 13 O -0.988 6.988 14 O -0.992 6.992 15 C -0.584 4.584 16 C -0.018 4.018 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.015 3.985 20 N -0.939 5.939 21 Si 0.920 3.080 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.251 1.251 25 C -0.174 4.174 26 C 0.058 3.942 27 O -0.321 6.321 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.426 0.574 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.269 0.731 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.888 7.162 4.673 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.034 3.966 4 C -0.179 4.179 5 C -0.132 4.132 6 C 0.055 3.945 7 C -0.142 4.142 8 C -0.143 4.143 9 C 0.082 3.918 10 H 0.122 0.878 11 N -0.857 5.857 12 S 2.709 3.291 13 O -0.978 6.978 14 O -0.983 6.983 15 C -0.716 4.716 16 C -0.058 4.058 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.183 4.183 20 N -0.579 5.579 21 Si 0.743 3.257 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.175 1.175 25 C -0.213 4.213 26 C -0.017 4.017 27 O -0.236 6.236 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.132 0.868 34 H 0.262 0.738 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.832 6.166 4.435 27.886 hybrid contribution 0.836 -0.454 0.047 0.952 sum -25.996 5.712 4.482 26.990 Atomic orbital electron populations 1.23348 0.76355 1.05447 1.02493 1.86089 1.23607 1.26882 1.89261 1.19002 0.92008 0.85302 1.00249 1.21324 1.01370 0.90438 1.04760 1.20677 0.91208 0.98932 1.02357 1.18717 0.92402 0.83594 0.99835 1.19790 0.95628 0.92104 1.06632 1.20228 0.92245 0.97828 1.04000 1.19703 0.89346 0.89079 0.93646 0.87757 1.55397 1.60154 1.48441 1.21698 1.04755 0.76187 0.74770 0.73393 1.93540 1.75108 1.77041 1.52079 1.93526 1.86374 1.66856 1.51509 1.30296 1.15210 1.13356 1.12721 1.19385 0.94122 0.95287 0.96969 1.21161 0.96807 0.95007 1.43266 0.92658 1.25820 0.95098 1.02880 0.94550 1.69996 1.04431 1.37941 1.45487 0.86093 0.78519 0.80800 0.80244 1.18606 1.20031 1.17497 1.22789 1.03081 0.92502 1.02922 1.23251 0.77467 1.01675 0.99352 1.85996 1.27685 1.25596 1.84276 0.86914 0.91264 0.91373 0.81871 0.82481 0.86783 0.73764 0.83447 0.83555 0.95108 0.95172 0.92159 0.88722 0.87103 0.90736 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.94 10.50 -93.37 -0.98 -8.92 16 3 C 0.08 1.86 6.68 22.46 0.15 2.01 16 4 C -0.16 -2.77 9.03 22.31 0.20 -2.57 16 5 C -0.11 -1.99 9.93 22.41 0.22 -1.76 16 6 C 0.10 2.09 6.47 22.51 0.15 2.23 16 7 C -0.14 -3.26 5.56 -19.75 -0.11 -3.37 16 8 C -0.12 -3.33 9.20 22.40 0.21 -3.12 16 9 C 0.19 4.09 2.82 44.29 0.12 4.22 16 10 H 0.10 2.29 7.58 -2.39 -0.02 2.27 16 11 N -1.10 -25.96 4.48 -172.32 -0.77 -26.73 16 12 S 2.61 84.45 5.35 -56.49 -0.30 84.15 16 13 O -0.99 -37.61 17.56 -127.65 -2.24 -39.85 16 14 O -0.99 -38.06 18.08 -127.65 -2.31 -40.37 16 15 C -0.58 -19.54 6.01 71.98 0.43 -19.10 16 16 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 17 C -0.52 -28.68 9.66 25.60 0.25 -28.43 16 18 H 0.06 3.19 7.99 -2.91 -0.02 3.17 16 19 C 0.02 0.87 5.47 84.66 0.46 1.33 16 20 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 21 Si 0.92 43.48 27.47 68.60 1.88 45.37 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 25 C -0.17 -2.71 5.80 30.75 0.18 -2.54 16 26 C 0.06 0.81 7.03 72.12 0.51 1.31 16 27 O -0.32 -5.98 10.27 -92.99 -0.96 -6.93 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.61 7.67 -2.38 -0.02 0.59 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.61 16 31 H 0.16 1.71 6.31 -2.91 -0.02 1.69 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.11 3.53 7.69 -2.91 -0.02 3.51 16 34 H 0.43 8.62 8.92 -96.75 -0.86 7.76 16 35 H 0.15 4.35 8.14 -2.39 -0.02 4.33 16 36 H 0.15 4.19 8.14 -2.39 -0.02 4.17 16 37 H 0.03 1.38 7.58 -2.39 -0.02 1.36 16 38 H 0.03 1.38 7.19 -2.39 -0.02 1.36 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.29 367.89 -1.26 -79.54 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.12 Total: 19.44 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 4.00 Total: -49.18 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -0.47 Total: -83.26 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -6.48 Total: -96.07 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: 84.45 SS G_CDS: -0.30 Total: 84.15 kcal Total: -78.29 -1.26 -79.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341641600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.425 kcal (2) G-P(sol) polarization free energy of solvation -78.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds